Os09g0482200

From RiceWiki
Revision as of 07:29, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0482200| Description = Peptidase A1, pepsin family protein| Version = NM_001070036.1 GI:115479814 GeneID:4347403| Length = 2324 bp| Defini...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os09g0482200

Description

Peptidase A1, pepsin family protein

Version

NM_001070036.1 GI:115479814 GeneID:4347403

Length

2324 bp

Definition

Oryza sativa Japonica Group Os09g0482200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:19175291..19177614

Sequence Coding Region

19175378..19175567,19176284..19177551

Expression

GEO Profiles:Os09g0482200

Genome Context

<gbrowseImage1> name=NC_008402:19175291..19177614 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:19175291..19177614 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtcctcgtcgtcgcttcttgttcgtgggagagcgttcgcgctggttgtggctgtagctctggtggctgctcctcgccggattaatggcggcgccgccgggccggcggcgaggacgaacgaccccaactggcacgtcttcagcgtcagctcgctgctgccgagctcggcctgcactgcatcgaaagcggcgtccaactcgtcggctctcggcgtcgtgcaccggcacgggccgtgctcgccggtgcaggctcgtcctcgcggcggcggcggcgctgtcacccacgccgagatcctggaacgcgaccaggccagggtcgactccatccaccgcaaggtcgccggcgccgggggcgcgccgtcggtggtcgacccggcacgcgcctcggagcagggcgtgtcgctgccggcgcagaggggcatctccctcggcaccggcaactacgtcgtgtccgtcgggctcgggacgccggcgaagcagtacgccgtgatcttcgacaccggcagcgacctgtcgtgggtgcagtgcaagccctgcgccgactgctacgagcagcaggacccgctgttcgacccgtcgctgtcgtcgacgtacgccgccgtggcgtgcggcgcgccggagtgccaggagctcgacgcgtcgggctgctcgtcggacagcaggtgccggtacgaggtccagtacggcgaccagtcgcagaccgacggcaacctcgtgcgcgacacgctgacgctctcggcgtcggacacgctcccgggcttcgtcttcgggtgcggcgaccagaacgccgggctgttcggccaggtcgacgggctgttcggcctcggcagggagaaggtgtcgctgccgtcgcagggcgcgccgagctacggccccggattcacctactgcctaccgtcgtcgtcgagcggcaggggctacctgtccctcggcggcgccccgccggcgaacgcgcagttcacggcgctggccgacggcgcgacgccgtcgttctactacatcgacctcgtcggcatcaaggtcggcggccgcgcgatcaggatcccggcgacggcgttcgcggcggccggcggcacggtgatcgactccggcacggtgatcacccgcctcccgccgcgcgcgtacgcgccgctccgcgcggcgttcgcgcgctccatggcgcagtacaagaaggcgcccgcgctgtccatcctcgacacgtgctacgacttcaccggccaccggacggcgcagatacccacggtggagctggcgttcgccggcggcgccaccgtcagcctcgacttcaccggcgtgctctacgtctccaaggtgtcgcaggcgtgcctggcgttcgcgcccaacgccgacgactcgtccatcgccatcctcgggaacacgcagcagaagacgttcgccgtcgcgtacgacgttgccaaccagaggatcggcttcggcgccaagggatgcagctga</cdnaseq>

Protein Sequence

<aaseq>MASSSSLLVRGRAFALVVAVALVAAPRRINGGAAGPAARTNDPN WHVFSVSSLLPSSACTASKAASNSSALGVVHRHGPCSPVQARPRGGGGAVTHAEILER DQARVDSIHRKVAGAGGAPSVVDPARASEQGVSLPAQRGISLGTGNYVVSVGLGTPAK QYAVIFDTGSDLSWVQCKPCADCYEQQDPLFDPSLSSTYAAVACGAPECQELDASGCS SDSRCRYEVQYGDQSQTDGNLVRDTLTLSASDTLPGFVFGCGDQNAGLFGQVDGLFGL GREKVSLPSQGAPSYGPGFTYCLPSSSSGRGYLSLGGAPPANAQFTALADGATPSFYY IDLVGIKVGGRAIRIPATAFAAAGGTVIDSGTVITRLPPRAYAPLRAAFARSMAQYKK APALSILDTCYDFTGHRTAQIPTVELAFAGGATVSLDFTGVLYVSKVSQACLAFAPNA DDSSIAILGNTQQKTFAVAYDVANQRIGFGAKGCS</aaseq>

