BGIOSGA010436

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Revision as of 09:16, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA010436| Description = BGIOSGA010436| Definition = Oryza sativa Indica Group BGIOSGA010436, complete gene.| tag = | tid = BGIOSGA010436-TA|...")
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Gene Name

BGIOSGA010436

Description

BGIOSGA010436

Definition

Oryza sativa Indica Group BGIOSGA010436, complete gene.

LocusTag

'

Ensembl Transcript ID

BGIOSGA010436-TA

Ensembl Protein ID

BGIOSGA010436-PA

Length

3748

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:22498911..22502658

Sequence Coding Region

22502131..22502658,22501183..22501800,22501001..22501050,22500612..22500658,22498911..22500502

Genome Context

<gbrowseImage1> name=IndicaChromosome03:22498911..22502658 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:22498911..22502658 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCAGATACTCGATCATATGCCGAGGATGAAACCAAGCGCCCTACGGAGGAGGAGACTGGGCGTGATGGAGAGATGGGATCCGAACCAAATCTGGAAGAGAGATTGAAGAGGTTGAATATGCATGGGGAGGAGGAAACTGACCTAGATTTCTCGGAGGAATTGGAAGGGCTGATCAAGGACGTACGCTGGCTCGCTCTTTTTAGGGTTTATACTACAAAACCCTTTAGCCACTCAGCGCTATTGAATGCTATGAGAAACGCCTGGTCTTCGGCACAGGATATCTCGTTTAAGGTAATGGATTCAAATCTCTTTATGGTACAATTTCAATGCCTTGGTGATTGGAACAGAGTCATGGAAGGAGGTCCATGGATCTTTAGAGGAGCTCCTGTAGTCCTTAAAGAATATGATGGCTTCACTAATGTGTTTGATTATAAGTTGGATAAAATTCCAGTTTGGACGCGCATTCATGGGGTGCCTGATGGGTTGATGAAGAAGAGAGAACTAGCAGAGAGGGTTGCTAAGAAGAGAAGAAGAAGAAAGAAAATTAAGGGACTTATTGATGAGAATGGATGTTTTCAAACCGATGAAGACAGAATGAGTAACATAGTTTATGGGTACTTCCAAAATCTCTTCTCGGCTGAGGTTACACAAATAGATGGATCTTCTTTGCTGGATGTACAGAGAAAAGTAACGGGAGATATGAATTTTGGATTACTAGCACCGTATACAGCTGAAGAGGTGAAAAATGCTCTGTTCAGTATAGGTGATCTGAAAGCTCCGGGACCAGATGGGCTGCACGCTGTTTTCTATAAAAGATTCTGGGATATGTTGGAGAGTGATCTGGTTAAAGAAGTTCTTGATGCAATAAATACAATGAAAATTCCAGATGGATGGAATGACACAACTGTTGTCATGATTCCAAAGGTTGATAAACCAGACAGAGTAACTCAATTTAGACCCATTAGCTTATGTAATGTGGTCTATAAAATAATTTCTAAGATGTTAGCAAACCGGCTAAAGTGTCTTCTCCCTGAAATAATAAGTGATCAGCAGAGTGCTTTTGTCCCGGGCAGGTTGATCACGGATAATGTTTTGGTAGCTTATGAGTGCTTACACACAATGAAAAAGAAGAAGGAAGAAAAGTTCAGTACAGGGGTGGAAATTTTCCAAATGGTGGTTAATTTGAACAGAGGGAAAAAATCCAGTGGAAGGCGGAAGATCGCAGATATATTTCTTNCAGTGATGATAGGTGTTGATAAGAGTGATTGTTTTCGACACCTGATTGATAGAGTGAACAACCGGATAAATGGACGGAAGGAGAAGATGTTGAGTACAGGGGGGAAGGAAGTGCTTATAAAATCAATCGCTCAGGCTATACCAGTTTTTGCGATGTCTGTTTTCAGGATACCGAAAAAAATATGTGACTGTATCTCTGAAGCAATCGCGCGATTCTGGTGGGGTGATGATGAAAATCACAGAAGAATACATTGGAAGGCTTGGTGGAGGATGTGCATTCCAAAACAAAGAGGTGGTCTGGGTTTTAGGGACTTATATTGTTTTAATCGAGCGATGCTTGCTAAACAGATATGGAGATTCCTGTGTGATCCTGACTCACTGTGTGCAAGGGTAATGCGATGCAAATACTATCCGGATGGAAATATTTTGAGGGCAAGACCGAAAAAGGGTAGTTCTTATGCTTGGCAAAGCATTCTATCTGGTTCGGAATGCTTTAAAGGCTACATATGGAGAATTGGAGATGGATCCCAAGTTAATATATGGGAAGATAGTTGGATACCTTCAAGCAGTAATGGGAAGGTTTTAACACCTCGAGGAAGGAACATTATCACAAAAGTTGAAGAACTGATCAATCCAGTAAGTGGTGGATGGGATGAAGACCTGATAGATACCTTGTTCTGGCCTATTGATGCTAACCGAATTCTACAAATCCCTATTTCAGCCGGGAGAGAGGATTTTGTTGCTTGGCATCACACTCGGTCAGGAATTTTTTCAGTTCGGTCTGCTTACCATTGTCAGTGGAATGCAAAGTTTGGGAGCAAGGAGAGACTGCCTGATGGTGCAAGTAGCTCGAGCAGGCCGGTCTGGGACAACCTGTGGAAACTGGAAAATCCACCCAAGATAAAAATCTTTGCATGGAGAATGTTGCATGGTGTGATTCCCTGTAAAGGCATCTTAGCTGACAAACACATTGCAGTCCAAGGTGGTTGTCCGGTTTGTTCTTCAGGAGTTGAAGATATCAAGCATATGGTTTTTACTTGTAGAAGAGCAAAGTTGATTTGGAAGCAGCTAGGCATATGGAGCAGAATACAACCGATTCTGGGTTTCGACCGGTCAGGATCAGTTCTGGTGGAGGAGATGATAAGGAAGGGTGGGAAGGTTTCGCATCTGAATGCTATTGGAATGACGGAATTGATCTTCACGGGAGCTTGGTATATTTGGTGGGAGAGAAGACAGTTGGTGCAGGGGGAACGAATACAGAACACTGCTCGGTCGGCAATGTCTATTGCTACCTTAACCACAAACTATATGTTGTCAAATAAGAAAGGTAAAACAAAAATTCAGAACGGTTGGAAGAAACCTCCTGAAGGAATGCTAATGATCAATGTTGATGCTGCCTTCGATTTTGATTCAGGAAGTGGAGGTACTGGGGTGGTGTTGAGAGATCACTTGGGAGCTTGTGTTGCGGCTTCGCAAGCTTTTCTTCCACATGTCCTTGATGCACCGATGGCAGAGGCTTTTGCGCTGAGAGATGGGCTGTCCCTGGCACAACACATTGGTGCTAAAAATGTTATAGTACAAACTGATTGTATGTAG</cdnaseq>

