Os06g0116400

From RiceWiki
Revision as of 09:00, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0116400| Description = High-affinity nickel-transporter family protein| Version = NM_001063155.1 GI:115466041 GeneID:4339930| Length = 1467...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os06g0116400

Description

High-affinity nickel-transporter family protein

Version

NM_001063155.1 GI:115466041 GeneID:4339930

Length

1467 bp

Definition

Oryza sativa Japonica Group Os06g0116400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:907857..909323

Sequence Coding Region

907995..908813,909002..909286

Expression

GEO Profiles:Os06g0116400

Genome Context

<gbrowseImage1> name=NC_008399:907857..909323 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:907857..909323 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcaatggagaggcttatctcttcgccgctcctcccgcgccggcctccccgcgccgccttctcccgcccgccgccctccctcgccgccgcgccaccccaccaccgcgccggcggtgcggcctccgggtacggctccaggccgcctctcgcctcgctcctcctctccaggcaccaccaccaccaccagcctccggtcctcgcggccaatcctgctgccgatgtggccgccggcgaggctgtccctcccgccaccgccaccgccagccggcgcttcctccagaaggtggcgtcggctgcggctgccactctgttggcgacgattgcactgacgctgatccagccggcgtgggcgccgccggcgttggcgtcgttccactcggcggcgaaggcgggaggtggcatcttcaagtcggagctgctcagcagcgcgtggacggggttcctggccggctgcctgcacacgctctccgggccggaccacctcgccgcgctggcgccgctgtccatcgggaggtcgcgggtggagagcgccgccgtgggcgcgctctggggctgcggccacgacgccggccaggtcatcttcggcctcctgttcctcagcctcaaggaccgcctccacatcgaggtcatccgaacgtgggggacccgcgtcgtcggcctcacgctgctcgtcatcggcgccctcggcatcagggaggccaccgaggtgcccacgccgtgcgtcgcgctggagaacggcggcggcggcggcggcgcgcaccgtggcccgctcgatgctctaccagccaccaggaagaagatcaccttcgccacgttcgccaccgggatcgtgcacgggctgcagcccgacgcgctcatgatggtcctgccggcgctcgccctcccgtcgcgcgtcgccggcgcggcgttccttggcatgttcctcgtcggcaccgtggtcgccatgggcagctacaccgtcctgatcggctcttgtacggaggcgctcaaggagagggttcccaggatcacggagaagctgacatgggctgcctcgctcgtggccatctccatgggcctcggcatcctcatcagccagtctctcggctttagcttgtactga</cdnaseq>

Protein Sequence

<aaseq>MAMERLISSPLLPRRPPRAAFSRPPPSLAAAPPHHRAGGAASGY GSRPPLASLLLSRHHHHHQPPVLAANPAADVAAGEAVPPATATASRRFLQKVASAAAA TLLATIALTLIQPAWAPPALASFHSAAKAGGGIFKSELLSSAWTGFLAGCLHTLSGPD HLAALAPLSIGRSRVESAAVGALWGCGHDAGQVIFGLLFLSLKDRLHIEVIRTWGTRV VGLTLLVIGALGIREATEVPTPCVALENGGGGGGAHRGPLDALPATRKKITFATFATG IVHGLQPDALMMVLPALALPSRVAGAAFLGMFLVGTVVAMGSYTVLIGSCTEALKERV PRITEKLTWAASLVAISMGLGILISQSLGFSLY</aaseq>

Gene Sequence

<dnaseqindica>511..1329#38..322#ctcccgagacgaaccacccgaagccgcagcagcagcgatggcaatggagaggcttatctcttcgccgctcctcccgcgccggcctccccgcgccgccttctcccgcccgccgccctccctcgccgccgcgccaccccaccaccgcgccggcggtgcggcctccgggtacggctccaggccgcctctcgcctcgctcctcctctccaggcaccaccaccaccaccagcctccggtcctcgcggccaatcctgctgccgatgtggccgccggcgaggctgtccctcccgccaccgccaccgccagccggcgcttcctccagaaggtgagcgcctcgttgcccgccagttttccgtgtcgcgcctcactcgttcttgcatgtctcgtgtgatgattactgatgtgaatttcttcttcttcttccaagaattgcttctgttttgtgatgttgttgtggtcggaggagtccaagagttagcggagattattgagctcacgcgtttggtttgacaggtggcgtcggctgcggctgccactctgttggcgacgattgcactgacgctgatccagccggcgtgggcgccgccggcgttggcgtcgttccactcggcggcgaaggcgggaggtggcatcttcaagtcggagctgctcagcagcgcgtggacggggttcctggccggctgcctgcacacgctctccgggccggaccacctcgccgcgctggcgccgctgtccatcgggaggtcgcgggtggagagcgccgccgtgggcgcgctctggggctgcggccacgacgccggccaggtcatcttcggcctcctgttcctcagcctcaaggaccgcctccacatcgaggtcatccgaacgtgggggacccgcgtcgtcggcctcacgctgctcgtcatcggcgccctcggcatcagggaggccaccgaggtgcccacgccgtgcgtcgcgctggagaacggcggcggcggcggcggcgcgcaccgtggcccgctcgatgctctaccagccaccaggaagaagatcaccttcgccacgttcgccaccgggatcgtgcacgggctgcagcccgacgcgctcatgatggtcctgccggcgctcgccctcccgtcgcgcgtcgccggcgcggcgttccttggcatgttcctcgtcggcaccgtggtcgccatgggcagctacaccgtcctgatcggctcttgtacggaggcgctcaaggagagggttcccaggatcacggagaagctgacatgggctgcctcgctcgtggccatctccatgggcctcggcatcctcatcagccagtctctcggctttagcttgtactgatccgccatccctcgcgacacctccttcttcttcttcgccattgttaagcttccactgcctccactgtaggaatctgccatgagaattttgcaaatgttgcttgttgagatccaggagaattcaagtttagttcacaag</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0116400, RefSeq:Os06g0116400