BGIOSGA009172

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Revision as of 03:27, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA009172| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA009172, complete gene.| tag = OSJNBA0...")
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Gene Name

BGIOSGA009172

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA009172, complete gene.

LocusTag

OSJNBA0054K20.8

Ensembl Transcript ID

BGIOSGA009172-TA

Ensembl Protein ID

BGIOSGA009172-PA

Length

4772

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:35540018..35544789

Sequence Coding Region

35540018..35540192,35540281..35540375,35540461..35540582,35540690..35540947,35542105..35542366
,35542487..35542588,35543378..35544598,35544697..35544789

Genome Context

<gbrowseImage1> name=IndicaChromosome02:35540018..35544789 source=RiceIndica02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome02:35540018..35544789 source=RiceIndica02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGGCAAGGACGGCGGCGACCCCGGCGGCGGCGGCGGCGGCGGGTACCCGCTGGTGGCGGTGTGCATCGACAAGGACAAGAACAGCCAGAACGCCCTCAAGTACGCCACGGAGTCGCTCGCCCACAAGGGCCAGACCATCGTGCTCGTCCACGTCCACACCAAGGGCTCCTCAGGTGGCGTGGAGGACGCGGCCGGGTACAAGCAGCCGTCGGACCCGCAGATGAAGGACCTGTTCCTCCCGTTCCGCTGCTTCTGCACGCGGAAAGACATCCACTGCAAGGACGTGGTGCTGGACGACCACGACGTGTCCAAGGCGATCGTCGAGTTCGCCGCGCACGCCGCCATCGAGAAGCTCGTCGTCGGCGCCACCGCCAGGGGCGGCTTCGTCAGATTCAAGGCGGAGATCTCGAGCAGCATCTCCAAGACGGCGCCGGACTTCAGCACCGTGTACGTCGTCTCCAAAGGCGGCAAGGTGACGTCGGTGCGGCAGGCCGTCCGCCAGGCGCCGGCCGTCTCGCCGCTCCGCACAATGATCCAGGGCCCCAAGCCCGATAACGTGTCCACGCAGAAATGGACGCCGCCGCCTCCTCCGTCCACGACGAGACCTGACATCGCCGGGACACCGAAGATACAGGACAACTTCATTATGTCGCCGTTCGCGAGGGGGGCGAACACGTCGGTGAGGAAGGCGTTCCCGGACTACTCGATGCCGGAGTCGTCGGACATCTCCTTCATCAGCTCCGGCCCTCGCCGGAGCTTGGACCGGTACCCGCCGCGGCTGTCGTCCGGTTCGGACGCCCACGACCACCACAGCTTCGAGGCGACGCGGCCGCCCAGCATGTGGGGCGGCGACTCCTTCGGCAGCGACTCCCAGTCCAGCAACTCCTCCTTCGCTTCCTCCCTTCCCATGGAGGACATGGAGGCCGAGATGAAGCGGCTGCGGCTTGAGCTCAAGCAGACCATGGACATGTACAGCACCGCGTGCAAGGAGGCGCTCACGGCTAAACAGAAGGCGATGGAGCTGCAGCGCTGGAAGACGGAGGAGGAGCAGCGGTCGCACGAGACGCGGCTGACGGAGGAGTCGGCCATGGCGCTGATCGAGCAGGAGAAGGCGAAGGCGAGGGCGGCCATCGAGGCGGCGGAGGCGTCGCAGCGGCTGGCTGAGATGGAGGCGCAGAAGCGGATCAGCGCGGAGATGAAGGCGCTCAAGGAGACCGAGGAGCGTCTCAAGTCCATGGGCGGCGGCGGCTCGCGCGGCACGGTCCGGTACCGCAAGTACACCATCGAGGAGATCGAGCTCGCCACCGAGCACTTCGCCGACGGCCGCAAGATCGGCGAGGGCGGCTATGGCCCGGTGTACAAGGGCCACCTGGACCACACGCCGGTGGCCATCAAGGTGCTCCGCCCCGACGCCGCCCAGGGGAGGTCGCAGTTCAACCAGGAGGTGGAGGTGCTCAGCTGCATCCGCCACCCCAACATGGTGCTCCTCCTCGGCGCGTGCCCGGAGTACGGCTGCCTCGTCTACGAGTACATGGCCAACGGCAGCCTCGACGACTGCCTGTTCCGGCGCGGCGGCGGCCCGGTCATCCCGTGGCAGCACCGCTTCCGCATCGCCGCCGAGATCGCCACCGGCTTGCTCTTCCTCCACCAGACCAAGCCCGAGCCGCTCGTCCACCGCGACCTCAAGCCGGGCAACATCCTCCTCGACCGCAACTACGTCAGCAAGATCAGCGACGTCGGCCTCGCCCGCCTCGTCCCGCCCTCCGTCGCCGACAGCGTCACGCAGTGCCACATGACGTCAGCGGCGGGGACCTTCTGCTACATCGACCCGGAGTACCAGCAGACGGGCATGCTCGGCGTCAAGTCGGACGTCTACTCCCTCGGCGTCATGCTGCTCCAGATCGTCACCGCGAAGCCGCCCATGGGGCTCACCCACCACGTCGCGCGCGCGCTCGACCACGGCACCATCGTCGACATGCTCGACCCGGCCGTCCACGACTGGCCCGTCGACGAGGCGCGCTGCTTCGCCGAGATATCCATCCGCTGCTGCGAGCTCCGCCGGAAGGACCGCCCCGACCTCGCCACCGTCGTGCTCCCGGAGCTCAACCGCCTCCGCGCCCTCGGCGAGGACAACATGCAGCTCTGCAACACCATGAGCGGCGGCGGCCGGAGCAGCATGCACAGCTCGCCCTACAACAGCAACTCCTCCATGCATCAACCTCATCGACAAACCGATATGGCGATTGAGCACAGCGTAGGGAGGTCGTCGTACGACGCGGACACGAGCCAGCAAGCCATGCAGGGACGAAGGCTCAACTACAACTAA</cdnaseq>

