BGIOSGA004976

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Revision as of 11:14, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA004976| Description = Chromatin assembly factor-1| Definition = Oryza sativa Indica Group BGIOSGA004976, complete gene.| tag = FSM| tid = ...")
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Gene Name

BGIOSGA004976

Description

Chromatin assembly factor-1

Definition

Oryza sativa Indica Group BGIOSGA004976, complete gene.

LocusTag

FSM

Ensembl Transcript ID

BGIOSGA004976-TA

Ensembl Protein ID

BGIOSGA004976-PA

Length

5448

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:42609900..42615347

Sequence Coding Region

42609900..42610520,42610618..42610717,42611023..42611167,42611846..42611969,42612421..42612938
,42613089..42613436,42613535..42613616,42613687..42613818,42614287..42614685
,42614768..42614905,42615041..42615086,42615178..42615347

Genome Context

<gbrowseImage1> name=IndicaChromosome01:42609900..42615347 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:42609900..42615347 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGAAGGCGGCAAGCTTCTTGGCGTTGCTCACCCTGAACCTGCTAATAATATCGATGCTGAGCTGCGCTATGATTTAGGACAGTCGCGAATGCAAGTAGATGGACCTGTTGTTCTCAACCGATCTGCCGAGCTCGAGCCCAGCGATTCGATGGCCATTGATGATGTCCCAGTTGAGGCATCAAGCCAACCTGCGCCGGCGAAGCAGTCTCCTGCGCTGATGGATACCATCGTGGAAGTGCAGAAGCAGCTGAAGAGGAAGAGGGCTTCCAGTGGCCCGGCGCTTGCTGCAGCAGACAAGGATGCTCTAGTTGCTGGATGTTGCCAGGAGCTCGAGGGCTTATTGGAGTATTACAGGGAGGTTTCGGGTCACAGGATGCAATTCGAAGTTGGGAACCTGTCGACGAATGCTGCTATCGGATGCTTGCTAGAGGAGAGCAGTCTTGGATTGTCCAAGTTGGTGGATGAGATATATGAAAAGCTGAAGGGAATGGAAGGCGTGTCGGCGACTTCGGTCCGGAGTTCTGTGCTGCTCATTGGGCAGAGGATGATGTATGGGCAATCTAGTCCGGATGCTGATGTGTTGGAAGATGAATCAGAGACGGCTCTTTGGTGCTGGGAGGTGAGAGATTTGAAGGTGATTCCTCTGAGAATGCGTGGACCTCTGAGTACGCGTAGAACTGCTAGAAAGAAAATCCACGAGAGGATTACTGCTATTTATTCAACGTTATCAGTTCTAGAAGCTCCGGGAGCTGAAGCTCAAGTAAATGATATGAGGAAAGCATCACTGAAGTTAAGCAAAGCACTGAACCTGGAAGGTATTAAATCATTGGTGGAAAGAGCGACACAAAAGAGCAACATTGAACGGCGTGCCAAAAATACTGGATCAACAGCTAAAGAGCCAATGCAAGAGATGGTGAAAAGCAATAACGATACTGGGATTATTGAGAATGTGGATGACTCTCAGCTGCAAAAAAACACCTCAACTAATGAAAAAGATACTCAGAAAGCACAGAAACAAGTTGAAAAGGAGCTAAAACAGAAGGAGAAAGAAGAAGCTCGAATGAGAAAACAACAAAAGAAACAGCAAGAAGAGGCGCTGAGAGAACAGAAACGACGTGAAAAGGAAGAAGCTGAAATGAAGAAACAGCAAAGGAAGCAGGAAGAGGAAGCACAGAAAGAACAGAAGCGCCGTGAAAAGGAAGAAGCTGAAACGAGGAAGCAACAAAAGAAGCAGCAAGAGGAAGCTGAGAAAGAACAGAAGCGCCGTGAGAAGGAAGCTGTCCAACTCAAGAAGCAACTGGCCATTCAGAAGCAAGCTTCTATGATGGAACGGTTTTTCAAAAATAAGAAAAACAGTGAAAAGCTTGAGAAATCTGGAGGAAAGGACTCAGGCGTTCAAACTACTGATCCATGCACCACCAACAAAGAGGTGGTACCATTGGTTACATCCATAATTGATTCTTCATTCTCTCAAAAAGAAAACTGGGCTTTGGAGGATCTTCGCAGATTGCAGATCAGTGGTTGGCAGAAGTTATCTAGCTATAACAGGTCCTCCAGGTGGGGGATCAGAAACAAACCCAAGAAAGAAGCTTTTAAGGAGCTCAAACTTCAAAAAACCTCTGATAACATGCTTGAGGAAATTCTTTCTCCTAATGAAGATACCTGCCACAATTTAAGTCAGGAAAATGAGCCAGATAAGTCAGCAAATGATGTTGATATGCTACCAGCGGTTGAGCTACAGTTTCATGGCACCAATCATGCTAATCCTCTGCCAACTAGATCAATAAAGCGGAAGCTTTTGCAATTTGACAAAAGCAACAGACCTGCATATTATGGGACTTGGAGGAAGAAAAGTGCTGTTGTTGGCCCAAGATGTCCACTTAAGATGGATCCTGATCTTGACTATGAGGTTGATAGTGATGATGAATGGGAAGAGGAGGATCCTGGTGAGAGCCTTTCCGACTGCGAGAAGGACAATGATGAAGTTATGGAGGAGGATTCCAAGATCACAGATGAAGAGAGCGAAGATAGCTTTTTTGTCCCCGATGGTTACCTCTCGGATAATGAGGGGATTCAGATTGAAAGCCTCTTGGACGACAAGGATGAAGCCAGTAGCTCACCACCAGACCAGTGTGCAGAAGTAGAGGAATTTAGGGCTCTACTACGCCAGCAAAAAGTACTAAACACTTTGACTGAGCAGGCTCTCCGCAAGAGCCAACCTCTAGTGATATCAAACTTAACTCATGAAAAAGCTGAATTATTGACTGCCGGAGACCTCAAGGGAACTTCTAAGATTGAGCAGCTCTGCCTACAAGTTCTTTCAATGCGTATCTGTCCTGGAGGTGCTACTATTGATTTACCGGTTATTGATAGTTCATCTGCAAATGCTGAGGAGACCAATCAGTTGAATGTGAAGAGTAGTCCTGCTGCTGCTTCAGCTATACCAGATACAGACCTGGCAGAAATTGTTAAGGTGATAGGATCATGCCGTGATGGTATCAATAAGCTGGTTGAGTCACTGCATCAGAAATTCCCGAATGTGTCAAAGTCACAACTGAAAAATAAAGTGAGGGAGATTTCTGAATTTGTTGATAATCGTTGGCAGGTCAAGAAAGAGGTTCTTAGCAAGCTAGGCTTAAGTTCATCTCCTGCGAGTTCCAAAAAGCCCAAGAGCATAGCGACATACTTCTCCAAGCGGTGTCTACCTCCGGAGGAGGCCATCCTGGCTTCACCTGAGCTGCGCCTGAAGTCGAAAACCACTCAAAACGTCAATGGTGACACTGATATTCCTCGAATCAATCTGCTCCCCTCGTCCCAGTAG</cdnaseq>

