BGIOSGA020225

From RiceWiki
Revision as of 16:29, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA020225

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA020225, complete gene.

LocusTag

OS05G0525600

Ensembl Transcript ID

BGIOSGA020225-TA

Ensembl Protein ID

BGIOSGA020225-PA

Length

4317

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:27530211..27534527

Sequence Coding Region

27530211..27530298,27530381..27531155,27531293..27531576,27531766..27531904,27531989..27532060
,27532143..27532214,27532392..27532472,27532560..27532720,27532828..27533090
,27533328..27533454,27533641..27533709,27533821..27534013,27534113..27534527

Genome Context

<gbrowseImage1> name=IndicaChromosome05:27530211..27534527 source=RiceIndica05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome05:27530211..27534527 source=RiceIndica05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGGCTCGGTGGTGGCTGCTGCTGCTGCTCGGCCTCGCCGTCGCCGGCGTCGTTCGCGGCCAGGGCGGCGCGCCTGACACGTCCGGCTTCATCAGCATAGACTGCGGCTTGCCGGAGAAGACCAGCTACGTGGACGACGCCACGAAGCTGAAGTTCACCTCCGACGACGCCTTCACCGACGCCGGCACAATCCACAACGTCTCGTCGGAGTTCGCCACGCCGAAGACGACCACGGACAGGAGCCTGTACAACGTGCGCAGCTTCCCCGCCGGCGCGCGCAACTGCTACACGGTCCCGTCCGTCGTGCCGGGGTCCAAGTACCTGGTCCGTGCCAAGTTCTTGTACGGCAACTACGACGGCCTCAACAAGCCGCCGGTGTTCGACCTCCACCTCGGGGTCAACTTCTGGCAGACGGTGACCGTGCCATCCGCCGACTGGCTGGGGAACGCCGAGGTCATCGCCGTCGTGCCGGATGATTTCTTGCAGGTCTGCCTTGTGAACACCGGCGCCGGGACGCCGTTCATCTCCGGCCTGGACCTGAGGCCCCTGCCGAGCTCGCTCTACGCGCCCGCCAACGCGACGCAGGGGTTGGTCCTGCTCGACCGGAGGAACTTCGGCGCGAGCGGGAGCACCGTGATCAGGTACCCCGACGACACGTACGACCGCGTGTGGTGGCCGTGGAGCAACCCGCCGGCGGAGTGGTCGGACATCTCCACGGCGGACAAGGTCCAGAACACGATCGCCCCCGTGTTCGACGTGCCGTCCGTCGTGATGCAGACGGCCATCACGACGCGCAACTCCTCCATTCCCATCCAGTTCTCCTGGGACACCAAACCCAATCACGTCTACCCTGATCCCGGGTCGATTTTTACCTTGTATGTCACCGAGCTGGAGCTCCTGGCCGGCAATGCCGTTCGCCAGTTCAACGTCACCATCAATGGCGTGATTTGGACCAAAGCCCCATACAAGCCGGTTTATCTGTCCACCGACGCCATGTACAACGGAGATCGACCCTACCGGGGCATCACCCGGTACAACTTCTCTTTGAACGCCGCGGGAAGCTCCACGCTGCCGCCGATACTCAACGCCGCGGAGGCTTTCTCCGTCATCTCCACAGCCGACCTTGCAACAGACGCTCAGGATGTTTCTGCCATCACTGCAATCAAGGCCAAGTATCAGGTGAACAAGAATTGGACAGGTGACCCATGCGCTCCAAAGACACTGGCTTGGGATGGGTTAACCTGCAGCTATGCCATTTCAACCCCTCCAAGAATCACAGGAGTAAATATGTCGTATGCCGGTTTAAGTGGCGATATATCATCTTATTTCGCCAATCTAAAAGAAATCAAGAAGTTGGACTTGTCACACAATAACTTGACAGGATCAATTCCTAATGTCATTTCACAGCTACAATTTCTCGCGGTTCTAGATTTGACAGGAAACCAGCTTAATGGATCAATTCCTTCTAGTCTTCTGAAAAGAAGTCAAGATGGCTCCTTGACCCTAAGGTACGGCAATAATCCAAACCTTTGCAGTAACAGCAGTTCATGCCAGCTCCCACAAAAGAAGAGCAACTCTATGCTTGCCGTCTATGTTGCTGTTCCAGTAGTGGTGATAGGAGCAGTTGCAGTGTTCCTGATTCTCTTCATCAGGAAGAAGAAGAACAAATCAAAGGGTGCTGTGAAGCCACAGATTTTGGGGAATGGCGTGCAGTCACACAGTCAGAATGGCAGTGGAGGGAGCCTGCTGGAACTGCACAACCGTCAGTTCACGTACAAGGACTTGGCAGTCATAACGAACAACTTCCAGCGAGTCCTTGGCAAAGGAGGGTTTGGCCCCGTCTACGACGGCTTCTTGAAGGATGGTACTCATGTGGCAGTTAAACTACGGGATGAGTCTTCCAGCCAAGGATATAGTGAGTTCCTGACAGAGGCTCAGACTTTAACGAAAATTCATCACAAGAATCTTGTTGCATTAATCGGTTACTGCAAAGATGAGATACATTTGGCACTTGTGTACGAGCACATGTCAGAAGGAACTCTGGAAGATAAGCTTAGAGGCAAAGATCACAAAGGTAGATCTTTAACATGGAGGGAAAGGCTCCGTATCGTATTAGAATCTGCCCAAGGACTAGAGTATCTACACAAGGCATGCAGCCCACGCTTCGTGCATAGGGATGTGAAGTCATCGAACATCTTGCTGAATGCAAATCTTGAGGCCAAGGTTGCCGATTTTGGCCTGACAACGGCTTTTAAATGCGACGGTGACACACATGTATCCACAGTCAGGGTGGTTGGCACATATGGCTACCTTGCACCCGAGTATGCCACAGCCCTACAAGTTTCGGAGAAGATTGACGTATACAGCTTCGGTGTGGTGTTGCTAGAGGTGATCACAGGACAGCCGCCCATTATAAAGCTCCCGGAACCTACTACTATCATCCAATGGACCCGGCAACGCCTAGCGCGAGGCAACATCGAGGGTGTGGTGGATGTAAACATGCCAGACGACCGCTACGACATCAACTGTATCTGGAAGGTAGCAGATGTGGCTCTGAAATGCACTGCACATGCTCCTGGGCAGCGACCCACAATGACTGACGTGGTGACACAGCTAAAAGAGTGTCTAGAGCTTGAGGAAACCAGCTTTAAAGGCGACACGAGTAGCAGTTATATGTCAGGGAGCAGCATAGACCCAAACTCGAGTTATAACACATATACCACTGAGATGAGCTAG</cdnaseq>

