BGIOSGA007604

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Revision as of 03:01, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA007604| Description = Japonica Group Os02g0164900 (Os02g0164900) mRNA,| Definition = Oryza sativa Indica Group BGIOSGA007604, complete gene....")
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Gene Name

BGIOSGA007604

Description

Japonica Group Os02g0164900 (Os02g0164900) mRNA,

Definition

Oryza sativa Indica Group BGIOSGA007604, complete gene.

LocusTag

NM_001052528.1

Ensembl Transcript ID

BGIOSGA007604-TA

Ensembl Protein ID

BGIOSGA007604-PA

Length

4936

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:4162147..4167082

Sequence Coding Region

4162147..4162204,4162850..4162968,4163169..4163267,4163364..4163420,4163523..4163678
,4163796..4163880,4164058..4164148,4164262..4164426,4164492..4164614
,4164813..4164888,4165055..4165202,4165338..4166503,4166610..4166800
,4166890..4167082

Genome Context

<gbrowseImage1> name=IndicaChromosome02:4162147..4167082 source=RiceIndica02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome02:4162147..4167082 source=RiceIndica02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGAAGCTCTCGCCGTCGGCCGGCGGCGTCTCCGACCAGCCGCCGTCGCCGCCGGAAGTTGCAGAGGAGCAGAAGTGCCTAAATTCTGAGTTGTGGCATGCATGCGCCGGCCCTCTCGTTTCGCTGCCTGCGGTCGGTAGTCGGGTGGTTTATTTTCCTCAAGGCCACAGTGAGCAGGTAGCTGCATCAACAAATAAGGAAATGGAGTCTCAGATCCCCAACTATCCTAACCTGCCGCCGCAGCTTATATGCCAGCTACATAATGTGACCATGCACGCCGATGCAGAGACGGATGAAGTCTATGCGCAAATGACGCTGCAGCCACTCAGCCCGCAAGAGCTCAAGGATCCATTCCTACCCGCCGAGCTAGGCACTGCCAGCAAGCAGCCAACAAATTATTTCTGCAAAACGTTAACTGCTAGTGACACAAGTACACATGGTGGATTCTCTGTTCCCCGTCGAGCAGCAGAGAAAGTATTTCCTCCGCTGGATTTCACTCAGCAGCCTCCAGCTCAAGAGTTGATGGCGAAAGACCTCCATGGAAATGAATGGAAATTCCGTCATATCTTTCGTGGCCAACCGAAGCGGCATCTTCTGACTACGGGTTGGAGCGTCTTTGTAAGTGCAAAGAGACTGGTTGCTGGAGACTCTGTCCTTTTTATCTGGAATGACAGTAATCAGCTGCTTCTGGGAATTCGTCGGGCAAATAGGCCACAAACGGTCATGCCATCATCAGTATTGTCTAGTGACAGCATGCATATTGGTCTGCTTGCTGCAGCTGCTCACGCCGCATCAACAAATAGCCGGTTTACTATTTTCTATAATCCAAGAGCAAGCCCTTCGGAGTTTGTTATACCACTGGCTAAATATGTAAAGGCTGTCTACCATACCCGCATATCGGTGGGCATGCGTTTCCGGATGCTTTTTGAAACAGAAGAATCCAGTGTTAGGAGATACATGGGGACAATAACAGGAATAAGTGATCTTGATCCTGTTCGTTGGATGAACTCACACTGGCGCTCTGTCAAGGTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTTTGGGAGATCGAGCCTCTGACAACTTTCCCGATGTATCCATCTCCTTTTCCTCTCAGACTAAAGCGTCCATGGCCAACAGGCTTACCTTCTTTATATGGCGGAAAGGAGGATGACTTGGCTTCTTCTCTTATGTGGCTTCGAGATAGTCAAAACACAGGTTTCCAATCTCTGAATTTTGGAGGACTTGGTATGAGTCCGTGGATGCAGCCAAGGCTGGATAGTTCCCTACTTGGTCTGCAACCTGACATGTACCAAACGATAGCGGCGGCGGCGGCTTTACAGAACACCACTAAGCAAGTATCACCTGCCATGCTGCAGTTCCAGCAGCCGCAAAACATTGTCGGTAGATCTTCTCTTCTATCCAGTCAGATTCTGCAGCAAGCACAGCCTCAATTTCAGCAGATGTACCACCAAAACATCAATGGCAACTCAATCCAAGGCCATAGTCAGCCTGAGTACCTCCAGCAACCGCTTCAACATTGCCAATCATTTAACGAACAGAAGCCTCAGTTGCAGCCGCAGCAACAGCAGCAAGAATCACACCAGCAGCAACCTCAGCATCAACAAATGCAACAACAGAAACACTTGTCCAACTTTCAGACTGTACCAAATGCATTGTCGGTTTTTTCACAGCTTTCCTCCACCCCTCAGTCTACACCCTCCACATTGCAGACAGTTTCACCATTCTCACAGCAACATAATTTCCCTGACACAAATATCAGTTGTCTCTCTCCATCCAATGTCTCATCCATGCACGATACACTGAGATCATTCCCTTCAGAAGCTGCTTCAGACCTCCCAGGTGTGCCAAGAATCACCCCTGTACCTGTCTCTGACCCATGGTCATCTAAGCGAGTTGCAGTGGAATCTACGATCACTTCTCGCCCACATGACATTTCATCACAGATAGAGAACTTCGACTTGACACCTTCTAGTATTCCTCAAAACTCCACGTTAGCACCACTGCCTGGAAGGGAATGCCTGGTGGATCAAGATGGGAGCTCTGATCCTCAAAATCACTTCTTGTTTGGTGTAAATATAGACTCACAGTCACTTTTGATGCAAGATGGCATTCCAAGCCTTCACAATGAAAACAGTTCAAGCACAATTCCATATTCCACATCCAACTTCCTTAGCCCTTCTCAAGATGATTATCCATTGAGTCAAACACTAACTACTCCGGGCTGCTTAGATGAATCAGGATATGTTCCATGTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAGGTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGCAGTTATCATGAACTTCGTAGTGAGGTAGGGCGCCTTTTTGGCCTTGAGGGCCAGTTGGAAGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGGACGACGTTCTTCTAGTTGGCGATGATCCGTGGCAGGAATTTGTGAACAGTGTGTCTTGCATAAAGATACTTTCGCCGCAGGAGGTTCAGCAGATGGGCAAGCCGGGCATTGAACTCTTCTCGACTTCTGCAAGGAGACTTGGCAACAGCTGTGACAACTACATGAGCAGGCAGGAATCAAGAAGCCTAAGCACTGGAATCGCGTCGGTGGGCTCAGTTGAGTTCTGA</cdnaseq>

