Os06g0116100

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Revision as of 09:00, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0116100| Description = Similar to GAMYB-binding protein| Version = NM_001063152.1 GI:115466035 GeneID:4339927| Length = 6618 bp| Definitio...")
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Gene Name

Os06g0116100

Description

Similar to GAMYB-binding protein

Version

NM_001063152.1 GI:115466035 GeneID:4339927

Length

6618 bp

Definition

Oryza sativa Japonica Group Os06g0116100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:884835..891452

Sequence Coding Region

886899..886906,887029..887107,887390..887458,887547..887636,887725..887863
,888466..888568,888664..888716,888801..888867,889147..889255
,889341..889406,889499..889567,889676..889745,889833..889952
,890052..890201,890611..890873

Expression

GEO Profiles:Os06g0116100

Genome Context

<gbrowseImage1> name=NC_008399:884835..891452 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:884835..891452 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagaggtataagattattaaggaagttggtgacggaacatttgggagtgtttggcgcgcgatcaacaaagagagtggtgaagtggttgcaatcaagaaaatgaagaaaaaatattattcatgggaggagtgcatcaatctccgtgaagtgaagtctttgcgaaggatgaaccatccgaacattgtgaaactcaaggaagtcataagggagaatgatatgttattctttgtttttgaatacatggaatgcaatctctaccagctgatgaagagcagggggaagcccttttcagagactgaagtccgaaattggtgttttcagatatttcaagctttgagtcacatgcatcagcgtggatattttcaccgcgaccttaagcctgaaaatttgctagttacaaaggagctcatcaagatagcagattttggacttgctcgtgagatttcttctgaaccaccatacacagaatatgtgtcaactcgctggtaccgtgcccctgaagttctgctccaagcttctgtttacaactcagcagttgatatgtgggcgatgggtgccatcatcgcggagcttttttcactgcgacctcttttccctggttcaaatgaagcagacgagatttacaaaatctgtagcattcttggtactccgaatcagcgtacctgggctgaaggactgcagcttgcggcatctattcgttttcagtttccccagtctggaagcatacatctttcggaagtggttccctcagcaagtgaagatgcgatcagccttatttcgtggctctgctcatgggacccacaaagaaggccaacagcggtggaggttttgcagcatcccttctttcagccatgcttctacatccccccttcacttcgattcagatcaacaaacggatatgcagcaacaccaccatcagttggggctaaaggagctgtggatcagaagaatgctaggagatattccgtggggcccttatctaatgggagaccagccgttaattactcatacttgagcgctaacaccccggcaagagcagctggtgtgcaaaggaagctggagttggatcaccaggtgaatatgaattcttgtcaggctccagagggtaaccataaactgacaaaggcagaggcaatgaatcagccttggtccagaccaccaccagcagcagcagcagtaaggagcaatggaaattacttcactaaagaccagggccctcgtgcgcctgacattgcggagaagctgtctcagctgacagtgggctccaacagggtgccaagcttggcttcggacaagtttgtggatatgaaggcaagaacccatgggaataccatgaagcggcctttgcctcctgtgggaaccaggacatggcacgccccggccgaccccttccggcgcccatacgagatgccaggcgacagggctttccttcccaggaagctcgttagctga</cdnaseq>

Protein Sequence

<aaseq>MERYKIIKEVGDGTFGSVWRAINKESGEVVAIKKMKKKYYSWEE CINLREVKSLRRMNHPNIVKLKEVIRENDMLFFVFEYMECNLYQLMKSRGKPFSETEV RNWCFQIFQALSHMHQRGYFHRDLKPENLLVTKELIKIADFGLAREISSEPPYTEYVS TRWYRAPEVLLQASVYNSAVDMWAMGAIIAELFSLRPLFPGSNEADEIYKICSILGTP NQRTWAEGLQLAASIRFQFPQSGSIHLSEVVPSASEDAISLISWLCSWDPQRRPTAVE VLQHPFFQPCFYIPPSLRFRSTNGYAATPPSVGAKGAVDQKNARRYSVGPLSNGRPAV NYSYLSANTPARAAGVQRKLELDHQVNMNSCQAPEGNHKLTKAEAMNQPWSRPPPAAA AVRSNGNYFTKDQGPRAPDIAEKLSQLTVGSNRVPSLASDKFVDMKARTHGNTMKRPL PPVGTRTWHAPADPFRRPYEMPGDRAFLPRKLVS</aaseq>

