BGIOSGA015351

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Revision as of 04:12, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA015351| Description = BGIOSGA015351| Definition = Oryza sativa Indica Group BGIOSGA015351, complete gene.| tag = | tid = BGIOSGA015351-TA|...")
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Gene Name

BGIOSGA015351

Description

BGIOSGA015351

Definition

Oryza sativa Indica Group BGIOSGA015351, complete gene.

LocusTag

'

Ensembl Transcript ID

BGIOSGA015351-TA

Ensembl Protein ID

BGIOSGA015351-PA

Length

5917

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:12399503..12405419

Sequence Coding Region

12405192..12405419,12400016..12402044,12399503..12399546

Genome Context

<gbrowseImage1> name=IndicaChromosome04:12399503..12405419 source=RiceIndica04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome04:12399503..12405419 source=RiceIndica04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGATCCGGTGTCGGTAGCTGCAGTGGGATGGGCCATATCCACCGCAGGGTGGATCATCTCCCCCATCGTCGCCAAGCTCGTGAACAGCGTCTGCCCCCGCATAACCTTGAACGTGCCGAAGAAGATCCGCGACCTGGAGACCTGCACTCTCNCCTCGGCTGGCGCTCACTTCTGGGAGCACNTGGAGATCAGCCAGNTAGGCATGAGCTGNGAGAAATCTGGTGAAGCTGATGGTACCAAGTTAACGGCAGGATATTCAAGATGCCGTTTGAAAGAAAAACTAGATAAGATAGAGAAGCTAATTGAGAAAGCACAGGACATTACTAAGTTAGCTAACCTGCCAGGCAATAATAATGAAAGTGGCGATCATAGACGATACGTTGGTGTCACTGCCAAACATACATCGAAGCCCACCGCTGCATATCTGCCACGCAAGGTAATCGGTCGAGACAAGGATCGTGAGGAAATAATAAGTATGCTTCGTGATGAAAACCAGTCAAGTGCTGATAGATGTTTTTCCGTTATTGGCATTCACGGCATCCCTGGGTCTGGGAAGACAACTCTTGCACAGTATGTTTGCGAGTACGACGAGGAAGCCAACCACTTCGACATTGTGATGTGGATTCATGTCTCCCAGAATTTTGGCCTGGACACCATCTTGAGGGAGATGATTGAACAGGCTACAAAGCAACCATGCCCTCAGTTCAAAAGTCTTACTGCTTTACAGAAAAGATTGAAACAAGACCTGCGCGAAAAGCGTTTCCTGTTGGTACTAGATGATGTCGAGCATAATAAGGATATAAGCGAGGATGATCTTTCTGCATTGGAAGTTGGGGGAGCAGGAAGCAAGATTCTAGCAACCAGTCGAACTAGAGATGCTTTATTGGCTTTGGGTGCTGTGAGATCGAAATGCATTCCAATATCTAAGTTAGATGAGCATGTCTTCCGAGAATTGTTCTTGCAATATGCACTTGACGGTGCAGAGATATGTGAGCGAGATCGAATAGTACTGCAGATGATTGGGGCTGACATTGCAAAGAAACTGAAGGGATCACCTCTGGCAGCAAGAACAGTGGGAGGACAATTGCGTATAAGGCAAGATGTTGAGTTTTGGAGGAGTGTACGAGATAAGGATTTTTTCAGTGACGCAATGGAAGCTCTGCGGTGGAGCTACCAGCTTCTTGATGAGAGAGTTAGACGATGCTTTGCTTACTGCAGTATTTTTCCCAGAGGGCATCATTTGGGACGCAGTAAGTTAATTAACTTGTGGGCAGCAGAAGGGTTCATAAGCACAGAGGAAGTTGGAGGAGATTACTTCCACAAATTAGTGGCGACCTCGTTTCTGCAGCTCGAACGAAAGGACTCGTCGGGCGAGGAGTACTATTTACTTCATGATCTGCTGCAGGATTTAGCAGAGACGGTCGGACGTAGTGATTGCTGCAGAATTGAGGGTGGCTGCACAGGACAAGTTCCTCGAGACGATGTTCGCCATTTGTATATTAAGGCTTGTAATGGAGCAACAGTTGCTGGCAATAAAGCTTTCGAGAAAATGATTACCGAAAATATTGTCAAACTGAAGGAGCTGCGCACTCTGATCATTGACGGAGGGGAGACAGGAATTGAGGCAAAGGTGTTCGATGATATCTTCGACAGCTTGAAGTCTCTACGAGTACTGATTGTAGAGACACAGAGTAGAAGAACATTGCAAATCCCAGAATCTATTGGTTACTTAAAGTATCTACGATATCTTTCTATCGAGTATAGATGCCGTATATTTTTTCCGCGCACGGTTACAAAGCTTTACCACTTGCGGGTGCTTGATTTTGGTGAATATGGAATGTTGGAACGTAGTTGCTCCCCTGAAAATATGAGTAACCTTGTGAACTTGCAGAGAGTGGTAGGCCGTTCACTTGGGGATTTTCCAAACATAGGCAAGCTGACATTGCTCCGAACATTACCAACCTTCAGGGTGAAAAGGGACCTCCTGGGTTACGACATTAAGCAGCTGAAGCACCTAAACAAGCTCCAGGGAAAATTGGTGATCAGTGGTCTCCAACATGTTCGCAGCGAGGAGGAAGCCGTTGAAGCGAAGTTAGCTGAGAAGGAGCACCTCAAACAACTGACACTGGCCTGGGACGATGATAACCCAAGCAGTAACCACGATGCAGCAGTACTCGAGTGTCTATGCCCGCCAATGGGGCTTGAAGTCCTGGAAATCATAGGCTACCGTGGTTCATACCCTGGCTGGATGGTGGACGAGGCATCATGGCGCAATGGCGTTGCATCAGCAGGGCTTTAG</cdnaseq>