Protein Sequence

<aaseq>MEGGKLLGVAHPEPANNIDAELRYDLGQSRMQVDGPVVLNRSAELEPSDSMAIDDVPVEASSQPAPAKQSPALMDTIVEVQKQLKRKRASSGPALAAADKDALVAGCCQELEGLLEYYREVSGHRMQFEVGNLSTNAAIGCLLEESSLGLSKLVDEIYEKLKGMEGVSATSVRSSVLLIGQRMMYGQSSPDADVLEDESETALWCWEVRDLKVIPLRMRGPLSTRRTARKKIHERITAIYSTLSVLEAPGAEAQVNDMRKASLKLSKALNLEGIKSLVERATQKSNIERRAKNTGSTAKEPMQEMVKSNNDTGIIENVDDSQLQKNTSTNEKDTQKAQKQVEKELKQKEKEEARMRKQQKKQQEEALREQKRREKEEAEMKKQQRKQEEEAQKEQKRREKEEAETRKQQKKQQEEAEKEQKRREKEAVQLKKQLAIQKQASMMERFFKNKKNSEKLEKSGGKDSGVQTTDPCTTNKEVVPLVTSIIDSSFSQKENWALEDLRRLQISGWQKLSSYNRSSRWGIRNKPKKEAFKELKLQKTSDNMLEEILSPNEDTCHNLSQENEPDKSANDVDMLPAVELQFHGTNHANPLPTRSIKRKLLQFDKSNRPAYYGTWRKKSAVVGPRCPLKMDPDLDYEVDSDDEWEEEDPGESLSDCEKDNDEVMEEDSKITDEESEDSFFVPDGYLSDNEGIQIESLLDDKDEASSSPPDQCAEVEEFRALLRQQKVLNTLTEQALRKSQPLVISNLTHEKAELLTAGDLKGTSKIEQLCLQVLSMRICPGGATIDLPVIDSSSANAEETNQLNVKSSPAAASAIPDTDLAEIVKVIGSCRDGINKLVESLHQKFPNVSKSQLKNKVREISEFVDNRWQVKKEVLSKLGLSSSPASSKKPKSIATYFSKRCLPPEEAILASPELRLKSKTTQNVNGDTDIPRINLLPSSQ</aaseq>

