BGIOSGA016442

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Revision as of 04:29, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA016442| Description = BGIOSGA016442| Definition = Oryza sativa Indica Group BGIOSGA016442, complete gene.| tag = | tid = BGIOSGA016442-TA|...")
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Gene Name

BGIOSGA016442

Description

BGIOSGA016442

Definition

Oryza sativa Indica Group BGIOSGA016442, complete gene.

LocusTag

'

Ensembl Transcript ID

BGIOSGA016442-TA

Ensembl Protein ID

BGIOSGA016442-PA

Length

5094

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:19359287..19364380

Sequence Coding Region

19359287..19359541,19359688..19359762,19359889..19359990,19360079..19360132,19360238..19360330
,19360868..19360960,19363669..19363773,19363857..19363955,19364042..19364380

Genome Context

<gbrowseImage1> name=IndicaChromosome04:19359287..19364380 source=RiceIndica04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome04:19359287..19364380 source=RiceIndica04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGCNCTCTCTGCACTCGCAGCACTATCAGCCGTTGCCTCCTGACTATGTCTCCATCACTATCCCGCGCAGAATGATTCTCGCGAAGCTTTCTGTGCGATCACTCACGATCAGATGCAATGCGGTCGAGACGGCAGGGACGGCATTGGAGAGTGTAACGAGCTGCATCAACGGACATCGCGCGCACGGGAACTTCCGGGGTGGCTGCTGGCTGATGCAGGAACAAGCGAGATCCAAGGAGCTGGTCGCACATGAAATTGACGAGAATGTGGCGAGGGAGATCATCAACCACCGGTCGCTGCGGCACCCCAACATCATCCGCTTCAAGGAGGTGGTGGTCACGCCGACGCACCTGGCGATCGTGATGGAGTACGCTGCCGGCGGCGAGTTGTTCGACCGGATCTGCAACGCTGGGAGGTTCAGCGAGGACGAGGCCAGGTATTTCTTCCAGCAGCTCATCTGCGGCGTGAGCTACTGCCACTTCATGCAAATTTGCCACCGGGATTTGAAGCTGGAGAACACGCTGCTGGACGGCAGCCCGGCGCCCCGCCTCAAGATCTGCGACTTCGGTTACTCCAAGTCGTCGCTGCTGCACTCGAAGCCCAAGTCGACGGTCGGGACGCCGGCGTACATCGCGCCGGAGGTGCTATCCCGCCGGGAGTACGACGGCAAGACAGCCGATGTGTGGTCTTGTGGAGTGACTCTTTATGTGATGCTTGTTGGTGCTTACCCCTTTGAGGACCCTGATGACCCCAAGAATTTCAGAAAGACCATTGGGAGAATAATGTCAATTCAGTACAAAATACCCGAGTACGTCCATGTATCCCAGGACTGCAGGCAACTCCTTTCTAGAATTTTTGTTGCAAACCCTGCAAAGAGAATAACAATAAGGGAGATCAGGAACCACCCATGGTTCCTGAAGAACCTGCCAAGAGAGCTCACAGAAGCTGCACAGGCAATGTACTACAAGAAGGATAACAGTGCCCCGACCTACTCCGTCCAGTCGGTCGAGGAGATCATGAAGATTGTCGAGGAAGCGCGGACGCCGCCTCGGTCCTCCACCCCCGTGGCCGGCTTTGGCTGGCAAGAGGAGGATGAGCAGGAGGACAACAGCAAGAAGCCAGAGGAAGAACAGGAGGAAGAGGAAGATGCTGAGGATGAGTACGACAAGCAGGTGAAACAAGTCCATGCCAGTGGTGAGTTTCAGCTCAGCTGA</cdnaseq>