Protein Sequence

<aaseq>MGKDGGDPGGGGGGGYPLVAVCIDKDKNSQNALKYATESLAHKGQTIVLVHVHTKGSSGGVEDAAGYKQPSDPQMKDLFLPFRCFCTRKDIHCKDVVLDDHDVSKAIVEFAAHAAIEKLVVGATARGGFVRFKAEISSSISKTAPDFSTVYVVSKGGKVTSVRQAVRQAPAVSPLRTMIQGPKPDNVSTQKWTPPPPPSTTRPDIAGTPKIQDNFIMSPFARGANTSVRKAFPDYSMPESSDISFISSGPRRSLDRYPPRLSSGSDAHDHHSFEATRPPSMWGGDSFGSDSQSSNSSFASSLPMEDMEAEMKRLRLELKQTMDMYSTACKEALTAKQKAMELQRWKTEEEQRSHETRLTEESAMALIEQEKAKARAAIEAAEASQRLAEMEAQKRISAEMKALKETEERLKSMGGGGSRGTVRYRKYTIEEIELATEHFADGRKIGEGGYGPVYKGHLDHTPVAIKVLRPDAAQGRSQFNQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDCLFRRGGGPVIPWQHRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADSVTQCHMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGVMLLQIVTAKPPMGLTHHVARALDHGTIVDMLDPAVHDWPVDEARCFAEISIRCCELRRKDRPDLATVVLPELNRLRALGEDNMQLCNTMSGGGRSSMHSSPYNSNSSMHQPHRQTDMAIEHSVGRSSYDADTSQQAMQGRRLNYN</aaseq>

