BGIOSGA023489

From RiceWiki
Revision as of 16:47, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA023489

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA023489, complete gene.

LocusTag

OS06G0685300

Ensembl Transcript ID

BGIOSGA023489-TA

Ensembl Protein ID

BGIOSGA023489-PA

Length

5318

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:30461315..30466632

Sequence Coding Region

30461315..30461422,30462792..30462890,30463594..30463644,30463800..30463923,30464171..30464289
,30464360..30464461,30464530..30464604,30464796..30464872,30465326..30465575
,30465717..30466070,30466213..30466347,30466504..30466632

Genome Context

<gbrowseImage1> name=IndicaChromosome06:30461315..30466632 source=RiceIndica06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome06:30461315..30466632 source=RiceIndica06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGGGCTCGTCGGTGGCCTCCTCGGCTTCGGCGTCGGCCTCCCCCTCGGCATCGCCGTCGCCTACCTCGTCTACCTCCGCTTGTTCGCCCCTCGCCGCCGTCTCCAGGATCCTATTATTAGACCACTACGTGACTTGGATTCTGAGACATTACAGACAACTATACCAGATATTCCGTTGTGGATGAAGTGTCCAGATTATGAACGGGTTGACTGGATTAACAAGTTTATTTTTGATATGTGGCCCTTCCTTGATAAGGCAATCTGCAACACAATAAGAAGTGTAATCAGACCAACATTTGATCAATATGTTGGACAATATGGAATAAAATCAATTGAATTTGGGCACTTAACACTTGGGGCTCTTCCTCCTACGTTCCAAGGAATTAAAGTTTATGAAATGAGAGAAAAAGAGTTGGTAATTGAACCTGTGATTCGGTGGGCCAGCATAGCAAATGTAATTGTGAAAGTGAAGGTGCATTCTTTCCAAGTGTCGGCTCAGCTTTTAGATTTACATATAATGCTGACACCACGTGTGACTCTGAAGCCTCTTGTGCCAAGCTTTCCCTGCTTTGCAAACTTGTGTGTTTCACTGATGGAGAAGCCACATATCGACTTTGGATTCAAATTGTTGGGTGGAGATGTCATGGCAATACCTGGCTTGCATCGGTTTGTCCGGGAGAAAATATCAAAGCAAATCGCAAACTTGTATCACTGGCCTAAGCTTATACAAATTCCTATTTTAGATGAAGCGAGTGGTGCGACAAAGAAACCAGTTGGAATATTACATGTAAAGGTAATTCGAGCCATGAATCTTCTCAAGATGGACTTGCTTGGAAAATCTGATCCCTATGTCAAGCTCCGTTTGAGTGGTGAGAAACTGCCTTCAAAGAAGACGTCTATTAAGATGAGCAACCTGAATCCTGAGTGGAATGAACACTTCAGATTTATAGTCAAGGATCCTGAAACACAAATCCTTGAGCTCCGCATGTTTGATTGGGAAAAGGTTAAAATGCATGATAAACTGGGTATGCAAGTAGTTCCCCTCCGCTTGCTTACTCCTTATGAGAGTAAACTGTTCACACTTGACCTTCTGAAAAGCATGGACCCAAATGATCCTCATAACAAGAAGAACAGAGGAAAGCTTGTCGTAGAGCTGACATTTGATCCCTTCAGAGATGACAGCAACAGTACCATTCTGATGTCAGATGGTGAAGGCAATGTCAGTGTAAAAAGGGACGTCCCACCCAGTGGAGGGTTGCTGTTGGTTTCAGTAGAAAATGCAAAAGACGTCGAGGGAAAGCGTCATACTAATCCGTATGCCGTGGTTCATTTTAGGGGAGAAAGGAAGGAAACGAAGATAATCAAGAAAACAAGAGATCCAAGATGGAACGAAGAGTTTCAGTTCATGGTTGATGAGGCTCCTGTGGATGATAAGATCCACATCGAAGTAGTAAGCAAACGCCGTGGGCTCCGGCTTCCCTTCCGCAATAAGGAATCATTGGGGCATGTGGATATAAACCTAGTGGACGTCGTGAACAACGGACGGATCAACGAAAAATACCATCTGATCAACTCGAGGAACGGGATGGTACACGTCGAGATGAAATGGAGCACTGTATGA</cdnaseq>