Gene Sequence

<dnaseqindica>2065..2072#2195..2273#2556..2624#2713..2802#2891..3029#3632..3734#3830..3882#3967..4033#4313..4421#4507..4572#4665..4733#4842..4911#4999..5118#5218..5367#5777..6039#agaaaaaaaaatccccgacgcgagaggagacgagacgaagccatccgatccccacccttccccccctccccctcccccctcttcagcgctggaggcggcggcggcggcgtcccctggatccctcggcggcggcggtggcgcacggttatgccgagaggcacccaggtctgtctcgctcgctcgctcgctcgtcgtcccactttccgattcaattttgggctgatttggtggtggtgaatcgaatcgaatcgacgcgtggcttggctgtgccatggttggggtgtctgatgagtttgatttggggatcgcgcggtggttgctgcgggcgccgggggaggtgggggtgggggtggggatcgggtgattgattcggaatttcggatcggtgcgggggtttgttgggggtggatgaattgttttggttcgaatttcgagggagtttagcagggttgatttgggggattggcgcatcatgatttctacgggatttggtggaggagttgttggttccgatgtgtgtgagctagggttcatcagtcacggatattcctcacgtctattcatgaatcgcagttcctgagcatccatcatgccgatttatgctaggttgcacatgttatgcgtctgatgtttaatttactggcaactgattataaacttactctagttctcaatacttttttcatgtctagtctcatcacttggcatcatgttggtaccagtaatatgtatgctgtagcaagatcactgtcttaattgtgcaggaagcgagaattcaatcaattcgttgcaatcaatagatatggtgtagtatcaatttatcactgttgaggtcctatgttaattttggtaacgttgtttcacggcacatgcatccatagactcaaatctcatagtgtttctgggacgaaagtaaattagtgcatctcgggtgctctgtgctttgatgcttgtaggtaacatgaattggcacatgcatgtgacgtctaatttcatgggtgctttggtgctccttggtagcatgaatcgataaatgccctcttctcactttgactatgtttttccctgttacttcactgacacatgttttcaaccattgctttgctgcttatttatattcattttgcatgcctttgcaggttccaacaccgtgcactgccagggctctagcattctcattaaggatatggagtacaccctctacaccacaagttcctctgtattgcacatttcgctgctcgaggaagttcttggctggaggttttctctttacggagacttcctcgttatctcttttgtcaactgcacctgaagatcacacctcattcagcagccgtcttgcctggtcccatgctattgcacattagagtcgactattgattacagtgcagctgtagcacatttcttcgagcatggtgcatctcatcctcttgcatccttccggtagtttttgttgtggcactgatcagccagcaaaagttaccatcggaacttctttggacaatcggatctgacattagatcttcattgtcaggcttaatctctaggtatgcttttatttgagaagctaattgcctgatatttaaatggcatgtgttcctgttctcatgaatttcttgctctcagcaggttctggttttctttacttccgtttgctctcttctcccctacactgcttgctttttgtttgatcatcccaagatttggtgcatactacgcagttctttgtcaggctttgtgtttgatggcgtaacaaaccggtatgcttgaaatttctacatgacatgcattgttcatgattcggttacatgtaattattatgttactcagcctatttgtattttttatttcttccaaatcttctgatctatttgttgctctttcagagtgaaggtgttcaagtttttttgtcagagtatgggtattgcttatagagtttttccagaagcgttgagtggctttgctgatctacccttcaaaggcatttcagcaatacacatatgagtcttgttcacaacagggctcttctagaataagaccagctttactctccagctagtaaaaatggagaggtaaataacaccccttctctctcagatgttgtgtgtgtgtgtatgtgtgtgtaagggctctctcagatgttcaagagcttgtacctgctgagtgctaacttctttcctgcatcatgcttcaggtataagattattaaggaagttggtgacggaacatttgggagtgtttggcgcgcgatcaacaaagagagtggtgaagtggtatgccactctacttgccccaatatttgtaattttgtttatgttatgacttattatttttttcagtagctaagcagtttggctgcttgtttattggtacactggagtttagtatgctaggtgattactttatattgtacctagtagtaattaaatctgaattaaactggagctaactcttaccgtcatgatctatcttatgaaaagaagtgacagtgacttgatctgccttatcaatggcataattttttgacatattattaacatatctggccttgacaggttgcaatcaagaaaatgaagaaaaaatattattcatgggaggagtgcatcaatctccgtgaagtgaaggtgctttattatgcaacatgtaatcaagtttgatcatgatatctattatacttcattaatatattttttttttgtgtgcgcatcccagtctttgcgaaggatgaaccatccgaacattgtgaaactcaaggaagtcataagggagaatgatatgttattctttgtttttgaatacatggtttgtatttcttaattagacgcttttgatttggcatttgtgacctctgaagtgattgaagttttttctgtttacgtggtgattttaggaatgcaatctctaccagctgatgaagagcagggggaagcccttttcagagactgaagtccgaaattggtgttttcagatatttcaagctttgagtcacatgcatcagcgtggatattttcaccgcgaccttaagcctggtatggctggtgggctgttatttttaaacctggcatgctttctaatgcttgagactgggagttgtttatgatgttctgttgtgcaatgcggcattaagtgataatgacatcaaaacatgtctatttaattagtgctgtatagatggggaacaatgcatttagctgttgacactgcctgaaacgttttgatttgttgcaacaaccaattctgcattgatgatgcttcttgtttgatatgtgtttcaacaagcaattttgcattgatgctgatctgtttcatcaatcaattttgcatctatgatgcttgaagctgtcttatatttcagttcttgtgccccctttatgcagtgtgatatatgcatttgttaagcaagcatttgaagcagagacctagaaaaatgcaaacataaagttgttgccctaaataattactagtagagtacttaagttacctgtccagaggagcaaaagagctagaagaagcaatgtggcatcaacctttgctaacttatctgcaatatgttcagttgggattgaccatgattattgttgttagaatttaccaactatcttattggtcctgtaactttatgatatttcagaaaatttgctagttacaaaggagctcatcaagatagcagattttggacttgctcgtgagatttcttctgaaccaccatacacagaatatgtgtcaactcgctggtgcgccatgcaattcttatacttgttaaactatatacacaacaacagaatttagataggagtattaaatatccacttgttcactatcaacataggtaccgtgcccctgaagttctgctccaagcttctgtttacaactcagcagttggtgagtgaagaatatttgtgcctttatgagataactatttgctctcaattacaatatgtttatttgcttatccccccgttccagatatgtgggcgatgggtgccatcatcgcggagcttttttcactgcgacctcttttccctggttcaaagtatgcacagtattttcttaatcacatccagttatcttgtttctttggtttaaatgtgcgaaatagttcgaacctcaaagttcaatcttaattatgacttgagggctaatattaagcttactgttatagatgaaataatcaccattgacacattacatctactctagtaactatgtgtaatgcgaaatcttatgactgctgtggcatggcactatgtgtttccatagccttcccttggagaaacggcatttataactcctctcattttctgtccatcagtgaagcagacgagatttacaaaatctgtagcattcttggtactccgaatcagcgtacctgggctgaaggactgcagcttgcggcatctattcgttttcagtttccccaggtagaatcttttggtgacattatttttactccagagtatggcacaagagtgattggtgcttaactgctacaccaaattcttgcagtctggaagcatacatctttcggaagtggttccctcagcaagtgaagatgcgatcagccttatttcggtaaacaattaatggctccagtatttcctttggtgcgtaaagatgaccttgcccgaaattaattgtaaattacaagttactatctgcaacagtggctctgctcatgggacccacaaagaaggccaacagcggtggaggttttgcagcatcccttctttcaggttatttttctggttattactttccatagtacatgatgaacttatttatgagtttgcggtagttgtatatttgttattttgaaatatcataattgtttttttttacagccatgcttctacatccccccttcacttcgattcagatcaacaaacggatatgcagcaacaccaccatcaggtttgtcattatcctggcgatgtagaaactcatttttttcattattagaacattgttattgaagcaatttgaataattgatctacagttggggctaaaggagctgtggatcagaagaatgctaggagatattccgtggggcccttatctaatgggagaccagccgttaattactcatacttgagcgctaacaccccggcaagagcaggtatacccatttaagatggtttgtcatgctcatttcataggggaggatttgtggctgttgcacttggaattataacaaactataattacctccttgtagctggtgtgcaaaggaagctggagttggatcaccaggtgaatatgaattcttgtcaggctccagagggtaaccataaactgacaaaggcagaggcaatgaatcagccttggtccagaccaccaccagcagcagcagcagtaaggagcaatggtgagtgttgttttaaacaaactatgggggtgtttagatctaggggtgtaaaattttggtgtgtcacatcaagtattatatagggtgtcgcatggggtgttcgggcactaataaaaaaactaattagtccgtcattagcagatgtttactgtagcactacattgtcaaatcatggagcaattaggctcaaaagattcgtctcgcaaattagtcgcaatctgtgtaattagttattttttagcctatatttaatacttcatgcaggtgttcaaacgttcgatgtgacatggtgtaaaatttttgtgggggaactaaacagggcctatagttgaaatgatttttgtctctttatttttgttgatatcatgcatgcatctatttaacttcacttctcgcatcccttatgtaggaaattacttcactaaagaccagggccctcgtgcgcctgacattgcggagaagctgtctcagctgacagtgggctccaacagggtgccaagcttggcttcggacaagtttgtggatatgaaggcaagaacccatgggaataccatgaagcggcctttgcctcctgtgggaaccaggacatggcacgccccggccgaccccttccggcgcccatacgagatgccaggcgacagggctttccttcccaggaagctcgttagctgaagactacgatgaaacggaagctgccgccacactcctctttgctaccctttcaccaatcctcctactatcctgaaaaataagaagccaacagagccgatctccctcgaagagtttttagtgctgtttcctagtagtgtcgtattggttgtgaatctcataccccaataaaaatggagatgtgccagcctgctggtactcctatcttgccttgcattggcatccatccatgacagcacctcgaggatgcagctgatcctcgggggcatgcaagcatggccgggcgcgtctgcatggaaaccttgtgtttcgagtcggaactgtgtgttatttgctccctagtgacgtgacgcttgttgagtcgtttctgctctgcgttggctggcccctgcctgtgacatcgcagctactacagtactactactactatgtcaaatattgttataggactattaccactacgtggtgcggctatgcttgtccagttgtttatgcaccatgcaggcatgcatgagtgcatgaccagcgcgtctgcagcaatcaaataataataataaatatatactattgctattattactg</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0116100, RefSeq:Os06g0116100