Os07g0646500

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Revision as of 08:49, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0646500| Description = Zinc finger, SWIM-type domain containing protein| Version = NM_001066998.1 GI:115473728 GeneID:4344103| Length = 267...")
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Gene Name

Os07g0646500

Description

Zinc finger, SWIM-type domain containing protein

Version

NM_001066998.1 GI:115473728 GeneID:4344103

Length

2671 bp

Definition

Oryza sativa Japonica Group Os07g0646500, complete gene.

Source

Oryza sativa Japonica Group 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:27652124..27654794

Sequence Coding Region

27652124..27652210,27652270..27652362,27652521..27654794

Expression

GEO Profiles:Os07g0646500

Genome Context

<gbrowseImage1> name=NC_008400:27652124..27654794 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:27652124..27654794 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgaagcgcaaggcaccgtccggcccctcctcctcgccgtctcccgccgccgctggcgccgacgcgtccccgcccgtcgaccccgtttcgtattctagctcgcagggtggatccgccggcgggaggaatcgcaagggcgcagcggcggcggccaagcggaagcctaggaagccgcaggttcacgagaaaaattacgcgcatgtgtactatggatgtagaaatgttttatatgatgggaatgatttctactatggacatagatatacagaagaatttcgtaaggtggaggcacatgatttgtatggatgtccacacttgattgccgagctaccaccacaaccacggttaatgtcattgctggatttacagctctggattatcaagttgtttagactccatccagaaacacaagacctctcaattaagggcttcttcgaagaagaagacagttggcagtacttaggttcagcgggctggaagacctatgattttctatctgataaaagttggcagtcctttgtcaagaaagtaaagggtagaaaggggatggaatttttcaagttgtatgtggactcctctgaaatcaagcactacgacagtttgctaaaagcaacaaatgatgattattgtcagtcggcaactgtcttgttgcccgagcaagatgatctgacatggtattttccttgggatcacatttcccgacgcctcacggaagacctggcaatgacaactacacagattgtagctcatcttgctcacaactatgacaggcaccttagctatgctggggcatggagagcaaagcagaaggctttggagatacgatttggtacattttatgcttcacacaactatgtcccgaggttactcaaggaaagattttacataaataaccctttcagttttgtggacatcaaggatacagaggttgcaggctgtaaagatttccgagtcctccaccgtatattctgggcatttgcacagtgcacgcaggcctttctgcactgtcgtcctgtgatttgtgttaagggaatgccgctatgtgggaaatatgaaggggttctgttaactgctctagcatttgatgctaatggttaccccattccagtagcatttgctgtcatcgagggtgagagcaaagaaagctggctatggtttcttaggaatgtgaaacatgctgttgtgaaggagcgatctcatatctgcatcatacatgattgcaaaagggcattgttcaatgctatagaagatctaaggaataatccacaagaagcacatccatggaaggatgtacaaagccgctggtgcatccaacaccttgctgaaaacctgttcgcccattttgctgacaaaaagctgatgatgctgttcaagaagctttgtcagcagaaccgacaaaacaagtttgttaagatctggaaggaactagatgagttgacgctcaaatttacggtagataaagaaggtggtgctggtagggaaatgatgcaggagttggttgagccttatgagaataatcgactcccggaggaggatgaggaggagagtaatcggccaagtggcaacaaaagccaggtagccatgttttctgactggatcagtcaaaaaccaatggagaaatggtcattgttgcatgatacaaatggagctagatatggcattatggagactgatataaacaaaagttaccatgtattgaagctgaaggggatagaatgccttccactcactggactagtggaggtggcatttgaacgtgtgacagagtatttcaataacagaagtgctgctgcaaacaaagcaacgggcaacccttccatgggcttccctgaatgtgtccaggatgagatgaatgcaaaagtgcaaaaagcacagacgtatcacgtgacccgcatgaacactgcggatacaaatgttttctccaacgaagcgcatcaaaggtttaaggttcagtcaagacagaagggtgtgattgttcatctgatatcgaaacgtatccataagaatcacaaaaggaacatagcgtgtcaaagcgaaatcagaagaatcgctcgatgttcatgcaacaaagcaaggctgcttcacaagccctgctctcatgtcattgccgtctgctgtcaggttggagtcagcattgcctcatacatgtcccccttctacagcctgtcctatctagtcaaaacttggagtggaaaatcagatgcatccaaccttgttgaccggaattttgctcggaatgtcctaaactacaaatttctgtgcccaggggagacgcaaacatggatccctgataaacgtttggagcgtggccttcctgcctttttaacatcagacaggatacatgatgaggagagcatggatgagggagatcaaaactgcacaactcaggttataacaactgaaaacagtcagggaaccaacaagttctcaggagaaactagtgatgcttga</cdnaseq>