Protein Sequence

<aaseq>MADTRSYAEDETKRPTEEETGRDGEMGSEPNLEERLKRLNMHGEEETDLDFSEELEGLIKDVRWLALFRVYTTKPFSHSALLNAMRNAWSSAQDISFKVMDSNLFMVQFQCLGDWNRVMEGGPWIFRGAPVVLKEYDGFTNVFDYKLDKIPVWTRIHGVPDGLMKKRELAERVAKKRRRRKKIKGLIDENGCFQTDEDRMSNIVYGYFQNLFSAEVTQIDGSSLLDVQRKVTGDMNFGLLAPYTAEEVKNALFSIGDLKAPGPDGLHAVFYKRFWDMLESDLVKEVLDAINTMKIPDGWNDTTVVMIPKVDKPDRVTQFRPISLCNVVYKIISKMLANRLKCLLPEIISDQQSAFVPGRLITDNVLVAYECLHTMKKKKEEKFSTGVEIFQMVVNLNRGKKSSGRRKIADIFLXVMIGVDKSDCFRHLIDRVNNRINGRKEKMLSTGGKEVLIKSIAQAIPVFAMSVFRIPKKICDCISEAIARFWWGDDENHRRIHWKAWWRMCIPKQRGGLGFRDLYCFNRAMLAKQIWRFLCDPDSLCARVMRCKYYPDGNILRARPKKGSSYAWQSILSGSECFKGYIWRIGDGSQVNIWEDSWIPSSSNGKVLTPRGRNIITKVEELINPVSGGWDEDLIDTLFWPIDANRILQIPISAGREDFVAWHHTRSGIFSVRSAYHCQWNAKFGSKERLPDGASSSSRPVWDNLWKLENPPKIKIFAWRMLHGVIPCKGILADKHIAVQGGCPVCSSGVEDIKHMVFTCRRAKLIWKQLGIWSRIQPILGFDRSGSVLVEEMIRKGGKVSHLNAIGMTELIFTGAWYIWWERRQLVQGERIQNTARSAMSIATLTTNYMLSNKKGKTKIQNGWKKPPEGMLMINVDAAFDFDSGSGGTGVVLRDHLGACVAASQAFLPHVLDAPMAEAFALRDGLSLAQHIGAKNVIVQTDCM</aaseq>

