Os07g0660200

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Revision as of 08:51, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0660200| Description = Similar to Chromodomain-helicase-DNA-binding protein, CHD-1-related| Version = NM_001067065.1 GI:115473862 GeneID:434...")
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Gene Name

Os07g0660200

Description

Similar to Chromodomain-helicase-DNA-binding protein, CHD-1-related

Version

NM_001067065.1 GI:115473862 GeneID:4344175

Length

4763 bp

Definition

Oryza sativa Japonica Group Os07g0660200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:28487375..28492137

Sequence Coding Region

28487375..28487725,28488666..28488847,28488928..28489105,28489190..28489342,28489730..28489969
,28490106..28490185,28490284..28490467,28490888..28490977,28491062..28491172
,28491273..28491515,28492057..28492137

Expression

GEO Profiles:Os07g0660200

Genome Context

<gbrowseImage1> name=NC_008400:28487375..28492137 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:28487375..28492137 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>agtagtgggaaattagtgttattggacaagctgttggtaagactgcgggagactaatcatcgtgtgcttatcttctctcagatggttaggatgttggacatccttgctgagtatctatccctccgaggattccagtttcagaggcttgatggcagtacgagagcagatcttcgtcaccaggccatggagcattttaatgctcctggaagtgatgacttctgttttcttctgtctacacgtgctggtgggcttggtattaatcttgcaacagcagataccgtgatcatttttgattcagactggaatccgcaaaatgatttacaggcaatgagtagggcacacaggattgggcaacaagaaactgttaacatatatcgtttcgtgacatgcaaaagtgttgaagaggatatattggaacgtgcaaagaaaaaaatggttcttgatcacctagtgattcagaagctaaatgctgagggcaggctcgagaagaaagaatcaaaaaaaggtggttccatgtttgacaagaatgaactttcagcgatattgagatttggagcagaagagttattcaaagaagataagactgatgaagagaccaagaagaagcttgaaagcatggacattgatgaaattctcgagagagctgagaaagttgaaacaaagggtggtgaaggggaggaaggaaatgaacttcttagtgcattcaaggttgccaacttttctagtggtgaggatgatgccacattctggagcagattaattcaaccagatgcttcagatatggttgaggagactttagcacctcgtgctgcaagaaataagaagagctatgttgaagatcaccaacttgataagaatagcaacaggaaaaggcgaggaatcgatgcacaagaaaagccaaggaggcgttctagcagaacaatggacacagctgtgtcattaccactcatagatggttcagcacatcaagtacgagaatggtcatttggaaatttgtcaaagaaagatgctacccgatttgttcgagcggttaaaaaatttggaaacccaagccaaattgggttaatcgtggatgatgttggtggtgcaatagcaaagtcttcggttgatcaacagcttgagctgtttactctactcattgagggttgtcaagatgctgttaaaaataatatggatgccaagggcacagtgttggatttttttggtgtagcagttaaggcgcatgagttgatagcccgtgtggaagagctacagttcctggcaaggcgcattgcacgttacaaagatccagttagacaataccggatccaggcaccttacaaaaagccacagtggtcagcaagctgtggttggactgaaactgatgatgcaagattgatggttggaattcattggtatggctatggaaattgggagaagatacgattagatccaaaacttagcttgacagcgaaaattgcaccagcaacccttggtgaacgagagacgtttttaccgcgtgcaccgaacttggataatcgtgctagtgctcttctacaaaaggaatttgccaatcttcgtggtaagagctcgaaagccaagggaggtcctcgtcaagcaattgataatgaaagcaatggtggagctcgttcattaagaggccggcaaaaagacacaaaaataaaagaagataataattcaattaaagatgactttaagaaacgcaaggtggtggaacctgaagcaagggaagaaggtgaaatttcagaatctgaagcagagactaaatatcgtcaggacaaggaagaaaagtggctggaatggtgttctgaagttttggatgacgagcaggagatattaaagcggctggataggcttcagaatactagtgtaaatctgccaaaggaaaaggtt</cdnaseq>