Protein Sequence

<aaseq>MKLSPSAGGVSDQPPSPPEVAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFLPAELGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDSNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWMNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSLYGGKEDDLASSLMWLRDSQNTGFQSLNFGGLGMSPWMQPRLDSSLLGLQPDMYQTIAAAAALQNTTKQVSPAMLQFQQPQNIVGRSSLLSSQILQQAQPQFQQMYHQNINGNSIQGHSQPEYLQQPLQHCQSFNEQKPQLQPQQQQQESHQQQPQHQQMQQQKHLSNFQTVPNALSVFSQLSSTPQSTPSTLQTVSPFSQQHNFPDTNISCLSPSNVSSMHDTLRSFPSEAASDLPGVPRITPVPVSDPWSSKRVAVESTITSRPHDISSQIENFDLTPSSIPQNSTLAPLPGRECLVDQDGSSDPQNHFLFGVNIDSQSLLMQDGIPSLHNENSSSTIPYSTSNFLSPSQDDYPLSQTLTTPGCLDESGYVPCSDNADQVKRPHATFVKVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQEFVNSVSCIKILSPQEVQQMGKPGIELFSTSARRLGNSCDNYMSRQESRSLSTGIASVGSVEF</aaseq>

Gene Sequence

<dnaseqindica>1..58#704..822#1023..1121#1218..1274#1377..1532#1650..1734#1912..2002#2116..2280#2346..2468#2667..2742#2909..3056#3192..4357#4464..4654#4744..4936#ATGAAGCTCTCGCCGTCGGCCGGCGGCGTCTCCGACCAGCCGCCGTCGCCGCCGGAAGGTATAGAGAATAGTACTAGCTACTCTAGCATCTTCTTTCTATTGGGCATTGAGTTGACCAGTTGCATCTCTTTTGTTATTATTATTTTTTCTTTTCTTTTTGCTCATTAATGCTCTTCTCATCCATTGGGTAGTTTATGTTCTTAGGACAAGTTAGTTAGGTTGTTGGCTTGGAAGTCTTTAAATTTCGTTTGGTAATTATGTGCTCCAAATCAATTCAATGATGCAGCCTGTCGATTTCTTCATCTTTTGGGTGATTTGTGCTTTGAATAACCGAGTTACTCCTGTTACAGTAATGATACATACACATGATGCATTTTTTTTTCATTAGACTGCTTAGTTATACTTGTCTACAAGCAAATTAGTGTGATTTTTATTTATGCAGTAACTTTTTTCCCTGTAAAAGTCATCTGCTTCTGGAAACATGCAAACAATTCGTATTCTTAATTCTTGAGAACTCTATCCCCTTCCCCTTCATTTTTTTTTGAAAAATCTTTGATTTTAAACATCTTTGTTAGCCTTAAAATTATCTTCTTGAAATACGTTTTGAACTAGGATTTGATTATGGGATGGTTCAAGAATTACTGCTGACAACTAAAATTTATGTTGCTGTGTGTTCTTCTGAAATGATTTTCCCCTCTTTCAGTTGCAGAGGAGCAGAAGTGCCTAAATTCTGAGTTGTGGCATGCATGCGCCGGCCCTCTCGTTTCGCTGCCTGCGGTCGGTAGTCGGGTGGTTTATTTTCCTCAAGGCCACAGTGAGCAGGTAGTCTTCTTCATCTTAGTACAGATTTTATCCTCATAAGTACTAGATTAACCTGCTGCAGTACTTGAAGTATCAGCAAAATTAGTACCGTAAATTTTACGTTTTTTCTTATATTGCAACATCTCATTGTCAGATCTTAAATTGCAAAGGCCAAAGATTTGTTTGAGATGTTAATGAGCTTATGTACATTTCGTACGTAGGTAGCTGCATCAACAAATAAGGAAATGGAGTCTCAGATCCCCAACTATCCTAACCTGCCGCCGCAGCTTATATGCCAGCTACATAATGTGACCATGCACGTAAGTCTGGAGCAACACAAGACATCTTATTGAAAACTATGTAATACTGTTGTTACTTTTGTGTCTCATCAACTTTTTCTGTGTTTCTTCCTTTAGGCCGATGCAGAGACGGATGAAGTCTATGCGCAAATGACGCTGCAGCCACTCAGCCCGGTAAAACAGAATTTTCTACCTTCTACCCTATATTTGTGTACTCTTGTTTGTATCTAAGAAGCTTACACTTTCTCCTTATTTTTTGTTTTGTTTTGTTTGCAGCAAGAGCTCAAGGATCCATTCCTACCCGCCGAGCTAGGCACTGCCAGCAAGCAGCCAACAAATTATTTCTGCAAAACGTTAACTGCTAGTGACACAAGTACACATGGTGGATTCTCTGTTCCCCGTCGAGCAGCAGAGAAAGTATTTCCTCCGCTGGTATGTGTTCTTGGTTGGCTATTGTATGTGGCATCCTTTGAACAGATTATCTGTACTTATTCAGAGAAGACACCAAGTTATTAGTGTTTCTTAAGGGTTCCTTTGATGATTCTGTAGGATTTCACTCAGCAGCCTCCAGCTCAAGAGTTGATGGCGAAAGACCTCCATGGAAATGAATGGAAATTCCGTCATATCTTTCGTGGTTAGCTATTTTCCGTTTACATCCATTCCTTCTTAATATTGTTATTTTCCTCATAATGCTTGCTGCCTTGTTTTCACGTACAACTTATGTGAGAGTCAAATATCTATCAGTGACATTCTATTTTCAAATAAGAATCTTGAACAAGTATGATAAACATGTAAAATTAAACTTGTGCAGGCCAACCGAAGCGGCATCTTCTGACTACGGGTTGGAGCGTCTTTGTAAGTGCAAAGAGACTGGTTGCTGGAGACTCTGTCCTTTTTATCTGGTATGTTCATTCTTTGAAATTCTCAAAAGTCACTAAATTTCTCCACCTTAACCTTGTCATTCCCAGCAGAGATTTTTTATCCTGTCGTATGATGTATGTCTCTGGTTGATCAGGAATGACAGTAATCAGCTGCTTCTGGGAATTCGTCGGGCAAATAGGCCACAAACGGTCATGCCATCATCAGTATTGTCTAGTGACAGCATGCATATTGGTCTGCTTGCTGCAGCTGCTCACGCCGCATCAACAAATAGCCGGTTTACTATTTTCTATAATCCAAGGTAAACCATATTTTGCACATATCTGATCATTTCGTACAAGTACTCAATTCGCATTCATTTTGCAGAGCAAGCCCTTCGGAGTTTGTTATACCACTGGCTAAATATGTAAAGGCTGTCTACCATACCCGCATATCGGTGGGCATGCGTTTCCGGATGCTTTTTGAAACAGAAGAATCCAGTGTTAGGAGGTATGCCAAATATTTGTTTGTTATATATCATTTAATTCATTCTGTGAGCATCACGTAATGCTATTTCCTTTTCTCTACGTGTTTATGCATTGTCTGTTTATACCTTTATGGTTTTATCTTCTGTTGTGATGTGTAGAGCTTTTGCAGTCTCTACCTAATATTAAGTGGCCTAAATTGCACAATTGCTCTTATTTGCAGATACATGGGGACAATAACAGGAATAAGTGATCTTGATCCTGTTCGTTGGATGAACTCACACTGGCGCTCTGTCAAGGTAGATCTTGAAACATCTGTTTGTTTATAGACCACTCATATGCTTTTATTACCTCATTTTTAGTCTTATCATATTTTCAGATAGTGTGCTTTAGTCATTTTCTACCTTCACTATGAGCTTGCTTCAAAATTAAGCATGTGAACAAGGTTTTCTTTGAATCATGCAGGTTGGATGGGATGAGTCGACTGCTGGAGAGAGACAGCCAAGGGTGTCTCTTTGGGAGATCGAGCCTCTGACAACTTTCCCGATGTATCCATCTCCTTTTCCTCTCAGACTAAAGCGTCCATGGCCAACAGGCTTACCTTCTTTATATGGTACGAGTGACATTAGCATCTTAGTCAGCCCTTTAAACTATAGCAGTGCACAATGATCAATGATGTCTCGTATGTATTATTAGTGCATTGCTCTGATGTTATGATAATCATATTCACCTCTGATGGTTTTGGCAGGCGGAAAGGAGGATGACTTGGCTTCTTCTCTTATGTGGCTTCGAGATAGTCAAAACACAGGTTTCCAATCTCTGAATTTTGGAGGACTTGGTATGAGTCCGTGGATGCAGCCAAGGCTGGATAGTTCCCTACTTGGTCTGCAACCTGACATGTACCAAACGATAGCGGCGGCGGCGGCTTTACAGAACACCACTAAGCAAGTATCACCTGCCATGCTGCAGTTCCAGCAGCCGCAAAACATTGTCGGTAGATCTTCTCTTCTATCCAGTCAGATTCTGCAGCAAGCACAGCCTCAATTTCAGCAGATGTACCACCAAAACATCAATGGCAACTCAATCCAAGGCCATAGTCAGCCTGAGTACCTCCAGCAACCGCTTCAACATTGCCAATCATTTAACGAACAGAAGCCTCAGTTGCAGCCGCAGCAACAGCAGCAAGAATCACACCAGCAGCAACCTCAGCATCAACAAATGCAACAACAGAAACACTTGTCCAACTTTCAGACTGTACCAAATGCATTGTCGGTTTTTTCACAGCTTTCCTCCACCCCTCAGTCTACACCCTCCACATTGCAGACAGTTTCACCATTCTCACAGCAACATAATTTCCCTGACACAAATATCAGTTGTCTCTCTCCATCCAATGTCTCATCCATGCACGATACACTGAGATCATTCCCTTCAGAAGCTGCTTCAGACCTCCCAGGTGTGCCAAGAATCACCCCTGTACCTGTCTCTGACCCATGGTCATCTAAGCGAGTTGCAGTGGAATCTACGATCACTTCTCGCCCACATGACATTTCATCACAGATAGAGAACTTCGACTTGACACCTTCTAGTATTCCTCAAAACTCCACGTTAGCACCACTGCCTGGAAGGGAATGCCTGGTGGATCAAGATGGGAGCTCTGATCCTCAAAATCACTTCTTGTTTGGTGTAAATATAGACTCACAGTCACTTTTGATGCAAGATGGCATTCCAAGCCTTCACAATGAAAACAGTTCAAGCACAATTCCATATTCCACATCCAACTTCCTTAGCCCTTCTCAAGATGATTATCCATTGAGTCAAACACTAACTACTCCGGGCTGCTTAGATGAATCAGGATATGTTCCATGTTCAGATAATGCTGATCAAGTGAAGCGACCGCATGCAACCTTTGTGAAGGTGAGTGAATGGCTTGCATGCTTGATGCACCATCAGTTGCAAAGTTGCATGTTTTTTTTTCCTTTTTCCTCAATTCACTTTGAATTGACAAACTTGTGTCCTATAGGTTTACAAATCTGGAACCGTTGGAAGGTTGCTCGACATCACTAGATTTAGCAGTTATCATGAACTTCGTAGTGAGGTAGGGCGCCTTTTTGGCCTTGAGGGCCAGTTGGAAGACCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGGACGACGTTCTTCTAGTTGGCGATGATCCGTGGCAGTAAGTTTTAACAATCATCACGAGTTCCTTAGCATCTTTCTTTACTGTTTATGCCATCTTCTTACATCCGTGAGGTTCGGAATCTGCAGGGAATTTGTGAACAGTGTGTCTTGCATAAAGATACTTTCGCCGCAGGAGGTTCAGCAGATGGGCAAGCCGGGCATTGAACTCTTCTCGACTTCTGCAAGGAGACTTGGCAACAGCTGTGACAACTACATGAGCAGGCAGGAATCAAGAAGCCTAAGCACTGGAATCGCGTCGGTGGGCTCAGTTGAGTTCTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA007604