Protein Sequence

<aaseq>MGLVGGLLGFGVGLPLGIAVAYLVYLRLFAPRRRLQDPIIRPLRDLDSETLQTTIPDIPLWMKCPDYERVDWINKFIFDMWPFLDKAICNTIRSVIRPTFDQYVGQYGIKSIEFGHLTLGALPPTFQGIKVYEMREKELVIEPVIRWASIANVIVKVKVHSFQVSAQLLDLHIMLTPRVTLKPLVPSFPCFANLCVSLMEKPHIDFGFKLLGGDVMAIPGLHRFVREKISKQIANLYHWPKLIQIPILDEASGATKKPVGILHVKVIRAMNLLKMDLLGKSDPYVKLRLSGEKLPSKKTSIKMSNLNPEWNEHFRFIVKDPETQILELRMFDWEKVKMHDKLGMQVVPLRLLTPYESKLFTLDLLKSMDPNDPHNKKNRGKLVVELTFDPFRDDSNSTILMSDGEGNVSVKRDVPPSGGLLLVSVENAKDVEGKRHTNPYAVVHFRGERKETKIIKKTRDPRWNEEFQFMVDEAPVDDKIHIEVVSKRRGLRLPFRNKESLGHVDINLVDVVNNGRINEKYHLINSRNGMVHVEMKWSTV</aaseq>