Protein Sequence

<aaseq>SSGKLVLLDKLLVRLRETNHRVLIFSQMVRMLDILAEYLSLRGF QFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWN PQNDLQAMSRAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVLDHLVIQKLNAEGR LEKKESKKGGSMFDKNELSAILRFGAEELFKEDKTDEETKKKLESMDIDEILERAEKV ETKGGEGEEGNELLSAFKVANFSSGEDDATFWSRLIQPDASDMVEETLAPRAARNKKS YVEDHQLDKNSNRKRRGIDAQEKPRRRSSRTMDTAVSLPLIDGSAHQVREWSFGNLSK KDATRFVRAVKKFGNPSQIGLIVDDVGGAIAKSSVDQQLELFTLLIEGCQDAVKNNMD AKGTVLDFFGVAVKAHELIARVEELQFLARRIARYKDPVRQYRIQAPYKKPQWSASCG WTETDDARLMVGIHWYGYGNWEKIRLDPKLSLTAKIAPATLGERETFLPRAPNLDNRA SALLQKEFANLRGKSSKAKGGPRQAIDNESNGGARSLRGRQKDTKIKEDNNSIKDDFK KRKVVEPEAREEGEISESEAETKYRQDKEEKWLEWCSEVLDDEQEILKRLDRLQNTSV NLPKEKV</aaseq>