Protein Sequence

<aaseq>MAARWWLLLLLGLAVAGVVRGQGGAPDTSGFISIDCGLPEKTSYVDDATKLKFTSDDAFTDAGTIHNVSSEFATPKTTTDRSLYNVRSFPAGARNCYTVPSVVPGSKYLVRAKFLYGNYDGLNKPPVFDLHLGVNFWQTVTVPSADWLGNAEVIAVVPDDFLQVCLVNTGAGTPFISGLDLRPLPSSLYAPANATQGLVLLDRRNFGASGSTVIRYPDDTYDRVWWPWSNPPAEWSDISTADKVQNTIAPVFDVPSVVMQTAITTRNSSIPIQFSWDTKPNHVYPDPGSIFTLYVTELELLAGNAVRQFNVTINGVIWTKAPYKPVYLSTDAMYNGDRPYRGITRYNFSLNAAGSSTLPPILNAAEAFSVISTADLATDAQDVSAITAIKAKYQVNKNWTGDPCAPKTLAWDGLTCSYAISTPPRITGVNMSYAGLSGDISSYFANLKEIKKLDLSHNNLTGSIPNVISQLQFLAVLDLTGNQLNGSIPSSLLKRSQDGSLTLRYGNNPNLCSNSSSCQLPQKKSNSMLAVYVAVPVVVIGAVAVFLILFIRKKKNKSKGAVKPQILGNGVQSHSQNGSGGSLLELHNRQFTYKDLAVITNNFQRVLGKGGFGPVYDGFLKDGTHVAVKLRDESSSQGYSEFLTEAQTLTKIHHKNLVALIGYCKDEIHLALVYEHMSEGTLEDKLRGKDHKGRSLTWRERLRIVLESAQGLEYLHKACSPRFVHRDVKSSNILLNANLEAKVADFGLTTAFKCDGDTHVSTVRVVGTYGYLAPEYATALQVSEKIDVYSFGVVLLEVITGQPPIIKLPEPTTIIQWTRQRLARGNIEGVVDVNMPDDRYDINCIWKVADVALKCTAHAPGQRPTMTDVVTQLKECLELEETSFKGDTSSSYMSGSSIDPNSSYNTYTTEMS</aaseq>