Protein Sequence

<aaseq>MXSLHSQHYQPLPPDYVSITIPRRMILAKLSVRSLTIRCNAVETAGTALESVTSCINGHRAHGNFRGGCWLMQEQARSKELVAHEIDENVAREIINHRSLRHPNIIRFKEVVVTPTHLAIVMEYAAGGELFDRICNAGRFSEDEARYFFQQLICGVSYCHFMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSKPKSTVGTPAYIAPEVLSRREYDGKTADVWSCGVTLYVMLVGAYPFEDPDDPKNFRKTIGRIMSIQYKIPEYVHVSQDCRQLLSRIFVANPAKRITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMKIVEEARTPPRSSTPVAGFGWQEEDEQEDNSKKPEEEQEEEEDAEDEYDKQVKQVHASGEFQLS</aaseq>

Gene Sequence

<dnaseqindica>1..255#402..476#603..704#793..846#952..1044#1582..1674#4383..4487#4571..4669#4756..5094#ATGCNCTCTCTGCACTCGCAGCACTATCAGCCGTTGCCTCCTGACTATGTCTCCATCACTATCCCGCGCAGAATGATTCTCGCGAAGCTTTCTGTGCGATCACTCACGATCAGATGCAATGCGGTCGAGACGGCAGGGACGGCATTGGAGAGTGTAACGAGCTGCATCAACGGACATCGCGCGCACGGGAACTTCCGGGGTGGCTGCTGGCTGATGCAGGAACAAGCGAGATCCAAGGAGCTGGTCGCACATGAAGTACATCCCTCGGGGCACTCAAGGCGAGCCTTCTTCGCTTCTTCTTCTTCTTCTTCTTGTCCCTTTTCGTCCGCTCTGTTTTCCTGATCGATCGATGGGTGTGGGGCGTTTTTTTGCTCATTCGGGTGGTGATCTGATCTCTGCAGATTGACGAGAATGTGGCGAGGGAGATCATCAACCACCGGTCGCTGCGGCACCCCAACATCATCCGCTTCAAGGAGGTGAGGCCGTGGCGGGGGGCAAATTGGGTGTTCGCCCCTGTTCGTCGCGTCGGTGGCGAAGAATCTGTTTGTTTTTTTTTCTTTGTGTGTGTGTGTGTGATGGAAGAATCGTGCCTTGCGATGCAGGTGGTGGTCACGCCGACGCACCTGGCGATCGTGATGGAGTACGCTGCCGGCGGCGAGTTGTTCGACCGGATCTGCAACGCTGGGAGGTTCAGCGAGGACGAGGTTCAGCGATGCTCGAATCGACTCTAATCAACTCCATTTCTTGGTGAGTTCTTGTGCTAATCCGCGTGAGAATGGTGGGCTTTTGCAGGCCAGGTATTTCTTCCAGCAGCTCATCTGCGGCGTGAGCTACTGCCACTTCATGGTAAGAACAGAAAAACGATCCCAGTAAACATTGCATTCTTTTTTTTTAAAAAAAAGGATGGGAAAGTGTTCAAATGTGAAATTATTATTCGTGATGGATTCGCAGCAAATTTGCCACCGGGATTTGAAGCTGGAGAACACGCTGCTGGACGGCAGCCCGGCGCCCCGCCTCAAGATCTGCGACTTCGGTTACTCCAAGGTAGGGAGAAGGCCTTCTTTAACCTTTTCTTGAATACAGTAATCTTTTCCCTCGAAACCTGCCTCAACACCTCTTTTCCCTGCCCGGATTTCTTCTAGAAATGGACAAGCTTTTCTTTTTTCCCTTGTCAAAAAGCACTCTATTTTTAAATGATCTATAGTCGATTTAATTACCTATAAATATATATTACACTAGTAATATTTGATCTTACCTGTTATACATACATTTTAATATATGCTACAGCTAACTATAAATAAAATTTATAGCCGGTTACTTTTCTCTTTTATCATTTATCTTCGGTTTATAGTTACCTAGTCTCAAAAGATCAAAACTTTTTCTTCACTGTTTCAATTCACTCCCCCAAGAAACGCCATTGCTTGCAAACGTTTTCTTCTACAAATGCTAAAAAAAAAAAACTCCTATGTGCTTTCTTGCCTAATTTTCTCCCCCTTTTCTTACGCGCAACTGCCTAAAAGAAGCAACATTTTCGCTTTGATCGCAACATGACACCTTTTTTGTTTCTTCTCCTCGTCGCAGTCGTCGCTGCTGCACTCGAAGCCCAAGTCGACGGTCGGGACGCCGGCGTACATCGCGCCGGAGGTGCTATCCCGCCGGGAGTACGACGGCAAGGTCAGTCACGCCCATTCGCCCATCACTTCCCCTTGTCATCTGTGGCATGGTGGTGGGGCCCACTGGCAGTGGCGGTAGCGTGGGGCCCACCTGCTCCTGGTCCTCAGCGCCGAGCACGTGCCGTCCCCTGGGAGTCCACGTATCGCGGTTCTCAAGGCAAACACGACCTTGGACCGTAGACCCGGCCTATGGGCGAGCTGGGCAGCGTCGGAAAGTGGGTCCCATGTGTCTGTGAGTGTTGGGTCTATGGGCTACTATGGGCTAGGGTCCATGGGGGGGGGACAGGTGCCTCTGGGTGGTGGATTTGGGATTTGTCCTCTAGGAGAGCGGTGGAGATTTGCTTGCCTGCGGCCGGACAGACGCCCACTGGGCTGTGGGCCCGGGATTGTTCTTAGCCCGGGCCCACACACTGCCTCGTGATTCGTGACAGTAGTAGTACTAGTACATGCTAGACAGTGTGTAGTAGTACGCGCTAAACAGGCTGTGTGAAGGGGCCCTGAGACCATATGCTGCTGACTGTCACTCTCAGTTCAGCTGAGTGTGTTTTGCTCAAAAAAAATAGAAGAAGAAGAAGAAGAAGAAGAAGCTTGAGTGTGTGTTTCTTGCTGCAGCTGAGCTGAGCTGCTACTGTAGTGCATTAGATTCCCAGCTAATGATGCTCCCTCCAGTAGTGGTAGTAGAACTCCAGTGTTTTTTGTTGAAAAATCTCTTCTGTAAAAGCAAGGGAGGGATTATTCAAAAGGACAGGTTCCTTCCTTTGTGTGTGTGTGTGATGTCGATCTAGACATTCACATTCTCTCTCGGTTTTTTTTTCGGTAATCAACTAATCACACATCACGCTTGATGGGGATGCTCGCTTCGACGAGGCGTGGCGGCTGCTTTAATAGCACGCCAGACACAAAAGAGGAGGGGGGAGAAAAGACGGGTTGATCGAATTCGAGACGGTTTTAGTGGTCAAGAGTTTGCACCCTGTAGCTTGTTACGTGCCCCCACTTGTTGCTTTATTAAAATGTGGTGGCCTGAGGTAAAGTGAGATTAGCCGGTGATGGCATGAGATTCTCCAGGGTACAGATGCGAGATATTTTGCTTCTCGCCCAATTTGGGCGGGGTTAAAAGTTCGGATTTTTTGTATGTTTGGTTTTCCAGTGTGTTTTGGCGAGTGAAGTAACGGAGTGTGATTTTGTCTTTAGTTACATGCAACGCTAAGAAAGGAATGATTTTTCATCGTTTGGGATTGAAATGGAACAGACGTGTAGGGATTAGGTGAATTGTGACAGGATCCATGAGGTAGACGCACCCCTCAGTCTGTATTTGCAGTTATGCATGTCATTCGGTTGGACAGCTTGCAATTTTTGTTGACATCTTTTTGGGTTCACCTCATACTTTATGTCCTTTTCTGAGCTTTTTTTTCCATCATGGTTCTAGTGCTACATATTAGCTAATTGACGTTATCACAATGGGCCCTCGGACCCAATCCTTTTCAGGTAGACATGTTAGACTGAACTTCTCTTTGGCCTTTTCTGTGGTTATTAATTTTCTCTCTCTCCTTGGTGTCAGTTACTGCCGTCATATCTTATGAACGATTTTCTTCAGGACAGTGATTGCATTTTGTTCCTTCCCTATATAATACATCTACTCAGGCTGCTTAGATTTTTCACGCTGCAAAATTGGTTGCTTTTGATTGACAAAGTGGACACTGCCATAGATAATTTGTAGATGGAATATCAAGAAACATTTTATCATTTGCATCTAGATGTTCCTTTTTTACAACCATAATGTGCCCTTGATTTCAACAACCTATAATGCTTATTTCCGAGTTATAGAGTTATGTATTTTTCAGCTGATTTGTTCCCGTCATCTTTAGACTGCCCTCAACCACCTGTTTTTTATTTGAATTAATGCTGGAATAATCTATTGCATAAAGAAAAAAAACCACTGTTGTACCGCTTTCCAAAAGATTACTGGATGCGTATGTCCTATAACAGTCATGGTTGTTAGCCTACTTAGCCATTAGGTGAGAAAGCACAAAGTGCCCCACAACAGGTAAATGTCTGTGGGGGGAATATGTAATTACCGAAGGACATGGATCCTCTGAGATCATCTTTTCTATGTTCTCATGATAACGCCACCACCCTAATAACGAATGTCAATACTTATGCTTACCATAGGTGTGTTCTGTCATTACCTGTTTTTATCTTTGCTTTAGTACATAAGCGTAGCACTGATGCTTGTCTGCCTTTTGAATTTAGGTTCATGGAAGTGCACGTCATCTTTCCTATCATTCAGTTTATTTTGTACAGAAGTTAGCATCCATTGTGAACATAGCTGAAATTTGCGTACTTCGGAGAGTTTTGATATTTCCACGCTTCTATTTGGAACTTTGAGCGTACTAAACATAAGTGACAGCATGCTGTGCAGAAAATAAAAGGAGCCAATCAAATAGATGTGCTAAATAGTGTAATAGAGCCTTTGATTTTTGTTTCTTGGACCATTTTAAATTACAGAGATTATTCTGAAATGTTTTGATAATCGAAACAAGCACGATTAATGTTCTACAGGCTGTTCTGCCTTAATATTCTACTAGAAAGAAGTGTACTTTCATACATCCTGTTCTTGCTTGTATTTATCCTTTCATTTGTTTCTATCTTATCTCCTGAATTCATTTACTTGTCTCCTAACATTTTTGGATTGGATGGTTGATGCTTCAGACAGCCGATGTGTGGTCTTGTGGAGTGACTCTTTATGTGATGCTTGTTGGTGCTTACCCCTTTGAGGACCCTGATGACCCCAAGAATTTCAGAAAGACCATTGGGGTAACAATTTAAGAACTTTTCAGCTAAGCATTATCAGATCACAACTTCTAGTTTCTTATGCTTTGTGCATTTTTTGTTCTCAGAGAATAATGTCAATTCAGTACAAAATACCCGAGTACGTCCATGTATCCCAGGACTGCAGGCAACTCCTTTCTAGAATTTTTGTTGCAAACCCTGCAAAGGTACTACTCTATTTAAACTCAGATCAACTTACTAGACCTATTCATGATTTTTTTTTAAAAAAAAATCATTCCCAAACTTCATACAGAGAATAACAATAAGGGAGATCAGGAACCACCCATGGTTCCTGAAGAACCTGCCAAGAGAGCTCACAGAAGCTGCACAGGCAATGTACTACAAGAAGGATAACAGTGCCCCGACCTACTCCGTCCAGTCGGTCGAGGAGATCATGAAGATTGTCGAGGAAGCGCGGACGCCGCCTCGGTCCTCCACCCCCGTGGCCGGCTTTGGCTGGCAAGAGGAGGATGAGCAGGAGGACAACAGCAAGAAGCCAGAGGAAGAACAGGAGGAAGAGGAAGATGCTGAGGATGAGTACGACAAGCAGGTGAAACAAGTCCATGCCAGTGGTGAGTTTCAGCTCAGCTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA016442

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