Gene Sequence

<dnaseqindica>88..277#994..2261#agctgcacggacaaattaagcgagggagtgagagctagctaactcaggctcagccaactgatcgcgagctgtgacgaggtgatcaccatggcgtcctcgtcgtcgcttcttgttcgtgggagagcgttcgcgctggttgtggctgtagctctggtggctgctcctcgccggattaatggcggcgccgccgggccggcggcgaggacgaacgaccccaactggcacgtcttcagcgtcagctcgctgctgccgagctcggcctgcactgcatcgaaaggtagtgtcagttttgcagcctgtctcctttcgcaactgtatctgaaactgaagcagttactgcggaaaaataatgtaacctggtcggccattaaccatctcgatcgaacttgctttatataaatctcgtccatttgatcaaactgaggaattgaaaaacccaataagaaatctgttaggccaatttggagtatggttagtctgtatcctgcaaacaagtattgtgactgaagtagcatctgcattattctgaaattttagtaccactgaaactcagctaccgtgatagcatatgcagcatatatcgaatttataagatattctaagggaaacataatatgttttacagtagtattgatcagaattacatcaggtaatctgttgctgattgatgcgagtaaacttttggcatgctgatgactgatcactacacaaaattttcagtgcagtaaaaagctttggggcggttcagattaaagccatttttaaccataccattttttttaagttgtcaaaaaatatatacgtttagtttattgccaaatatgataaataaataaataatcctactaaaattttagcaatactaccatcttaccatcttgccaaaatttggtaagatttattttagctacaatctgaacattccctttctttgcttcgagttgcatttgcacaaattgcatttctcattttcccattctgtttttcttgcagcggcgtccaactcgtcggctctcggcgtcgtgcaccggcacgggccgtgctcgccggtgcaggctcgtcctcgcggcggcggcggcgctgtcacccacgccgagatcctggaacgcgaccaggccagggtcgactccatccaccgcaaggtcgccggcgccgggggcgcgccgtcggtggtcgacccggcacgcgcctcggagcagggcgtgtcgctgccggcgcagaggggcatctccctcggcaccggcaactacgtcgtgtccgtcgggctcgggacgccggcgaagcagtacgccgtgatcttcgacaccggcagcgacctgtcgtgggtgcagtgcaagccctgcgccgactgctacgagcagcaggacccgctgttcgacccgtcgctgtcgtcgacgtacgccgccgtggcgtgcggcgcgccggagtgccaggagctcgacgcgtcgggctgctcgtcggacagcaggtgccggtacgaggtccagtacggcgaccagtcgcagaccgacggcaacctcgtgcgcgacacgctgacgctctcggcgtcggacacgctcccgggcttcgtcttcgggtgcggcgaccagaacgccgggctgttcggccaggtcgacgggctgttcggcctcggcagggagaaggtgtcgctgccgtcgcagggcgcgccgagctacggccccggattcacctactgcctaccgtcgtcgtcgagcggcaggggctacctgtccctcggcggcgccccgccggcgaacgcgcagttcacggcgctggccgacggcgcgacgccgtcgttctactacatcgacctcgtcggcatcaaggtcggcggccgcgcgatcaggatcccggcgacggcgttcgcggcggccggcggcacggtgatcgactccggcacggtgatcacccgcctcccgccgcgcgcgtacgcgccgctccgcgcggcgttcgcgcgctccatggcgcagtacaagaaggcgcccgcgctgtccatcctcgacacgtgctacgacttcaccggccaccggacggcgcagatacccacggtggagctggcgttcgccggcggcgccaccgtcagcctcgacttcaccggcgtgctctacgtctccaaggtgtcgcaggcgtgcctggcgttcgcgcccaacgccgacgactcgtccatcgccatcctcgggaacacgcagcagaagacgttcgccgtcgcgtacgacgttgccaaccagaggatcggcttcggcgccaagggatgcagctgattacaatccgagatgatgaatcaatcgatcattttgttttgttacagtgacatatatatgggg</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0482200, RefSeq:Os09g0482200