Gene Sequence

<dnaseqindica>1..175#264..358#444..565#673..930#2088..2349#2470..2571#3361..4581#4680..4772#ATGGGCAAGGACGGCGGCGACCCCGGCGGCGGCGGCGGCGGCGGGTACCCGCTGGTGGCGGTGTGCATCGACAAGGACAAGAACAGCCAGAACGCCCTCAAGTACGCCACGGAGTCGCTCGCCCACAAGGGCCAGACCATCGTGCTCGTCCACGTCCACACCAAGGGCTCCTCAGGCAACCACTGCATCCCCCGGACCCCCGCCGCTGAAATCTCTCGTCGGATTTCAAGTTTTTCTCTGACGATGCACGCGCGCGTGTGCAGGTGGCGTGGAGGACGCGGCCGGGTACAAGCAGCCGTCGGACCCGCAGATGAAGGACCTGTTCCTCCCGTTCCGCTGCTTCTGCACGCGGAAAGACGTAACGCGACGCGTCCATTCTCGTACGGTGCAGCACGGCGTGGTGCAATAACTAATGGGGGTTTTTCTCGTGGCTGGGCTCGCAGATCCACTGCAAGGACGTGGTGCTGGACGACCACGACGTGTCCAAGGCGATCGTCGAGTTCGCCGCGCACGCCGCCATCGAGAAGCTCGTCGTCGGCGCCACCGCCAGGGGCGGCTTCGTCAGGTAACCAACCAACCAATTCAGTCTACTCATCTCATCTCGATCGATCGACTCTCAAAAAGCAGCTGTCGAGGAAACCGGGGTGAATTTGGTTTGTGGCATTTGAAAAGATTCAAGGCGGAGATCTCGAGCAGCATCTCCAAGACGGCGCCGGACTTCAGCACCGTGTACGTCGTCTCCAAAGGCGGCAAGGTGACGTCGGTGCGGCAGGCCGTCCGCCAGGCGCCGGCCGTCTCGCCGCTCCGCACAATGATCCAGGGCCCCAAGCCCGATAACGTGTCCACGCAGAAATGGACGCCGCCGCCTCCTCCGTCCACGACGAGACCTGACATCGCCGGGACACCGAAGATACAGGACAACTTCATTATGTAAGTCGAGGGGAAAGTATTTTCTATGCCTAGACGTCACGACACCTAGGTATATACATGCGGTTTAAATAATAATATAAAAAATCATAAAATTTGACGAGATAAATTGTGAATATAAAACATTATACAAACTGGCAAATATAAATTTGATTTACATATAAAGAAATAAAAATAATAAATTGTATATGCATTGTACATGTAATATTAACTACTTCCTCTGTTTTATAATGTTTTATATTATAAAATTTCCTACCACTGTCTACATTCATATATATGTTAATGAATATATTGTAAAACAATGTACGTCTTATCTTCTAGTTAGTTGAGTTGCTGGCTAGATAATAGGGTAGTTGAGATGGATAACATCCGTTGTAACAACTTGATCATATTCTCTGTAAGTGCCACGTCAAGGGCTGTTCTTGACAATATAAATACAATCACGCGGCCTCTCCGGGAGGTGAGAACGCTTCCAACTTTACATATATATGTGTGTGGGGGGGGGCAATGTTAGAAAGTCTTATAACCTGAAATGGATGTAGTATATATCTTTTTTTTAAGTGAACGTAATATTACTATCTGATTTAGGCCCTTTTTGTTTAGGCTTAGATTTATTTGCCTAGACTTTTAAGTTAGCTTATTGGCTTATATGATTTATAAGCCGGTGGATTTAATGTCCTAAGTTTAGTAGTTGAGTCATACATCTACCTCACATAAGCCAAAAAAGCTTCTCCAACCTAGCTTTTGGCTTAATAGTGTTAAAGTGGCTTATGGCTTCAAAAAAGCCAAATGAAAAAGCTGCTTGTTTGTTTAGGCTTAGACTTTTCGACTTATAAATTGGCTTATAAGCCTAAACAAAGAGGGCCTTAGTCTAGATGTCTTGTATGTTTGTCTATAAAATTATATCATCTTAATTGATATTATTTTTTAAATCTTTTTTCTATAACTATTTGAGTAGTATGCAAATAACGGGTGCCGACACCTAGATGTAGAAAAACTCATTCCGTAAGTTTAAGTTAGTTTCTATAACTATTTGAGCAGTATACAAATAACGGGTGCTGACACCTACACATAAAAAAACTCTTTCCGTAAGCTTAAGCTAGGGGGGAAGAATGGATGAGAAACAAGAAGCTAAGCTTGTGGCATTTGTGTGGAGACAGGTCGCCGTTCGCGAGGGGGGCGAACACGTCGGTGAGGAAGGCGTTCCCGGACTACTCGATGCCGGAGTCGTCGGACATCTCCTTCATCAGCTCCGGCCCTCGCCGGAGCTTGGACCGGTACCCGCCGCGGCTGTCGTCCGGTTCGGACGCCCACGACCACCACAGCTTCGAGGCGACGCGGCCGCCCAGCATGTGGGGCGGCGACTCCTTCGGCAGCGACTCCCAGTCCAGCAACTCCTCCTTCGCTTCCTCCCTTCCCATGGTACACACAATAATGCAAGCTAGCTAGCTAGTACAGGCTAGATTTTTGTTTGCATCAGATGAGATTTCGTCGCCATGATCGATCGTTGTGATCGATCTCTCACGTACGTACATATACCAGGAGGACATGGAGGCCGAGATGAAGCGGCTGCGGCTTGAGCTCAAGCAGACCATGGACATGTACAGCACCGCGTGCAAGGAGGCGCTCACGGCTAAACAGAAGGTTAGCGATGAACCATTGATCAACCAAGAAATTATAAGCATCGCAACTTTATTGTTGTTTGCATATCATTTAGACCCTGTTTAGATGGGACAAAAACTTTTTAGTCCTATCACATCGGATGTTTAGACACTAATTTTAAATATTAAACGTAGATTATTAATAAAACCCATTCTATAACCTTGGATTAATTCGCGAGACGAATCTATTGAGTCTAATTAATCCATGATTAGCCTATGTGATGCTACAGTAAACATGCGCTAATTATAGATTAATTAGGTTTAAAAAATTTGTCACGCGAATTAACTCTCATTTATGTAATTAGTTTTATAAGATGCCTATGTTTAATACTCCAAATTCATCCGATATAACAGGACTGAAGTAGTTTAGTCACTGGATCCAAACACCACCTTAAAAGGTTATAAAAAAGTTGAAAAGAAATTTAAAAGATAGATTATATGTGATAGGTCACTCTACAAACATGCAGGTTAAAATTCAACTTCTATAAATTAAAAATATATTAATTAATTAAACTATAAATAGTTAATGTGTATCCACATTTAAATTTGTTTTTTCGTTGCAGTTAAATTTGATTTGTGGATGGATTTATCACATATTAATCTATTTTGTTTTTTCCTCATATTTTTTTCATAACCATTTGGGTTATATGCAGTCAATGAGTGAATCTCCTATCATGAATTTAGAATAGTTTCCCACGTTATTGACATGTTACGTTTGGATTGTGGAAGTTGAGAAGAGTTGATGTGATCGAGTGTTTGATGATGCGTGCAGGCGATGGAGCTGCAGCGCTGGAAGACGGAGGAGGAGCAGCGGTCGCACGAGACGCGGCTGACGGAGGAGTCGGCCATGGCGCTGATCGAGCAGGAGAAGGCGAAGGCGAGGGCGGCCATCGAGGCGGCGGAGGCGTCGCAGCGGCTGGCTGAGATGGAGGCGCAGAAGCGGATCAGCGCGGAGATGAAGGCGCTCAAGGAGACCGAGGAGCGTCTCAAGTCCATGGGCGGCGGCGGCTCGCGCGGCACGGTCCGGTACCGCAAGTACACCATCGAGGAGATCGAGCTCGCCACCGAGCACTTCGCCGACGGCCGCAAGATCGGCGAGGGCGGCTATGGCCCGGTGTACAAGGGCCACCTGGACCACACGCCGGTGGCCATCAAGGTGCTCCGCCCCGACGCCGCCCAGGGGAGGTCGCAGTTCAACCAGGAGGTGGAGGTGCTCAGCTGCATCCGCCACCCCAACATGGTGCTCCTCCTCGGCGCGTGCCCGGAGTACGGCTGCCTCGTCTACGAGTACATGGCCAACGGCAGCCTCGACGACTGCCTGTTCCGGCGCGGCGGCGGCCCGGTCATCCCGTGGCAGCACCGCTTCCGCATCGCCGCCGAGATCGCCACCGGCTTGCTCTTCCTCCACCAGACCAAGCCCGAGCCGCTCGTCCACCGCGACCTCAAGCCGGGCAACATCCTCCTCGACCGCAACTACGTCAGCAAGATCAGCGACGTCGGCCTCGCCCGCCTCGTCCCGCCCTCCGTCGCCGACAGCGTCACGCAGTGCCACATGACGTCAGCGGCGGGGACCTTCTGCTACATCGACCCGGAGTACCAGCAGACGGGCATGCTCGGCGTCAAGTCGGACGTCTACTCCCTCGGCGTCATGCTGCTCCAGATCGTCACCGCGAAGCCGCCCATGGGGCTCACCCACCACGTCGCGCGCGCGCTCGACCACGGCACCATCGTCGACATGCTCGACCCGGCCGTCCACGACTGGCCCGTCGACGAGGCGCGCTGCTTCGCCGAGATATCCATCCGCTGCTGCGAGCTCCGCCGGAAGGACCGCCCCGACCTCGCCACCGTCGTGCTCCCGGAGCTCAACCGCCTCCGCGCCCTCGGCGAGGACAACATGCAGCTCTGCAACACCATGAGCGGCGGCGGCCGGAGCAGCATGCACAGCTCGCCCTACAACAGCAACTCCTCCATGCATCAACCTCATCGACAAACCGTAAGATCAATCCATCCACCATCTCCTGCAAATCTCGTTGCAACTTGCAAGCAAGAACATCAATTGAATCTTTGTTGCTGCATCTGATTAATCACCAGGATATGGCGATTGAGCACAGCGTAGGGAGGTCGTCGTACGACGCGGACACGAGCCAGCAAGCCATGCAGGGACGAAGGCTCAACTACAACTAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA009172