Os07g0675000

From RiceWiki
Revision as of 08:52, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os07g0675000| Description = Acyl-CoA dehydrogenase, type1/2, C-terminal domain containing protein| Version = NM_001067154.1 GI:115474040 GeneID:4...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os07g0675000

Description

Acyl-CoA dehydrogenase, type1/2, C-terminal domain containing protein

Version

NM_001067154.1 GI:115474040 GeneID:4344267

Length

6318 bp

Definition

Oryza sativa Japonica Group Os07g0675000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 7

Location

Chromosome 7:29212807..29219124

Sequence Coding Region

29212880..29213146,29213652..29213792,29214265..29214396,29214922..29215110,29215240..29215317
,29216004..29216123,29216271..29216369,29216438..29216555,29216749..29217017
,29217165..29217359,29217474..29217616,29217833..29217917,29218007..29218216
,29218296..29218448,29218599..29218703,29218781..29218972

Expression

GEO Profiles:Os07g0675000

Genome Context

<gbrowseImage1> name=NC_008400:29212807..29219124 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008400:29212807..29219124 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgctgacctcggggctgctgcggccggtcgacgatgcgcacgcgatcgacgaggcggcgctgctgcgctacgcggcggagcacgtcgccgggttcccctccccggcgcgggggctggccctgacgcagttcggccacggccagtccaaccccacctactgcatcgaggcctccgcccccggcggggtcaccgcgcgctacgtgctgcggaagaagccgcccggcgccatcctccagtccgcccacgccgtcgagcgcgagttccaggtcctcaaagctttgggcacttacactgatgttcctgtccctaaggtgttctgtctttgcactgatgcaagtgtaattggaactcctttctatataatggagcatctagaaggactaatatacccagacaacaagttgacgggagtaactccaactaaaagaaagactatatatcttgcagctgctgaaactttggctgctatacacaaagttgacgtgactgcaattggactgcagaagtatgggagaagagataactattgcaaaagacaagtagaaagatgggggaggcaatatctctcttccactggtgaagggaagcctgctcgttaccagaagatgcttgatctagctcattggttgaaagaacatataccaaaagaagattcatcggcaggatttggaacaggtcttgttcatggtgattaccgtgttgataatcttgtttttcatccaacagaggaccgagttattggtgtacttgattgggaactatctactttgggtaatcaaatgtgtgatgttgcatacagctctttgccgtatattattgatgcaacaactagtacaggttattcttatggtggatttgaatatactggcattccagatggcattcccccactggaagagtacctcgctgcatactgctctatctctgcaagaccctggccggctgcaagttggaagttttatgttgccttttcgctttttcgaggggcatctatatatgcaggagtatatcacagatggactatgggtaatgcttcaggtggtgagcgtgctagattttctggcaagattgctaatgctatggttgaccgtgcctgggatatcataaatagagaaaatgtcctgagagaacagcctgctaggggtatgcatgcctcaaatggcccatcgcaagaattccaaagaaagcatgaaggatcaatttcgacaaaagatcaaggaaaatttgttcctagtgaaaaggttatgcagcttcgaaacaaattgatgaagtttatggaagattacatatacccgatggagagtgagttctataaacgcgcacattcgacctcaaggtggacaattcatccagaagaagaaaaactaaaagccttagcaaagagagagggactatggaacttgtttattccgctagacagtgctgctagagcaagagagcttctgtttgaggacatgtctcatggttctcctggaagttctgaggagcttttgctaggtgcaggtctcacaaatcttgaatatggatatctatgtgagattatgggccgttcaatttgggctccacaaatatttaactgtggtccacctgatacaggcaacatggaggtcctgttgagatatgggactaaggagcaacaaaagcagtggcttgttcctttgttggaagggaaaattcgttctggatttgcaatgacagaaccacaagttgcatcttcagatgcaacaaacatcgagtgttcaatatcaaggcaaggagatttctatgtgataaatggaacgaaatggtggaccagtggggctatggatccaaggtgccaaattcttgtattaatggggaagacagatttttctgcacctaaacataaacagcaatcgatgattttagttgatgtcaaaacacctggagtgcagataaggagaccgttgttagtatttggtttcgatgatgcacctcatgggcatgcagagattacttttgagaatgtgcgcgttccagccacaaatattctccttggggaaggccggggttttgagattgctcagggaagactaggccctggaagattacatcattgcatgagactaataggggcagcagaacgtggcatgaatttgatggtcgagagggccttaagtaggaccacttttggaaaaaagattgcgcaacatggttcctttttagcagatctggcgaagtgccgggtagaactggagcaggctagacttctggtgcttgaagcagccgatcaacttgaccgacatgggaacaagaaagctcgtggtatccttgcaatggccaaggtggcagctccaaatatggccctgaaagtgcttgacatggcaatgcaagttcatggtggtgctggtctctcatcagacacagttctatcacatctatgggcaactgctaggacactgaggatcgccgacggccctgatgaagttcatcttgggacaatcgctaagctggagctgcaaagagcaaggatgtag</cdnaseq>