Gene Sequence

<dnaseqindica>1..621#719..818#1124..1268#1947..2070#2522..3039#3190..3537#3636..3717#3788..3919#4388..4786#4869..5006#5142..5187#5279..5448#ATGGAAGGCGGCAAGCTTCTTGGCGTTGCTCACCCTGAACCTGCTAATAATATCGATGCTGAGCTGCGCTATGATTTAGGACAGTCGCGAATGCAAGTAGATGGACCTGTTGTTCTCAACCGATCTGCCGAGCTCGAGCCCAGCGATTCGATGGCCATTGATGATGTCCCAGTTGAGGCATCAAGCCAACCTGCGCCGGCGAAGCAGTCTCCTGCGCTGATGGATACCATCGTGGAAGTGCAGAAGCAGCTGAAGAGGAAGAGGGCTTCCAGTGGCCCGGCGCTTGCTGCAGCAGACAAGGATGCTCTAGTTGCTGGATGTTGCCAGGAGCTCGAGGGCTTATTGGAGTATTACAGGGAGGTTTCGGGTCACAGGATGCAATTCGAAGTTGGGAACCTGTCGACGAATGCTGCTATCGGATGCTTGCTAGAGGAGAGCAGTCTTGGATTGTCCAAGTTGGTGGATGAGATATATGAAAAGCTGAAGGGAATGGAAGGCGTGTCGGCGACTTCGGTCCGGAGTTCTGTGCTGCTCATTGGGCAGAGGATGATGTATGGGCAATCTAGTCCGGATGCTGATGTGTTGGAAGATGAATCAGAGACGGCTCTTTGGTGCTGGGAGGTAAATTTTGTGTTGCTTGATCAGTTGATGGCTTGATGCACGCAATTATGTGTTTATATGTGTTGTGGTGGCTTAGTTGGTTTTTGTCCATTGACAGGTGAGAGATTTGAAGGTGATTCCTCTGAGAATGCGTGGACCTCTGAGTACGCGTAGAACTGCTAGAAAGAAAATCCACGAGAGGATTACTGCTATTTATTGTAAGCCAGACCTTCTTAAGTCCACTTCCATTTCTCAATACGTGGTGGTAGTTTTATAAGAAATTAGCACGTTCTAGCGTAATTGCGTGGGGGCAATTATTGTTCCAAGTTAGAACTGCATTTACTAAATAATTAGTATTGTGTTTATTTCTGGAAAGGCAATCACATTTCTTATATAGTTGTAGGAGTGCTCCAGTTTATTTTATTTTGATCTAATTTCCATATCGGCTTTACCATGAAAATCTACTTATCCAGTACTCCATATCTTTCCTTTTCTGCTCACTAAATAACTGCACCGATTGCAGCAACGTTATCAGTTCTAGAAGCTCCGGGAGCTGAAGCTCAAGTAAATGATATGAGGAAAGCATCACTGAAGTTAAGCAAAGCACTGAACCTGGAAGGTATTAAATCATTGGTGGAAAGAGCGACACAAAAGAGCAACATTGAACGGTTTGTACCTTCTCGTTAGAGTAAAGTGTACGGGCGGTCCTTAAACTTGTAGGAGTGTGTCATCTAGGTCCCTAAACTCTCAAAATATATATCCAAGTCCTAGAACTTGTCATAGTATGTCATCTAGGTCCCAAATCGTCACAACCACTTCAGGATCATACATGGCGTTGATGTGGCATGCCACACAGACATGACGTGGCATTGTTTTGACTGACAAATAGGACCCATTTAAATTTTTTGCTTTTTCTTTTTTCTTCTCTTTTTCCCCTTTATTCTCCTTTCTTTGTGACCTGAGCAGAAGAAAGGAAAAAAAGAAGAATAAGAAGAAAACGGAAAAGAAAAAGAAAAAGAAAGAAGAAAAAAAAGAAAAGGACATGTCATGTCCATGTGGCATGCCATATCAGCGCCACGTAGGATCCTAGAGGTGATGTGTTGATTTGGGACCTAGATGATACACTTTGACAAGTTCTGGGACCTGGATATGCATTTTGAGAGTTTAGGGACCTATATGACACAACCCTACAAGATTAAGGACCGCTAATACACTTTACTCTTCTCGTTATTACTTTCTGTCCAAGGATTTTCTTGCACATTTTTTATGAGACAGGTGCACACATGATTTTAATCTTCAATCTTTTAGCACTCTGATTTATATATTATATTTTCTTGACAAAACAGGCGTGCCAAAAATACTGGATCAACAGCTAAAGAGCCAATGCAAGAGATGGTGAAAAGCAATAACGATACTGGGATTATTGAGAATGTGGATGACTCTCAGCTGCAAAAAAACACCTCAACTAATGTCAGTATTTCTTCCTGTTTTGTTCTTGAAATGGTCACATGCAAATCTGTTAATGTCAAATTTATTAGAGGATCACATGTATTTGACCAACAATAATTTGGTATATGTTCTGTTGCATATTAGAGCTAAAGTTCTGGACATGACTTCACTTCTTTGAACTATCAACGGCTGACTGTAACAAAAAGCACACAGCTGAACTTACATTATACTACAGTTTATTCTTAAGCAAAGCCACTTGAAATAAGTACTCCCATTTACAATAGGCATGTTGAGCTTGGTGTTGTGGTCTTGAAGTCTTGCTATTTGAGCTACATGTAATTATTCCAAGGATATACTGTTCACTAGCATGGTTTATTAATTTGTTTTGGGGCACAGTGCAATGTGATGCAACAGTAGTTTCGCAAGGAAATTACATATGTTTATCCACTAATGCTATACTGCTGAATTTTAGGAAAAAGATACTCAGAAAGCACAGAAACAAGTTGAAAAGGAGCTAAAACAGAAGGAGAAAGAAGAAGCTCGAATGAGAAAACAACAAAAGAAACAGCAAGAAGAGGCGCTGAGAGAACAGAAACGACGTGAAAAGGAAGAAGCTGAAATGAAGAAACAGCAAAGGAAGCAGGAAGAGGAAGCACAGAAAGAACAGAAGCGCCGTGAAAAGGAAGAAGCTGAAACGAGGAAGCAACAAAAGAAGCAGCAAGAGGAAGCTGAGAAAGAACAGAAGCGCCGTGAGAAGGAAGCTGTCCAACTCAAGAAGCAACTGGCCATTCAGAAGCAAGCTTCTATGATGGAACGGTTTTTCAAAAATAAGAAAAACAGTGAAAAGCTTGAGAAATCTGGAGGAAAGGACTCAGGCGTTCAAACTACTGATCCATGCACCACCAACAAAGAGGTGGTACCATTGGTTACATCCATAATTGATTCTTCATTCTCTCAAAAAGAAAACTGGGCTTTGGAGGATCTTCGCAGGTTAATTTCCTTCTGATGTCAATATGTTTCATATATATGCGCCTAATTGTTACCTCATACTTGAGGCTTTACCAGAAAAAAAAATCATTTACATTCATATATTGTTTTAAGATATGCCAATGCATCACATTTAATAGAAATATGTAACAGATTGCAGATCAGTGGTTGGCAGAAGTTATCTAGCTATAACAGGTCCTCCAGGTGGGGGATCAGAAACAAACCCAAGAAAGAAGCTTTTAAGGAGCTCAAACTTCAAAAAACCTCTGATAACATGCTTGAGGAAATTCTTTCTCCTAATGAAGATACCTGCCACAATTTAAGTCAGGAAAATGAGCCAGATAAGTCAGCAAATGATGTTGATATGCTACCAGCGGTTGAGCTACAGTTTCATGGCACCAATCATGCTAATCCTCTGCCAACTAGATCAATAAAGCGGAAGCTTTTGCAATTTGACAAAAGCAACAGACCTGCATATTATGGGACTTGGAGGAAGAAAAGGTTAGTATTTAATTTGAATACCATGTTCTTAATACTTTCCAACCTCCTGTTTTGAATGCCATGTTTCTTAATGCTTTCCATTCTGTAATCCTTTCCAGTGCTGTTGTTGGCCCAAGATGTCCACTTAAGATGGATCCTGATCTTGACTATGAGGTTGATAGTGATGATGAATGGGAAGAGGTAATTGGTGATTTTGCTCCTTTATTCTCTTTCTTTCTGGCAAGAGGTACTCATGTTGTTTGGCGCACAGGAGGATCCTGGTGAGAGCCTTTCCGACTGCGAGAAGGACAATGATGAAGTTATGGAGGAGGATTCCAAGATCACAGATGAAGAGAGCGAAGATAGCTTTTTTGTCCCCGATGGTTACCTCTCGGATAATGAGGTAAGTCATTAATAAGTGAATTCTTTACCAGTTTACGATATAAATAGAACTTTTAAGTTTGTCTTTTTGTGTAAATGTACATCTCTAAGATGCTTCCATTTAGTTATTGTAACTAACAATCCGTTCTGTTGTGAGAGTGGTGTGCTATTTGTTTCTCTGTACCTGCTGAAAGGATGATAGAAATGATACTTGTGCATACTTAAATCTTCGTTGAATTTATAAGAAAATAAAATTGTGGAACAAGACAAATCCTTGTATGAATATGTATGCTGATATGAGCTACGTCTTCTACTTTTTCCGTATATGAATATGTATGAGTTCTAGGTTGTGATACACTTTCAGTTCTGCTCTACATACATGCGAGATCAATAGTTGTTTCATTGACTAAGGCCCTATTTGGAAAGGATGGGATAAAATCCTAAGGACTAGGTTCAAATCAATTCAACATTTGGAGTTCCTTTATTGCAGGGGATTCAGATTGAAAGCCTCTTGGACGACAAGGATGAAGCCAGTAGCTCACCACCAGACCAGTGTGCAGAAGTAGAGGAATTTAGGGCTCTACTACGCCAGCAAAAAGTACTAAACACTTTGACTGAGCAGGCTCTCCGCAAGAGCCAACCTCTAGTGATATCAAACTTAACTCATGAAAAAGCTGAATTATTGACTGCCGGAGACCTCAAGGGAACTTCTAAGATTGAGCAGCTCTGCCTACAAGTTCTTTCAATGCGTATCTGTCCTGGAGGTGCTACTATTGATTTACCGGTTATTGATAGTTCATCTGCAAATGCTGAGGAGACCAATCAGTTGAATGTGAAGAGTAGTCCTGCTGCTGCTTCAGCTATACCAGATACAGACCTGGCAGAAATTGTAAGTAATCACTTAGTATTCAATGGTAATGTGTTGATTGGATATGCCATTTTCTTATACATATTGTTCAATTCCAATGCAGGTTAAGGTGATAGGATCATGCCGTGATGGTATCAATAAGCTGGTTGAGTCACTGCATCAGAAATTCCCGAATGTGTCAAAGTCACAACTGAAAAATAAAGTGAGGGAGATTTCTGAATTTGTTGATAATCGTTGGCAGGTAAGATATTTTCACATTCAAGAACGCCATACCAACAATGTTTGCTTTTGTGCTAGTGTTATTTACAGCAGCGCATTATGAGAGATGAAATATACTTGGAATGCTCTATTAAGTTATTTTTTCTTATCTCTGCAGGTCAAGAAAGAGGTTCTTAGCAAGCTAGGCTTAAGTTCATCTCCTGGTACTGTACCTCATATTCATTTGTCAGTAGGAATCTTGCCCCCATTGTCATCTTCTGAAACCCTTCTAACAATAAGTCTTGTTTTTTTCAGCGAGTTCCAAAAAGCCCAAGAGCATAGCGACATACTTCTCCAAGCGGTGTCTACCTCCGGAGGAGGCCATCCTGGCTTCACCTGAGCTGCGCCTGAAGTCGAAAACCACTCAAAACGTCAATGGTGACACTGATATTCCTCGAATCAATCTGCTCCCCTCGTCCCAGTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA004976

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA004976&oldid=42700"