Gene Sequence

<dnaseqindica>1..108#1478..1576#2280..2330#2486..2609#2857..2975#3046..3147#3216..3290#3482..3558#4012..4261#4403..4756#4899..5033#5190..5318#ATGGGGCTCGTCGGTGGCCTCCTCGGCTTCGGCGTCGGCCTCCCCCTCGGCATCGCCGTCGCCTACCTCGTCTACCTCCGCTTGTTCGCCCCTCGCCGCCGTCTCCAGGTCAGTCCATCCATCGCCTCCTTCCTTCTCGATCCTTCCCGTCCTGTACTAATCCTAGCAATTTAGTGGTAAGTTGAACGCATTCATCGTTAGCAATTCGTTATCTGTGTACTGTCACTTTGTTGATTTGTGTGCGGTTTATCATATCAAAATTACTCATGAACAGCAGCAGGATGGATTTCGATCGAGGTTTTGTGCACACCAACTAACCCAACAAAATGGTTGTAGAAATTAAATCCGAGATTGGGACGTGCTTGATTTCTTCTGCCCGTACGATTAGACTACCGGATTGTTCAGGATGCGACGTGGGGAAAACGGGACGTGGTACGTGTGCTCCAAAGTCCTTGTCTTCCCCTGCTGGAGTAGTGCCATTTCTCAGCTCTGACTAAGCACGTCTCTTTACCAGTTTCGCCGTCCAGTACTCACTTTTCAGTTCCAGCTTTGAACAGCTTTGCTTTGCTAGCTTGCGTATCCGATTCCGGCTTGCCAATTGCGATGCCTCCGTGAGCTGACATATGCTTCCTTAGTGAGATTGTTTCAATAAAATTGACTAATTTCGATGCGCCAGCTAGACACTGGGGATTTTATTAGATTGCGATATATTGATGTGTACTGGGGGAGTTTGCTTGGGATTATTTGGGACAAGTGGGATTGCTATGGGATTACTGAACGAATATTCCAAATACATGAAAAACACAAGATGTATTTTATATGCATCTGTTAATTAATTTGGTTTAGCAATGTGAAATGGGTTGGTGCATATGAATACAGAATATTTTGTAGTGCACGGCGTGTTATTTAATTAGCCTAGTAGTACATATGATATTTGTCTGATATGGTTAGAATCATTTCAGCTAGTTACAGGGTGGGTTAGCCCATTGGAATGAGAACGACATGGTTAGATGCGACAGAGCAAAAATCCAACTTGGTTATTTGCTTAATGTATATAGCCTACTCCGATGCACCCTTTTATGTTGAGACTAACGAAAATTGGATTACTTACTTCATAAGAAAAGAAATAATCAAATCCACTATGCTAAGTAAAAGAAAAGTCATAACCACCAGTGTTTGGTGACATTAATCTGACTGAAAGTCAAGTTGGATATCCACTATTTCACTTTGCAACCAATGGTCAATACTGGATGGAGCTGTATAAGCATTTTCAACCTGCCCCTCCAGGGTCCAGAAAACTATGGTAGATTCAGACGGTTTGATCCTCTTGAGCTCCACTGCTTTACTTCATACTACTATCAAGCAGGGTTCAACATAAATTAATATTCAAAATCTTACACAAACCCAAATAGTAAATACTATAGTACAAATTTGATCTCAACATTTTTTGAGGGAAACTGACTGTTGACTTTTGCAGGATCCTATTATTAGACCACTACGTGACTTGGATTCTGAGACATTACAGACAACTATACCAGATATTCCGTTGTGGATGAAGTGTCCAGATTATGAACGGGTGGGTATATAAACATGGCGCGCTACTATTTAAACGACTTATAATTTGTTGCTTTGGGATTATGTGTGTCGTAAATCAATCTCTGTTTAGTTGTCAAATGTCAACAGTACAACAAGGCGTGAGCATTCATGATAATATAGAAGTATGTATAACAGGCCCCTGAGTAACATGAGTGTAGGATATTATATATGGAGTCTTTGTAACTTTTATGGAAATTTAATTATCTTAGCATCTTTGTATTTCCCATGAAAAGAAAAAAAAATTAGAATACACCTTCACATATCAACAATTTATTTGGAAATCTTTTGGTTATCCCCTTTTCAGAGTATTTCTTTTTTTTAAAAAAAATATTTCATATAGAGATAAATACAATATGTTAATACCAAAATTTGACAAATGAAATTAGAGAGGATTACGCTGTTGGTGGTGACAGCTTCCATTATCATAATCTATTGTAGGATTCCATTTCTTTTAGCTTAGCAATCTGGTCAAGAAATCATATTGATCGGTATGATAAATTGCTAAATAGCCAAGCTCTTGAGGACTGAGGCACATATATGAGAGAATGTGTGCTGGTACTTTGTATTTATTTTTGCGTTCTTGTTTCTTTTTATCCACACCATAAATGCTACATTACATATAGTTCATTTAAAGACACAATACTCAATTCATGAAATGGAGAATTCATTTTATGTTTTTGCAGGTTGACTGGATTAACAAGTTTATTTTTGATATGTGGCCCTTCCTTGATAAGGTATTTTCAAGTCTCATATGGCCTGTTTGCTACCAAGTTTTAGTGTAATATTCAGTGCTTCATCATCTGAGCGTTGAGAGTTCTTCTCGAACCATTGTCAGCTTGGGTAATTCAATTGATTCATTTTTTTAAGACTCAATTGACTCATTGATCAGGCAATCTGCAACACAATAAGAAGTGTAATCAGACCAACATTTGATCAATATGTTGGACAATATGGAATAAAATCAATTGAATTTGGGCACTTAACACTTGGGGCTCTTCCTCCTACGTTCCAAGGTCTGTTGATTTCTGTAAGAGTACTTTCTGTAATGATGCAATTTGTTCAGTGACACAGACCTTATATCCTCAAATCATGATTATCATTATAAGTACAGTGTTTCTGTATCCTTGTATAACTCAAGTCTATGTTGTAAATAATATAGATTGGTAGAGCAGTTCAAAATCTGTAGTCTGCACTTACGCTGTCAGTCAACTCTTGTTAAGATTGATTGATTCTTATACTACTCGATATTTTGACAAGCAGGAATTAAAGTTTATGAAATGAGAGAAAAAGAGTTGGTAATTGAACCTGTGATTCGGTGGGCCAGCATAGCAAATGTAATTGTGAAAGTGAAGGTGCATTCTTTCCAAGTGTCGGCTCAGGTTAGCTTTCTCTTATCTCGTTCTAAAGAATGGACTATTAGTCCTCTGACTGATCATATTTCTGTTTCAGCTTTTAGATTTACATATAATGCTGACACCACGTGTGACTCTGAAGCCTCTTGTGCCAAGCTTTCCCTGCTTTGCAAACTTGTGTGTTTCACTGATGGAGAAGGTATTAATCTGTTTCTTCAATGTTAAAACAACTCTGTAAATAAAACTAACTCTTATTTTATTATAAAGCCACATATCGACTTTGGATTCAAATTGTTGGGTGGAGATGTCATGGCAATACCTGGCTTGCATCGGTTTGTCCGGGTAACTAATTTTCTCTTTAACATTTATATTCCCACAGAGGACACTGAATTTGAACGTCCTGATGGACTCTTGTAGTTTAATTGTACCCAATTAATTACTACTACGATTCCTTATTTCACTATCTTGGGTACCAGTACTATGTTCCTAGCTTGTGGACTTCTTAATTATTAGTGGTTTTTGCTTTCTGACAGGAGAAAATATCAAAGCAAATCGCAAACTTGTATCACTGGCCTAAGCTTATACAAATTCCTATTTTAGATGAAGCGAGGTGATTTTCTTTACAAATGACATCCATATTTTTTTTATTGTAAGGATCACAATGAGAAGTTGTTGGATGAGTTTATTAATTCCAAATTTGCATGCCGAGTTGCATATGTCTATCCTGTCTTCATCTTGATAATCTTCTATCTCGAGTATATTCTCATTCAACATGAACTTTTTGAGACATATATTGCCAAGATAATTTGGAAATAAGAGTCTCCCAGAAAACATATTAGCATCAATAAACATTGCTATCCTTGGACCCGTTTAAAAAGGAAGTGCATTTGTACGTGGCGAAGGAAATTAAATGTTGGGAAAAACATAATTTTGTTATTCATTTAGTGCAAAAGAAATAACATTGCTAATGGGGCTTCTATAGCTGAAACAAGGTTGTTTTAGTTTTGAATGTACTCCAGTTTAATTTGATCTTTCTCATATTACCGGTGTGGAACATTTGCAGTGGTGCGACAAAGAAACCAGTTGGAATATTACATGTAAAGGTAATTCGAGCCATGAATCTTCTCAAGATGGACTTGCTTGGAAAATCTGATCCCTATGTCAAGCTCCGTTTGAGTGGTGAGAAACTGCCTTCAAAGAAGACGTCTATTAAGATGAGCAACCTGAATCCTGAGTGGAATGAACACTTCAGATTTATAGTCAAGGATCCTGAAACACAAATCCTTGAGCTCCGCATGTTTGATTGGGAAAAGGTTTAGCTTTGCTGTATGCAACTTTTCTTCTGATAAGTTGGTTTGTCATTTGTAAGAGCAGTAATTGTTATTTCTATGCTCTTTTCCTGCTTGGCATAGGTAGGAAATAACAATAACCTTTTCCTTTTTCTGTTTGTGCAGGTTAAAATGCATGATAAACTGGGTATGCAAGTAGTTCCCCTCCGCTTGCTTACTCCTTATGAGAGTAAACTGTTCACACTTGACCTTCTGAAAAGCATGGACCCAAATGATCCTCATAACAAGAAGAACAGAGGAAAGCTTGTCGTAGAGCTGACATTTGATCCCTTCAGAGATGACAGCAACAGTACCATTCTGATGTCAGATGGTGAAGGCAATGTCAGTGTAAAAAGGGACGTCCCACCCAGTGGAGGGTTGCTGTTGGTTTCAGTAGAAAATGCAAAAGACGTCGAGGGAAAGCGTCATACTAATCCGTATGCCGTGGTTCATTTTAGGGGAGAAAGGAAGGAAACGAAGGTATTTTATTTTTGGAATTAGTTTTGCCACACTAACTTTATGTTGTAGTTCCACGTTATACCCCAACTAAAAGCGCTTAAGAACATAGTAGTACTACCTAATACTTTAATGTGAACCTAAAATGTTTAACTTGGCATTTCAGATAATCAAGAAAACAAGAGATCCAAGATGGAACGAAGAGTTTCAGTTCATGGTTGATGAGGCTCCTGTGGATGATAAGATCCACATCGAAGTAGTAAGCAAACGCCGTGGGCTCCGGCTTCCCTTCCGCAATAAGGTCAGTCAGTCACTGTTGTTACCTGCTGATTGCAAAACCATCTCTTCTGATAATGATATTCACAACCAGTTGTTAAAAAAAAAACAGAGAGAATATAATCACATCCAGTTCATAGTGCCTTCTAAAATCAACCTCTCATTTCTCCGAAAATTTCAGGAATCATTGGGGCATGTGGATATAAACCTAGTGGACGTCGTGAACAACGGACGGATCAACGAAAAATACCATCTGATCAACTCGAGGAACGGGATGGTACACGTCGAGATGAAATGGAGCACTGTATGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA023489