Protein Sequence

<aaseq>MLTSGLLRPVDDAHAIDEAALLRYAAEHVAGFPSPARGLALTQF GHGQSNPTYCIEASAPGGVTARYVLRKKPPGAILQSAHAVEREFQVLKALGTYTDVPV PKVFCLCTDASVIGTPFYIMEHLEGLIYPDNKLTGVTPTKRKTIYLAAAETLAAIHKV DVTAIGLQKYGRRDNYCKRQVERWGRQYLSSTGEGKPARYQKMLDLAHWLKEHIPKED SSAGFGTGLVHGDYRVDNLVFHPTEDRVIGVLDWELSTLGNQMCDVAYSSLPYIIDAT TSTGYSYGGFEYTGIPDGIPPLEEYLAAYCSISARPWPAASWKFYVAFSLFRGASIYA GVYHRWTMGNASGGERARFSGKIANAMVDRAWDIINRENVLREQPARGMHASNGPSQE FQRKHEGSISTKDQGKFVPSEKVMQLRNKLMKFMEDYIYPMESEFYKRAHSTSRWTIH PEEEKLKALAKREGLWNLFIPLDSAARARELLFEDMSHGSPGSSEELLLGAGLTNLEY GYLCEIMGRSIWAPQIFNCGPPDTGNMEVLLRYGTKEQQKQWLVPLLEGKIRSGFAMT EPQVASSDATNIECSISRQGDFYVINGTKWWTSGAMDPRCQILVLMGKTDFSAPKHKQ QSMILVDVKTPGVQIRRPLLVFGFDDAPHGHAEITFENVRVPATNILLGEGRGFEIAQ GRLGPGRLHHCMRLIGAAERGMNLMVERALSRTTFGKKIAQHGSFLADLAKCRVELEQ ARLLVLEAADQLDRHGNKKARGILAMAKVAAPNMALKVLDMAMQVHGGAGLSSDTVLS HLWATARTLRIADGPDEVHLGTIAKLELQRARM</aaseq>