Gene Sequence

<dnaseqindica>1..528#859..1476#1609..1658#2001..2047#2157..3748#ATGGCAGATACTCGATCATATGCCGAGGATGAAACCAAGCGCCCTACGGAGGAGGAGACTGGGCGTGATGGAGAGATGGGATCCGAACCAAATCTGGAAGAGAGATTGAAGAGGTTGAATATGCATGGGGAGGAGGAAACTGACCTAGATTTCTCGGAGGAATTGGAAGGGCTGATCAAGGACGTACGCTGGCTCGCTCTTTTTAGGGTTTATACTACAAAACCCTTTAGCCACTCAGCGCTATTGAATGCTATGAGAAACGCCTGGTCTTCGGCACAGGATATCTCGTTTAAGGTAATGGATTCAAATCTCTTTATGGTACAATTTCAATGCCTTGGTGATTGGAACAGAGTCATGGAAGGAGGTCCATGGATCTTTAGAGGAGCTCCTGTAGTCCTTAAAGAATATGATGGCTTCACTAATGTGTTTGATTATAAGTTGGATAAAATTCCAGTTTGGACGCGCATTCATGGGGTGCCTGATGGGTTGATGAAGAAGAGAGAACTAGCAGAGAGGGTTGCTAAGAAGGTGGGTGAACAACCATTCACAGTTATAGTAGATGAGGGGAGAATCAATCCTGTTAAATACCTCAGAGCTAGGGTTTTCTTAGATTTGAGTAAACCCCTCGTTCGGTTTGTCCCAATCACGATCAAGGAAAGAATATTGTATCCAGTAACTTATGAAAGGATGCCAACGTTCTGTTACTTCTGTGGAATGATCGGATGAGCAAAAAGAGATTTTGTTACGCATTGAACTCATTCTAGAGCAAGAGGAAATCTACTGGATTCAGAGAGCGAGAGCAAATGGTTGAAACATGGTGACCGTAACACCAGTTTCTTTCAACAATTTGCTGCACAGAGAAGAAGAAGAAAGAAAATTAAGGGACTTATTGATGAGAATGGATGTTTTCAAACCGATGAAGACAGAATGAGTAACATAGTTTATGGGTACTTCCAAAATCTCTTCTCGGCTGAGGTTACACAAATAGATGGATCTTCTTTGCTGGATGTACAGAGAAAAGTAACGGGAGATATGAATTTTGGATTACTAGCACCGTATACAGCTGAAGAGGTGAAAAATGCTCTGTTCAGTATAGGTGATCTGAAAGCTCCGGGACCAGATGGGCTGCACGCTGTTTTCTATAAAAGATTCTGGGATATGTTGGAGAGTGATCTGGTTAAAGAAGTTCTTGATGCAATAAATACAATGAAAATTCCAGATGGATGGAATGACACAACTGTTGTCATGATTCCAAAGGTTGATAAACCAGACAGAGTAACTCAATTTAGACCCATTAGCTTATGTAATGTGGTCTATAAAATAATTTCTAAGATGTTAGCAAACCGGCTAAAGTGTCTTCTCCCTGAAATAATAAGTGATCAGCAGAGTGCTTTTGTCCCGGGCAGGTTGATCACGGATAATGTTTTGGTAGCTTATGAGTGCTTACACACAATGAAAAAGAAGAAGGAAGAAAAGGTCTGTGTGCAGTGAAGCTAGATATGCACAAAGCATATGATCGGGTTGAATGGATGTACCTGGAACAAATCATGTTGAAATTAGGCTTTGATAGCCGCTGGGTTCAGTTAATAATGTCTTGTGTTTCTTCAGTTCAGTACAGGGGTGGAAATTTTCCAAATGGTGGTTAATTTGAACAGAGGGTTAATTTAAGCCCTTTTCTCGGAAGGGCCTTTAAGGGCAGGGGGGATCCCCTTATCCCCAATACCTTTTTTTTTGGTGGGTTGGCTTGGAGGGGTCTAATCGAAGTATTGCTTGGCAAGGGAGCTTGAAAATTAAAAGGAAGAATTTAATTGGGAAATCAAGAAGTGGTGGTCGGTGGAAAGCAACCGGATGGAATATTCCACAACTTGGTATATATTGGCGGGATGGAATTCTCTTAATTATTGGATGGCCAGGCAGAAACAGGAATTAATGGCTGGATTCATTCTGGAAAGGCAAATTTTTGGGATTATTATAACTGTGTTCCAAATTTCTGGGAACAGGAAAAAATCCAGTGGAAGGCGGAAGATCGCAGATATATTTCTTNCAGGTAGAAAATATCTGTGGAGTCGAAAGAGATTAAGCGTGTGTGGTCTGGTGGAGTCTTCTAGGATATATATTGAACTGAAGCTTTAAACGACAAATATCTGGACTCCCAGTGATGATAGGTGTTGATAAGAGTGATTGTTTTCGACACCTGATTGATAGAGTGAACAACCGGATAAATGGACGGAAGGAGAAGATGTTGAGTACAGGGGGGAAGGAAGTGCTTATAAAATCAATCGCTCAGGCTATACCAGTTTTTGCGATGTCTGTTTTCAGGATACCGAAAAAAATATGTGACTGTATCTCTGAAGCAATCGCGCGATTCTGGTGGGGTGATGATGAAAATCACAGAAGAATACATTGGAAGGCTTGGTGGAGGATGTGCATTCCAAAACAAAGAGGTGGTCTGGGTTTTAGGGACTTATATTGTTTTAATCGAGCGATGCTTGCTAAACAGATATGGAGATTCCTGTGTGATCCTGACTCACTGTGTGCAAGGGTAATGCGATGCAAATACTATCCGGATGGAAATATTTTGAGGGCAAGACCGAAAAAGGGTAGTTCTTATGCTTGGCAAAGCATTCTATCTGGTTCGGAATGCTTTAAAGGCTACATATGGAGAATTGGAGATGGATCCCAAGTTAATATATGGGAAGATAGTTGGATACCTTCAAGCAGTAATGGGAAGGTTTTAACACCTCGAGGAAGGAACATTATCACAAAAGTTGAAGAACTGATCAATCCAGTAAGTGGTGGATGGGATGAAGACCTGATAGATACCTTGTTCTGGCCTATTGATGCTAACCGAATTCTACAAATCCCTATTTCAGCCGGGAGAGAGGATTTTGTTGCTTGGCATCACACTCGGTCAGGAATTTTTTCAGTTCGGTCTGCTTACCATTGTCAGTGGAATGCAAAGTTTGGGAGCAAGGAGAGACTGCCTGATGGTGCAAGTAGCTCGAGCAGGCCGGTCTGGGACAACCTGTGGAAACTGGAAAATCCACCCAAGATAAAAATCTTTGCATGGAGAATGTTGCATGGTGTGATTCCCTGTAAAGGCATCTTAGCTGACAAACACATTGCAGTCCAAGGTGGTTGTCCGGTTTGTTCTTCAGGAGTTGAAGATATCAAGCATATGGTTTTTACTTGTAGAAGAGCAAAGTTGATTTGGAAGCAGCTAGGCATATGGAGCAGAATACAACCGATTCTGGGTTTCGACCGGTCAGGATCAGTTCTGGTGGAGGAGATGATAAGGAAGGGTGGGAAGGTTTCGCATCTGAATGCTATTGGAATGACGGAATTGATCTTCACGGGAGCTTGGTATATTTGGTGGGAGAGAAGACAGTTGGTGCAGGGGGAACGAATACAGAACACTGCTCGGTCGGCAATGTCTATTGCTACCTTAACCACAAACTATATGTTGTCAAATAAGAAAGGTAAAACAAAAATTCAGAACGGTTGGAAGAAACCTCCTGAAGGAATGCTAATGATCAATGTTGATGCTGCCTTCGATTTTGATTCAGGAAGTGGAGGTACTGGGGTGGTGTTGAGAGATCACTTGGGAGCTTGTGTTGCGGCTTCGCAAGCTTTTCTTCCACATGTCCTTGATGCACCGATGGCAGAGGCTTTTGCGCTGAGAGATGGGCTGTCCCTGGCACAACACATTGGTGCTAAAAATGTTATAGTACAAACTGATTGTATGTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA010436