Gene Sequence

<dnaseqindica>1..88#171..945#1083..1366#1556..1694#1779..1850#1933..2004#2182..2262#2350..2510#2618..2880#3118..3244#3431..3499#3611..3803#3903..4317#ATGGCGGCTCGGTGGTGGCTGCTGCTGCTGCTCGGCCTCGCCGTCGCCGGCGTCGTTCGCGGCCAGGGCGGCGCGCCTGACACGTCCGGTGAGCTTTAAACTTCGATCGCCAACTCGCCGGCATTTTGGACTCGTGTACATGCTGTTCATGCATCGGGAGTACCGCGCAGGCTTCATCAGCATAGACTGCGGCTTGCCGGAGAAGACCAGCTACGTGGACGACGCCACGAAGCTGAAGTTCACCTCCGACGACGCCTTCACCGACGCCGGCACAATCCACAACGTCTCGTCGGAGTTCGCCACGCCGAAGACGACCACGGACAGGAGCCTGTACAACGTGCGCAGCTTCCCCGCCGGCGCGCGCAACTGCTACACGGTCCCGTCCGTCGTGCCGGGGTCCAAGTACCTGGTCCGTGCCAAGTTCTTGTACGGCAACTACGACGGCCTCAACAAGCCGCCGGTGTTCGACCTCCACCTCGGGGTCAACTTCTGGCAGACGGTGACCGTGCCATCCGCCGACTGGCTGGGGAACGCCGAGGTCATCGCCGTCGTGCCGGATGATTTCTTGCAGGTCTGCCTTGTGAACACCGGCGCCGGGACGCCGTTCATCTCCGGCCTGGACCTGAGGCCCCTGCCGAGCTCGCTCTACGCGCCCGCCAACGCGACGCAGGGGTTGGTCCTGCTCGACCGGAGGAACTTCGGCGCGAGCGGGAGCACCGTGATCAGGTACCCCGACGACACGTACGACCGCGTGTGGTGGCCGTGGAGCAACCCGCCGGCGGAGTGGTCGGACATCTCCACGGCGGACAAGGTCCAGAACACGATCGCCCCCGTGTTCGACGTGCCGTCCGTCGTGATGCAGACGGCCATCACGACGCGCAACTCCTCCATTCCCATCCAGTTCTCCTGGGACACCAAACCCAATCACGTCTACCCTGATCCCGGGTACAAGTCAATCACTTCTTAAATTTGTCCCAAACTTCACGGCCTAATGAGCAATTAACGACAATTTTTTTTTCAAATTTCAATTGTAATTGCATGCTGAATTCGTAATTAACCCTTGGGTGTCTCTACAAATATAGGTCGATTTTTACCTTGTATGTCACCGAGCTGGAGCTCCTGGCCGGCAATGCCGTTCGCCAGTTCAACGTCACCATCAATGGCGTGATTTGGACCAAAGCCCCATACAAGCCGGTTTATCTGTCCACCGACGCCATGTACAACGGAGATCGACCCTACCGGGGCATCACCCGGTACAACTTCTCTTTGAACGCCGCGGGAAGCTCCACGCTGCCGCCGATACTCAACGCCGCGGAGGCTTTCTCCGTCATCTCCACAGCCGACCTTGCAACAGACGCTCAGGATGGTAAATATTTTTCTTTGTGCGTGATGATCTGATAATTGCGCCTCTTTGTGCTGTGTTACTGAACAAAGATAATGCATGCAGTTTCTGCCATCGGTTGATTGGTACATTTAGTTGTCTTTATTTGTGATTTGTGAATGATCTGATAACTGTGCTCCACTGCTCCTTTGCACTGTCACTGAAACAATGCAGTTTCTGCCATCACTGCAATCAAGGCCAAGTATCAGGTGAACAAGAATTGGACAGGTGACCCATGCGCTCCAAAGACACTGGCTTGGGATGGGTTAACCTGCAGCTATGCCATTTCAACCCCTCCAAGAATCACAGGAGTGTAAGTTTCATTTCAGTTTCTGCACAAACGCAAACAATGCTATTTCAAAAACTCTGCTTTCTAAACCATTGTGCATTTCTACAGAAATATGTCGTATGCCGGTTTAAGTGGCGATATATCATCTTATTTCGCCAATCTAAAAGAAATCAAGAAGTTGTAAGTAAGAAGTTTTTAATCCATTTTTACAATGATTTTGGAGTTAAATTTGCACTTTACATGCGCCTATATTTTATTTCAGGGACTTGTCACACAATAACTTGACAGGATCAATTCCTAATGTCATTTCACAGCTACAATTTCTCGCGGTTCTGTAAGCAGTCCGATCCATGTTGACATCTTTCTCTAATAATTTAGTCATACAATTTTATTGCCATAAGTCATAATCACCACTCTAAAATCTCGATGTTCTGTAAGTTCATAAATTTTGAGTAAGCATGTGCCTGTGAAAATCAAATATTGACTTCAACGTTATGTATATGTGATCCAGAGATTTGACAGGAAACCAGCTTAATGGATCAATTCCTTCTAGTCTTCTGAAAAGAAGTCAAGATGGCTCCTTGACCCTAAGGTTTTTCCAATATTTCTTTTGCACTTGATCAAAATTGTTAAACCATCATTCAAAAAACAAATGTTCACCATCTCTTCTTTTTGATAGGTACGGCAATAATCCAAACCTTTGCAGTAACAGCAGTTCATGCCAGCTCCCACAAAAGAAGAGCAACTCTATGCTTGCCGTCTATGTTGCTGTTCCAGTAGTGGTGATAGGAGCAGTTGCAGTGTTCCTGATTCTCTTCATCAGGAAGAAGAAGAACAAATGTGAGCTTTGGCATTAAAGCGCATCAATAATCAAGTAGTACTAATCAACTTCCTACATGTAAATGCAATTAACAGTCGATAATACTGGTTTCATTTTGCCTGGACAGCAAAGGGTGCTGTGAAGCCACAGATTTTGGGGAATGGCGTGCAGTCACACAGTCAGAATGGCAGTGGAGGGAGCCTGCTGGAACTGCACAACCGTCAGTTCACGTACAAGGACTTGGCAGTCATAACGAACAACTTCCAGCGAGTCCTTGGCAAAGGAGGGTTTGGCCCCGTCTACGACGGCTTCTTGAAGGATGGTACTCATGTGGCAGTTAAACTACGGGATGAGTCTTCCAGCCAAGGATATAGTGAGTTCCTGACAGAGGTAATGCTTGATCAAGAATAGTATATATATACAGCTTTTAAATGATCTAGTGATGATGACAGTGAATATGTTATCCCACTAATGCTTTTTACAATTGGCATATTATATATTCTGATACTATGGAATAGTTCAAACATGTGAATACAGAAATTCATAGCAAAGCATCAGCATTTTGCAAGTGAATGATGAAAACTTTCTTCCGACTCTAGAAGGTGATCTTTTTTTTTCCTTGTTCAGGCTCAGACTTTAACGAAAATTCATCACAAGAATCTTGTTGCATTAATCGGTTACTGCAAAGATGAGATACATTTGGCACTTGTGTACGAGCACATGTCAGAAGGAACTCTGGAAGATAAGCTTAGAGGTTTGCTAAGTATTTCATTTGTATATTCTTTTTAACTAAGGAAAGAGACTAAGTCATAGCCTTTGCACAATAAAAGGTACAGAAAACCATTTTTCATAAACAATTAAAACACATATTCCCGAATTTCAATATGAATGATATTTTCTCTTTGGAAGAAAAATACATTTACGATCTTCTGATCGACAGGCAAAGATCACAAAGGTAGATCTTTAACATGGAGGGAAAGGCTCCGTATCGTATTAGAATCTGCCCAAGGTACACATTCTAGCACAATAGTTCTATGTTAGTATTATTGTATATGGATCATACTGATATTGAAAAATAACAAGAATACCCTTTTTCCCTTTGCAAAAATGTTGCTCACAGGACTAGAGTATCTACACAAGGCATGCAGCCCACGCTTCGTGCATAGGGATGTGAAGTCATCGAACATCTTGCTGAATGCAAATCTTGAGGCCAAGGTTGCCGATTTTGGCCTGACAACGGCTTTTAAATGCGACGGTGACACACATGTATCCACAGTCAGGGTGGTTGGCACATATGGCTACCTTGCACCCGAGTATGTTGATCTTACTATGCATATTACCACGTTCTAGTTGCCTTGATGATTATTGACCAAATGGTACACTTCATAGTGATATGTTTTGTCATGGCACAGGTATGCCACAGCCCTACAAGTTTCGGAGAAGATTGACGTATACAGCTTCGGTGTGGTGTTGCTAGAGGTGATCACAGGACAGCCGCCCATTATAAAGCTCCCGGAACCTACTACTATCATCCAATGGACCCGGCAACGCCTAGCGCGAGGCAACATCGAGGGTGTGGTGGATGTAAACATGCCAGACGACCGCTACGACATCAACTGTATCTGGAAGGTAGCAGATGTGGCTCTGAAATGCACTGCACATGCTCCTGGGCAGCGACCCACAATGACTGACGTGGTGACACAGCTAAAAGAGTGTCTAGAGCTTGAGGAAACCAGCTTTAAAGGCGACACGAGTAGCAGTTATATGTCAGGGAGCAGCATAGACCCAAACTCGAGTTATAACACATATACCACTGAGATGAGCTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA020225