Gene Sequence

<dnaseqindica>74..340#846..986#1459..1590#2116..2304#2434..2511#3198..3317#3465..3563#3632..3749#3943..4211#4359..4553#4668..4810#5027..5111#5201..5410#5490..5642#5793..5897#5975..6166#agtggcatcggcgcatcgcctcctccccttccttctcttctctctcctagtcgtcgccggcggggagcgagcgatgctgacctcggggctgctgcggccggtcgacgatgcgcacgcgatcgacgaggcggcgctgctgcgctacgcggcggagcacgtcgccgggttcccctccccggcgcgggggctggccctgacgcagttcggccacggccagtccaaccccacctactgcatcgaggcctccgcccccggcggggtcaccgcgcgctacgtgctgcggaagaagccgcccggcgccatcctccagtccgcccacgccgtcgagcgcgagttccaggtcggggtttcgtttctctgtccccctcttctcgcttcgatttgcagcgtcccgtgatcgatttagctccactttgtccgatggtatgatgggtactggtgatcgattgaaagctccagtttctccgatagtatgatggatgccgatctgatatgattggtaggtaagggcgggcttgtttgctcgagtcaaagtgcgaaagcactaacgaaagtggaatcagcatttcctggtgaaaaggctcaaaaagtcaggagtcatgcgtccagatttctgagttccatttgatgatagtgatgcaaattactctggaattatcatgtcgaacttatttcactgattgaactacgtaaatccagctgattagtgaaaagtgtacatgtaaagtgcatatgctactggctaggtagtttttttttcctgtttagtactaagagaaatacgaaactgacgagcgaatgagcgctatgagctaattccttgagttgtgtttgaattggagcaggtcctcaaagctttgggcacttacactgatgttcctgtccctaaggtgttctgtctttgcactgatgcaagtgtaattggaactcctttctatataatggagcatctagaaggactaatatacccagacaacaagttgacggtacgcttcttgtgagcattctttgtcttgcatattcttcagactgttggtatatgcattacttactgggtgatgatttagtatgaaatctgtacatttttacctatcaggtaggcgtatttctaggtcatgaggttccatgtagcaaataccgggcatttattcttctatgtgcgtaaggaacacaccaaatgaaacctagtattggagttgattaagaagttgctaccttgccgttggacagcatctatgcgaccctgattaaacactaaaattatagaaggcaataacatagcaatttttcaaatctttcctccttacaccattacagttgatgtagcagctgatatgagaaatctcaccatccaatgacgggtttatatatgctccttgaaatgtattccttgaactgataatgattgtcttcatgatgatttagtaaaaagaatttctgtgccctttgtttatgcagggagtaactccaactaaaagaaagactatatatcttgcagctgctgaaactttggctgctatacacaaagttgacgtgactgcaattggactgcagaagtatgggagaagagataactattgcaaaagacaagtaggtgataccatgtttcatggtatttaccttatatttgattacgcttatctcaatctctctgattctgattgctttgtaaaaacaaaacaaaactccattcatttctgttgtcattgagttgcataatatagttttttgggcatcggtacagttaacagctgagctgaatgtaactctagaatcttctctccccattttttttgtttattttaactggggtcaggccatagctcctaggccaaggaaaggaattggatactcctaggtggtgtatcagtagtatactaatattcttaatctataagtgaaatatgcatatagacatgtagtttctcgtgagttttgagtatcacttgcttatgtgagtacagcaatggattgcctgttcccagctgttacaacctatgatttgatcactttaagttcaagaggagagttttagttgtcatgttgtgatttgtgaatgatgattgctgtgataatccatttgcatctgaagatagttaacctattctggtttaggtagaaagatgggggaggcaatatctctcttccactggtgaagggaagcctgctcgttaccagaagatgcttgatctagctcattggttgaaagaacatataccaaaagaagattcatcggcaggatttggaacaggtcttgttcatggtgattaccgtgttgataatcttgtttttcatccaacagaggtttgcatcttttttggcatcataagtatttatgcatttcatcaaaaacaagtatttatgcaatcttctaatgcatcacgggcatattactagttgtttaagttcttcaacataccacttctcatgcaggaccgagttattggtgtacttgattgggaactatctactttgggtaatcaaatgtgtgatgttgcatacagctctttggtatgaagcactttatatttttaaaatattgttatgcatcctttttatgttgtgtttttgtgctgttattagacagtcttaactcttgaaagaaacattaaggaatgatatgtcttaactgaatttagttatatagtatatataaatgaggagtatacatagtaatttcttttagtcactctaatactttgatagcatttgtatttaattccagagatcttgacattttttctggccatagttggtaacaaccagagaaatatgtgcatacataccccaattagaaacaaagctggcatgcatattaatttttcaattgatttagtgtaatatttcttgcatgatagacttacatttgatatggaatcagcttgcagcatgtcaatatgtttacaaagcaactatatctgctagcactgagtacatatctttggaattttggatttgctattatctcaacatgctatatttgctactccactatcaatgtccctactttctaaccacaccttgtaccaataactaatcaattatgtctgatagcacttaaattgattcgtagtactaggatgtgtcccatccatccaaaatcccttatattttgggacggacggagtatgttttactatgtgttcaatggtattattaatcactttgatcttgattattatgatttgtacgtgcagccgtatattattgatgcaacaactagtacaggttattcttatggtggatttgaatatactggcattccagatggcattcccccactggaagagtacctcgctgcatactgctctatctctgtaagaatcacgtctcctacatcttggtctacaagttattcttatggtggagttgaacaacatcttgatactggctgaatatatacaccaaacttattgcttctttattcctcattaatcattatattctttaaaattgtttctcaggcaagaccctggccggctgcaagttggaagttttatgttgccttttcgctttttcgaggggcatctatatatgcaggagtatatcacagatggactatggtacttatctgtaacccttgaaatctaattctgcttatatattctaatttatttgagctgtcacacagggtaatgcttcaggtggtgagcgtgctagattttctggcaagattgctaatgctatggttgaccgtgcctgggatatcataaatagagaaaatgtcctgagagaacagcctgctaggggtaattatattttataatctctccacagtccataccatatggttggcgagtgcaaatgctgcttatttttttcttaaatttctatggttatttcgtaataatagtgttggcaaagacatgaaaaatgtggttatatttctttattctttccaagtctaataaaaaaaattaacttctttacttttaatatcaggtatgcatgcctcaaatggcccatcgcaagaattccaaagaaagcatgaaggatcaatttcgacaaaagatcaaggaaaatttgttcctagtgaaaaggttatgcagcttcgaaacaaattgatgaagtttatggaagattacatatacccgatggagagtgagttctataaacgcgcacattcgacctcaaggtggacaattcatccagaagaagaaaaactaaaagccttagcaaagagagagggactatggaacttgtttattccggtaactttccctttttttatattaaaaccttaaggcccttcatttttttcctgatacattgattcatcacacatatttgtcgtgttagtactgtagactgcatttattttggactttcttcttctaatcaaaatgtttgatctgcagctagacagtgctgctagagcaagagagcttctgtttgaggacatgtctcatggttctcctggaagttctgaggagcttttgctaggtgcaggtctcacaaatcttgaatatggatatctatgtgagattatgggccgttcaatttgggctccacaaatatttaactgtggtccacctgatacaggcaacatggaggtaagatacaaattatcatatttttttataagaaagactttaaaatacattcaagtatcttgttaatagagcatatgttgaggagcaacactccatatctccaccttgttataggtcctgttgagatatgggactaaggagcaacaaaagcagtggcttgttcctttgttggaagggaaaattcgttctggatttgcaatgacagaaccacaagttgcatcttcagatgcaacaaacatcgagtgttcaatatcaaggtgagaaaaaagggaaatatttgcatgcattttgttgccagtccttgaggctgttgttctttaattacaagttattatctactttaagggctaacagacctaattcagtgtttattcgggaaactaatgatactgtacttcttaccactatcttggacattgtgtagtttaagctgtttacgttgtgcttactcgcaagttatttgctcttgacaggcaaggagatttctatgtgataaatggaacgaaatggtggaccagtggggctatggatccaaggtgccaaattcttgtattaatggtaattgcaacatttatcaatgaatgcatgctgtcaatagttcaatttttttattttaatattaaagctgtttgtttctctatatacaggggaagacagatttttctgcacctaaacataaacagcaatcgatgattttagttgatgtcaaaacacctggagtgcagataaggagaccgttgttagtatttggtttcgatgatgcacctcatgggcatgcagagattacttttgagaatgtgcgcgttccagccacaaatattctccttggggaaggccggggttttgagattgctcaggtaagccgtattctgcatcttgtaccaattatgctactgtaatatgtgctctccacatcatatttaagatgctttgcagggaagactaggccctggaagattacatcattgcatgagactaataggggcagcagaacgtggcatgaatttgatggtcgagagggccttaagtaggaccacttttggaaaaaagattgcgcaacatggttcctttttagcagatctggcgaaggtatgacctgtttatctgcttaaccatggtcttttatgaagttccatcattttttctattgctcagttcaggagtgtcctaaaatatttttagtgcattttcctgttgtgttctgttatttgcattccttgacatgtacgtggaatccagtgccgggtagaactggagcaggctagacttctggtgcttgaagcagccgatcaacttgaccgacatgggaacaagaaagctcgtggtatccttgcaatggccaaggtgagtcaaggatcagcaccttctttctaatcgtttctagcaagaacagaagttcagtgaaatatggcctcatgtaggtggcagctccaaatatggccctgaaagtgcttgacatggcaatgcaagttcatggtggtgctggtctctcatcagacacagttctatcacatctatgggcaactgctaggacactgaggatcgccgacggccctgatgaagttcatcttgggacaatcgctaagctggagctgcaaagagcaaggatgtagtctcgcgtcatcaggatgccgcccagatttcatgaataataaatactaggggagagggaaatcgttgtgtaacatgtccccgtttttattgaacgaaattggaaatgacactacgatagttgtcacttgtatagaatggttgatatgtggcg</dnaseqindica>

External Link(s)

NCBI Gene:Os07g0675000, RefSeq:Os07g0675000