Protein Sequence

<aaseq>MAKRKAPSGPSSSPSPAAAGADASPPVDPVSYSSSQGGSAGGRN RKGAAAAAKRKPRKPQVHEKNYAHVYYGCRNVLYDGNDFYYGHRYTEEFRKVEAHDLY GCPHLIAELPPQPRLMSLLDLQLWIIKLFRLHPETQDLSIKGFFEEEDSWQYLGSAGW KTYDFLSDKSWQSFVKKVKGRKGMEFFKLYVDSSEIKHYDSLLKATNDDYCQSATVLL PEQDDLTWYFPWDHISRRLTEDLAMTTTQIVAHLAHNYDRHLSYAGAWRAKQKALEIR FGTFYASHNYVPRLLKERFYINNPFSFVDIKDTEVAGCKDFRVLHRIFWAFAQCTQAF LHCRPVICVKGMPLCGKYEGVLLTALAFDANGYPIPVAFAVIEGESKESWLWFLRNVK HAVVKERSHICIIHDCKRALFNAIEDLRNNPQEAHPWKDVQSRWCIQHLAENLFAHFA DKKLMMLFKKLCQQNRQNKFVKIWKELDELTLKFTVDKEGGAGREMMQELVEPYENNR LPEEDEEESNRPSGNKSQVAMFSDWISQKPMEKWSLLHDTNGARYGIMETDINKSYHV LKLKGIECLPLTGLVEVAFERVTEYFNNRSAAANKATGNPSMGFPECVQDEMNAKVQK AQTYHVTRMNTADTNVFSNEAHQRFKVQSRQKGVIVHLISKRIHKNHKRNIACQSEIR RIARCSCNKARLLHKPCSHVIAVCCQVGVSIASYMSPFYSLSYLVKTWSGKSDASNLV DRNFARNVLNYKFLCPGETQTWIPDKRLERGLPAFLTSDRIHDEESMDEGDQNCTTQV ITTENSQGTNKFSGETSDA</aaseq>

Gene Sequence

<dnaseqindica>1..87#147..239#398..2671#atggcgaagcgcaaggcaccgtccggcccctcctcctcgccgtctcccgccgccgctggcgccgacgcgtccccgcccgtcgaccccgtcagttcacctctccctcgaatctcacgctagttttgatttctcttccttttgttgaggtttcgtattctagctcgcagggtggatccgccggcgggaggaatcgcaagggcgcagcggcggcggccaagcggaagcctaggaagccgcaggtttgcgtcctcccaaatcccaatcgcagcaaatccttgcatcctgctctcttttttgattcgtttgaggctgtaattttgccactgaatgtgtggttactgttctgcccccaaatacaacattggcctgatgcaataattctgtcacttttgcgtaggttcacgagaaaaattacgcgcatgtgtactatggatgtagaaatgttttatatgatgggaatgatttctactatggacatagatatacagaagaatttcgtaaggtggaggcacatgatttgtatggatgtccacacttgattgccgagctaccaccacaaccacggttaatgtcattgctggatttacagctctggattatcaagttgtttagactccatccagaaacacaagacctctcaattaagggcttcttcgaagaagaagacagttggcagtacttaggttcagcgggctggaagacctatgattttctatctgataaaagttggcagtcctttgtcaagaaagtaaagggtagaaaggggatggaatttttcaagttgtatgtggactcctctgaaatcaagcactacgacagtttgctaaaagcaacaaatgatgattattgtcagtcggcaactgtcttgttgcccgagcaagatgatctgacatggtattttccttgggatcacatttcccgacgcctcacggaagacctggcaatgacaactacacagattgtagctcatcttgctcacaactatgacaggcaccttagctatgctggggcatggagagcaaagcagaaggctttggagatacgatttggtacattttatgcttcacacaactatgtcccgaggttactcaaggaaagattttacataaataaccctttcagttttgtggacatcaaggatacagaggttgcaggctgtaaagatttccgagtcctccaccgtatattctgggcatttgcacagtgcacgcaggcctttctgcactgtcgtcctgtgatttgtgttaagggaatgccgctatgtgggaaatatgaaggggttctgttaactgctctagcatttgatgctaatggttaccccattccagtagcatttgctgtcatcgagggtgagagcaaagaaagctggctatggtttcttaggaatgtgaaacatgctgttgtgaaggagcgatctcatatctgcatcatacatgattgcaaaagggcattgttcaatgctatagaagatctaaggaataatccacaagaagcacatccatggaaggatgtacaaagccgctggtgcatccaacaccttgctgaaaacctgttcgcccattttgctgacaaaaagctgatgatgctgttcaagaagctttgtcagcagaaccgacaaaacaagtttgttaagatctggaaggaactagatgagttgacgctcaaatttacggtagataaagaaggtggtgctggtagggaaatgatgcaggagttggttgagccttatgagaataatcgactcccggaggaggatgaggaggagagtaatcggccaagtggcaacaaaagccaggtagccatgttttctgactggatcagtcaaaaaccaatggagaaatggtcattgttgcatgatacaaatggagctagatatggcattatggagactgatataaacaaaagttaccatgtattgaagctgaaggggatagaatgccttccactcactggactagtggaggtggcatttgaacgtgtgacagagtatttcaataacagaagtgctgctgcaaacaaagcaacgggcaacccttccatgggcttccctgaatgtgtccaggatgagatgaatgcaaaagtgcaaaaagcacagacgtatcacgtgacccgcatgaacactgcggatacaaatgttttctccaacgaagcgcatcaaaggtttaaggttcagtcaagacagaagggtgtgattgttcatctgatatcgaaacgtatccataagaatcacaaaaggaacatagcgtgtcaaagcgaaatcagaagaatcgctcgatgttcatgcaacaaagcaaggctgcttcacaagccctgctctcatgtcattgccgtctgctgtcaggttggagtcagcattgcctcatacatgtcccccttctacagcctgtcctatctagtcaaaacttggagtggaaaatcagatgcatccaaccttgttgaccggaattttgctcggaatgtcctaaactacaaatttctgtgcccaggggagacgcaaacatggatccctgataaacgtttggagcgtggccttcctgcctttttaacatcagacaggatacatgatgaggagagcatggatgagggagatcaaaactgcacaactcaggttataacaactgaaaacagtcagggaaccaacaagttctcaggagaaactagtgatgcttga</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0646500, RefSeq:Os07g0646500

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