Gene Sequence

<dnaseqindica>4413..4763#3291..3472#3033..3210#2796..2948#2169..2408#1953..2032#1671..1854#1161..1250#966..1076#623..865#1..81#agtagtgggaaattagtgttattggacaagctgttggtaagactgcgggagactaatcatcgtgtgcttatcttctctcaggtttgtatgtttggtttacttgccatttgatgcccattgtgttgcagtctatattagtcgaactaatagtatccaatacattgtctaaacttattttctacaatccattagcaatatgttgcatacgtgcagaaatttgcttcaatttgagaaattagtatggtgagtcaagttaacaacgtggttagttggttgcatagttggttagtgttttgtttgcagaatgaaacttctcttcagggatgataggaagagctggctcagtgtatttgttttgatactttgcagtgttttttctgttcttttatctgacagaacaagcttattcaattggttgcttttgttagttggtaaatgtatttatattttttacaacacaattatggtttccctgcattttgaaagctattgtgttactagagccacatttgtattttacaccaacatcaatatatcggacaacgaatatattatatgtcgcttgaaagcatttgcaccttagataacttatataagtgctttctgaatcaaattgttgcagatggttaggatgttggacatccttgctgagtatctatccctccgaggattccagtttcagaggcttgatggcagtacgagagcagatcttcgtcaccaggccatggagcattttaatgctcctggaagtgatgacttctgttttcttctgtctacacgtgctggtgggcttggtattaatcttgcaacagcagataccgtgatcatttttgattcagactggaatccgcaaaatgatttacaggttcccctctctctctctctctctcatatatgggttttcaatttttgtcttgaaagagtttctcatatttcgggtttttgaatgtgtgatgtcatgctaggcaatgagtagggcacacaggattgggcaacaagaaactgttaacatatatcgtttcgtgacatgcaaaagtgttgaagaggatatattggaacgtgcaaagaaaaaaatggtgatgagcctgatttgtttcatatattgttttaataaatataaacgaataacctctgacttgttctttttctatatatgtcaggttcttgatcacctagtgattcagaagctaaatgctgagggcaggctcgagaagaaagaatcaaaaaaaggtggttccatgtttgacaaggtaagtttctgcaccagttatttagtttacttaggtatttgggttgatttggatgtcatattggtttggtacaacaatattacttaggtagttttaacaatcttttgtatataagatagatttgtatatttgaaatctatctattgtataattgtattacaaaagattgttaaaactaccagtaacttatcaactaagcgattgttagtgatacaggctgtaagtctagtgtggtatatatatgctcatgtgactagaccagccttctttcaagatacccaagctataattctctctacaacacaagagcatttactgataattaaaattctgagagaaatgcattaaatagaatctggcttgtcacctcacttgtattttctgttttgctcttctgatgtgagctatacattttgccagaatgaactttcagcgatattgagatttggagcagaagagttattcaaagaagataagactgatgaagagaccaagaagaagcttgaaagcatggacattgatgaaattctcgagagagctgagaaagttgaaacaaagggtggtgaaggggaggaaggaaatgaacttcttagtgcattcaaggcatgttctgtgcactaccatatgacctgtgattcagacatcatgcttaaattctatacttctgttcatatttctttttttattttttgtgtggataggttgccaacttttctagtggtgaggatgatgccacattctggagcagattaattcaaccagatgcttcagatatggttgaggtatttatttggactaattttgtgttagtgcccttttcacagttgaaaaccacgtccagctgttgtctgacagtaacttaatcatatagttccctgccaaaaaaattcagagagtaagtatttatatgttctgcaggagactttagcacctcgtgctgcaagaaataagaagagctatgttgaagatcaccaacttgataagaatagcaacaggaaaaggcgaggaatcgatgcacaagaaaagccaaggaggcgttctagcagaacaatggacacagctgtgtcattaccactcatagatggttcagcacatcaagtacgagaatggtcatttggaaatttgtcaaagaaagatgctacccgatttgttcgagcggtaaatctgcacccgttctcaatattcttttcttttatgtggcgattttatatttacaatatccagagtcatgctattatgtttgttttttcttccccttaatgaaatgaaatgcagctctcctgcgttttcgagaaaaaaaaaactgttatgttattatctcttctgctttgggtttgtgagagattgcaaaacttctgcttagacaagttattgaaagttagcattactaagatttgcaagttatcaagtagtagtagtgtaagtttcttctcttgtgatttctgggaactttacgagacacccaactttttccacaaaatgattaagttgtagattgaatattacttcccagcttcatcttactccgataagtaaacattttaggttaaaaaatttggaaacccaagccaaattgggttaatcgtggatgatgttggtggtgcaatagcaaagtcttcggttgatcaacagcttgagctgtttactctactcattgagggttgtcaagatgctgttaaaaataatatggatgccaaggtataatcgttgtactttccctctacctggatacctttgccttctcatcgcctttaatctcagttatttgtactttaaatgcagggcacagtgttggatttttttggtgtagcagttaaggcgcatgagttgatagcccgtgtggaagagctacagttcctggcaaggcgcattgcacgttacaaagatccagttagacaataccggatccaggcaccttacaaaaagccacagtggtcagcaagctgtggttggactgaaagtaattgctgtcaaaccttttgctttgttgaaaatgttactaaaaaaatatatactcatataattcttgtatctgtttagctgatgatgcaagattgatggttggaattcattggtatggctatggaaattgggagaagatacgattagatccaaaacttagcttgacagcgaaaattgcaccagcaacccttggtgaacgagagacgtttttaccgcgtgcaccgaacttggataatcgtgctagtgctcttctacaaaaggtaatctgcatgtcgcaccccctccccctacccctcccccaccctacttgctctatcttaagcttacacttacaactgtacctagagtttgcttattgtgtactggaatgactcatacagattacagcataaaatgcttgttaagaattgaatttctttagacactcagcatgagtgcgggttcacaactttttagagtaattttcacaaagacccatatcatggctaactgtgacaaaaaacccacagtttttagatttctttggacataaccacaggagaccaactttttaacagaaaacatcagtttttagtattttatacagaacatcttaccaaaagctcggcagctttgtgctacggtgctgtgctataaacagctcagagcctcagaggaagtttgttttctccaacaacctagacgatttgctcggtcaattgtgctcatgcaatttgatttgtagcaagtagatgtggactcttgtcactctatgcaattacttccttgaaatgaacaaatgcaattgcttaacatgacattgtgtagaaaaaaatgtcatgttcctgaaaatataaatatacacaccagtatgcatgctccatgcatcagtatgatttgttaatgcagccaatgtgatccgcaaaagaaagctagtagccactgtaatgcagaaattgtcaggggctggccattccagttggctgctcatctccttgtttggggccgtgctttgcaaaaaaacctggtgttttgtttttgttaaattgtttgtctccttgtggttctgtgcaaaaaataaaaatctaaacctggtcgggtggttatgtttttggtaagtacatggaattttatgatatttattcaatattttacttaatcagaagtagtagatcccacatgtgttcagcttttgattgacacgtaattttacttatccaggaatttgccaatcttcgtggtaagagctcgaaagccaagggaggtcctcgtcaagcaattgataatgaaagcaatggtggagctcgttcattaagaggccggcaaaaagacacaaaaataaaagaagataataattcaattaaagatgactttaagaaacgcaaggtggtggaacctgaagcaagggaagaaggtgaaatttcagaatctgaagcagagactaaatatcgtcaggacaaggaagaaaagtggctggaatggtgttctgaagttttggatgacgagcaggagatattaaagcggctggataggcttcagaatactagtgtaaatctgccaaaggaaaaggtt</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0660200, RefSeq:Os07g0660200