Protein Sequence

<aaseq>MDPVSVAAVGWAISTAGWIISPIVAKLVNSVCPRITLNVPKKIRDLETCTLXSAGAHFWEHXEISQXGMSXEKSGEADGTKLTAGYSRCRLKEKLDKIEKLIEKAQDITKLANLPGNNNESGDHRRYVGVTAKHTSKPTAAYLPRKVIGRDKDREEIISMLRDENQSSADRCFSVIGIHGIPGSGKTTLAQYVCEYDEEANHFDIVMWIHVSQNFGLDTILREMIEQATKQPCPQFKSLTALQKRLKQDLREKRFLLVLDDVEHNKDISEDDLSALEVGGAGSKILATSRTRDALLALGAVRSKCIPISKLDEHVFRELFLQYALDGAEICERDRIVLQMIGADIAKKLKGSPLAARTVGGQLRIRQDVEFWRSVRDKDFFSDAMEALRWSYQLLDERVRRCFAYCSIFPRGHHLGRSKLINLWAAEGFISTEEVGGDYFHKLVATSFLQLERKDSSGEEYYLLHDLLQDLAETVGRSDCCRIEGGCTGQVPRDDVRHLYIKACNGATVAGNKAFEKMITENIVKLKELRTLIIDGGETGIEAKVFDDIFDSLKSLRVLIVETQSRRTLQIPESIGYLKYLRYLSIEYRCRIFFPRTVTKLYHLRVLDFGEYGMLERSCSPENMSNLVNLQRVVGRSLGDFPNIGKLTLLRTLPTFRVKRDLLGYDIKQLKHLNKLQGKLVISGLQHVRSEEEAVEAKLAEKEHLKQLTLAWDDDNPSSNHDAAVLECLCPPMGLEVLEIIGYRGSYPGWMVDEASWRNGVASAGL</aaseq>

Gene Sequence

<dnaseqindica>1..228#3376..5404#5874..5917#ATGGATCCGGTGTCGGTAGCTGCAGTGGGATGGGCCATATCCACCGCAGGGTGGATCATCTCCCCCATCGTCGCCAAGCTCGTGAACAGCGTCTGCCCCCGCATAACCTTGAACGTGCCGAAGAAGATCCGCGACCTGGAGACCTGCACTCTCNCCTCGGCTGGCGCTCACTTCTGGGAGCACNTGGAGATCAGCCAGNTAGGCATGAGCTGNGAGAAATCTGGTGAAGTGAGCTTCAAGTCTGGCGTTTTCTATCTAGGTGTGAGAGACATCCGTNGGTATGATGCGGAGTNNACTGTCGTTCTGTGAGAATACAATCTAGCCCGGCTCCCAAGAAACGCNAAGTTCCCCTTGGGATTTTAATGNNATGTGTGGGTCCTCGTACCGGGTCGGGTCGTCCGTAATCGTCTGTTTCGCATCAGTTCAAGAGCATATACTCCCTGCGTACTGGTAAAGAAAGTCGTTTAGAACAGCGACACGGTCTTCAAGACACAACTTTGACTCTTTATTTTCTATAAAAATATTTATTGAAAAGTGATATATATATATATATACTTTTATGAAAGTATTTTTGAAGACAAATCTATTCATATAAGTTTTACATTTTCAAAGTTGAGAGTTATTAATGATTTATATTCCTAAGGTTTGACTTAAACATTGTTCTAAACGACTTTTTTTATAAGTATGGAGGGAGTACTTGATTAAAAAGAAAAACACACACACAAAGAGAGCACAGTACTTGGTTGTTCGTCTTTTTACGGATTGAGTTTTTTTATTTTTATTTTTGAAAGAGGATTAAACCCTGCCTGGCATGGAACGAAACCATAATGAGCAATCTGGTAGTTGAGAATCAGAAATCAGATCAACATCGCTGAAAGACAAACGTATTTTCTTTCCTTAAACAAAAGTCATGCCAACTCTGTGTGTGTTTGGTGGTGTGAATTTTCAACTCCACCTCGTTTTTTTTGCACGCTTCCTGTACTGTTAATAGAATTTGTATACGAAAGCTACTATAAAAAATCATATTAATCCACTTTCCTAAGCAAATAGTTAATATTTAATTTGTATACAAAAGTTACTTTAAAAAATTATATTAATCCATTTTTCCAAGCAAATATTTAATATTTAATTAATTATGTGCTAATGAGTTGTTCCGTTTTACGTGCGATAGGTATTAATGAGCTCTGCACTCAAGTTGCCGAACACAGTCTTAGTACAATACAAAATAACTAGAAGAAAGCTAAAGATACAAACAATATTTCTGTAAGAATTCAAGTCTTCATCATATAAATATTAAATTTCTGGCTTATAATATAGCCGTAATAATTATTATTTATTTCTGGCTTATAATATAGCCGTAATAATTCAAGTCAAATAATGGATGTGCGTGTTGTTGTGTTTGTTCATGTGCTTTTGTCGTGTAGTAAAAAAAGATATATAATATTTGGGTGAAACGGTGTACTCCCTCCGGTGTCATAATTATTAAAGTTTTAGAGGTCAAACTTTTTTTATAACTTTGACCATCAATAACTTTAAAAATATCTATTAACTTATTAAAGAAATAGAAAAAAAAAACCTCCACATTCGCTCTCATGGCCTAGAAATTCTCATATTAATCGGAGAAAAAGAAAAAACAGAGTCCATATAGGAATATACAATTTAAAAATAGCTGAAATTATGATTAAAAATATGGAATATAGGAAGATAAGAATATAGTCCATACCGGTAGACAATAGAACTAATAAAAATTCAGAATTAAAAAAAATAAGAAAACTAAAAGTAGAGATTAGAGTCAATATAGAAATAAGCAGAATAAAAAATATATAAGGAAAATTTATTGTATATAAGAACTTTTTTTAGAAAAAAAAAATGTGTCCGATCGGACAGCTGCATAGAATGATTAGTCTTGGAAGTCTTTTCCAAGGAAAAAAAAAACCTAAGCTGGGCTACAGTAACCGGGTATAGTACAAATCACAAGTGCTTATCTCGATCTATTCTCCCCGTTGCAACAAATCAAATCTCTAATGGTAGGTTCATACGGTCATACCTGCATACTCTATGCATTTATATGTCTATAATAGTATATCTTAGTCTAACAAAAAAAGGCCACCATATTCGCTTCCACTTTCTACAAATTTCCATATTAAATAGAAAAAAATAGAGTTCAAATGGAAATATATTTCAATATATCTGAAATTCAGAATAAAGAATTCTCTTCAACTACCTAAATGAAAATAAAACTATTTATAAATATAAATATAATTTAATATATATCTAAAATTTGGAATAAAAAATGAAGAAAATTTTAAGAAGAGTCTATGTTGAAATAAAATTTAAAAATATTAAAAATTTGGATTAAAAAGAATAATAGAGTCCATATAGAAATACAATTTTAAATAGATGGAATTCAGAATTAAAAATAATAAATATTGAAAGAAAGTATTAGAGCCCACACCTTTATATAATTTAGAACTAACTAAAATTTGAAATTGAAAAATAAAAATTAGAAGTCCATATAGAAATAAATTTATAATTGAAATTTAAAATTTTTAAAAAGAAATATTGGAAAAATAATTTAGAGTCTATATAAAAATATAATTTAGAAATAATAAAAATTCAAAATTATAAAAAAAGAATATTGGTAGCTAGCCGCGCAATTTGCGCGGGCCATCGTGCTAGTTTAGTTTAAAGGAACTAGAAAGAGATTTGTCTTTCAAAACACTATAATAAAGTAAACATATATTTATTTATTATATGCTCCCTCCATCTACTTTGATAGTCATAATTAATCTTGGCACACGGACCAAAGATAAGTAATTCTACTTATCATCCATTTAAACATTCTAATAGTTATTCCTCGTAAACAAGCGATTCATTAATATTTATATTTCTCGTTGTCCATGTAGCCAATCTTGTGTGGAAGAATGGAGAGACACGCATTAAATCCGAGAAATTCGTTAAGATGATAGGTTATTGGATTGAAATATGCCTATCAAAAATAAAAATTTCAGATTTGGAAATATGACTATAAAAAATAGATGGAGGGAGTATATTATAATAGAAAAAAATGTCAAAGATATATTTTGTAGACCGTGTCATTGTCCAAAACGTCAATTAAAATAAAACCTAAGAGAATATATATGTTAATATGATATTCTTGTTACATAACGTGTAAAATCTATTTTTCAGCAATAGGACACCATACATATACAAAAGTCAGCTCATTTTTTTTAGCTAGGAATTGTGTTGGAAATTTGGATAATTTGCAAATCTCTATGTACAATTGCACAGCGTCTCTTACATAGTTCAGATCAATTCAGACTACTTATTAATTCACTGTTCTCCAACTAGCTCAGTGTTTACTTGGATTTGTAGGCTGATGGTACCAAGTTAACGGCAGGATATTCAAGATGCCGTTTGAAAGAAAAACTAGATAAGATAGAGAAGCTAATTGAGAAAGCACAGGACATTACTAAGTTAGCTAACCTGCCAGGCAATAATAATGAAAGTGGCGATCATAGACGATACGTTGGTGTCACTGCCAAACATACATCGAAGCCCACCGCTGCATATCTGCCACGCAAGGTAATCGGTCGAGACAAGGATCGTGAGGAAATAATAAGTATGCTTCGTGATGAAAACCAGTCAAGTGCTGATAGATGTTTTTCCGTTATTGGCATTCACGGCATCCCTGGGTCTGGGAAGACAACTCTTGCACAGTATGTTTGCGAGTACGACGAGGAAGCCAACCACTTCGACATTGTGATGTGGATTCATGTCTCCCAGAATTTTGGCCTGGACACCATCTTGAGGGAGATGATTGAACAGGCTACAAAGCAACCATGCCCTCAGTTCAAAAGTCTTACTGCTTTACAGAAAAGATTGAAACAAGACCTGCGCGAAAAGCGTTTCCTGTTGGTACTAGATGATGTCGAGCATAATAAGGATATAAGCGAGGATGATCTTTCTGCATTGGAAGTTGGGGGAGCAGGAAGCAAGATTCTAGCAACCAGTCGAACTAGAGATGCTTTATTGGCTTTGGGTGCTGTGAGATCGAAATGCATTCCAATATCTAAGTTAGATGAGCATGTCTTCCGAGAATTGTTCTTGCAATATGCACTTGACGGTGCAGAGATATGTGAGCGAGATCGAATAGTACTGCAGATGATTGGGGCTGACATTGCAAAGAAACTGAAGGGATCACCTCTGGCAGCAAGAACAGTGGGAGGACAATTGCGTATAAGGCAAGATGTTGAGTTTTGGAGGAGTGTACGAGATAAGGATTTTTTCAGTGACGCAATGGAAGCTCTGCGGTGGAGCTACCAGCTTCTTGATGAGAGAGTTAGACGATGCTTTGCTTACTGCAGTATTTTTCCCAGAGGGCATCATTTGGGACGCAGTAAGTTAATTAACTTGTGGGCAGCAGAAGGGTTCATAAGCACAGAGGAAGTTGGAGGAGATTACTTCCACAAATTAGTGGCGACCTCGTTTCTGCAGCTCGAACGAAAGGACTCGTCGGGCGAGGAGTACTATTTACTTCATGATCTGCTGCAGGATTTAGCAGAGACGGTCGGACGTAGTGATTGCTGCAGAATTGAGGGTGGCTGCACAGGACAAGTTCCTCGAGACGATGTTCGCCATTTGTATATTAAGGCTTGTAATGGAGCAACAGTTGCTGGCAATAAAGCTTTCGAGAAAATGATTACCGAAAATATTGTCAAACTGAAGGAGCTGCGCACTCTGATCATTGACGGAGGGGAGACAGGAATTGAGGCAAAGGTGTTCGATGATATCTTCGACAGCTTGAAGTCTCTACGAGTACTGATTGTAGAGACACAGAGTAGAAGAACATTGCAAATCCCAGAATCTATTGGTTACTTAAAGTATCTACGATATCTTTCTATCGAGTATAGATGCCGTATATTTTTTCCGCGCACGGTTACAAAGCTTTACCACTTGCGGGTGCTTGATTTTGGTGAATATGGAATGTTGGAACGTAGTTGCTCCCCTGAAAATATGAGTAACCTTGTGAACTTGCAGAGAGTGGTAGGCCGTTCACTTGGGGATTTTCCAAACATAGGCAAGCTGACATTGCTCCGAACATTACCAACCTTCAGGGTGAAAAGGGACCTCCTGGGTTACGACATTAAGCAGCTGAAGCACCTAAACAAGCTCCAGGGAAAATTGGTGATCAGTGGTCTCCAACATGTTCGCAGCGAGGAGGAAGCCGTTGAAGCGAAGTTAGCTGAGAAGGAGCACCTCAAACAACTGACACTGGCCTGGGACGATGATAACCCAAGCAGTAACCACGATGCAGCAGTACTCGAGTGTCTATGCCCGCCAATGGGGCTTGAAGTCCTGGAAATCATAGGCTACCGTGGTTCATACCCTGGCTGGATGGTGGGTAAGCATAGTGCTCAACTGTACCTTCAGAAACTTGAGCTCCGCCAATGCAGCCCACTGGGACCTGCTCCTAGACTTTTTGAGTGCTTCCTTCATCTGGAATCGCTCTGTCTCTCTCACTTAAGCTGGCACACCTTGCCAGATAACATGGAGCAAGTCAGGACTCTCAAAGTTCTGATGATCTCCCACTGCAAGAATATGAAGGTGCTGCCAACACTGCCGCAGTCTCTTTCGCGTTTTAAACTCTCAAACTGCGGACACGAGTTCACAAGGTCTTGCAAACAGAATGGAGAAAATTGGGAAAAGATCCAGCACATTCTCGAAAAAATAATCCTATGATATCCATAGCTCTCAAGGTAAGACACTAATTAAGACTCGAAGTCCCTTTGCTGCCTTCTGCTCCCTGTAAATGAGACTCACTGCTATCTCTGGTCATGTTTGTTAATCAATTTGTCAAACTGATTCTGCAGACGAGGCATCATGGCGCAATGGCGTTGCATCAGCAGGGCTTTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA015351