Os06g0142900

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Revision as of 09:03, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0142900| Description = Deoxyxylulose-5-phosphate synthase family protein| Version = NM_001063308.2 GI:297605161 GeneID:4340090| Length = 55...")
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Gene Name

Os06g0142900

Description

Deoxyxylulose-5-phosphate synthase family protein

Version

NM_001063308.2 GI:297605161 GeneID:4340090

Length

5596 bp

Definition

Oryza sativa Japonica Group Os06g0142900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:2250032..2255627

Sequence Coding Region

2250638..2250640,2250801..2251085,2251298..2251576,2251826..2252130,2252590..2252869
,2253218..2253486,2254031..2254181,2254303..2254419

Expression

GEO Profiles:Os06g0142900

Genome Context

<gbrowseImage1> name=NC_008399:2250032..2255627 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:2250032..2255627 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgaggaaatgccaaccatgtaacactggacattctgttgtggagctcgctattgctatacattatgtcttcaatgccccaatggataagatattatgggatgctggtcagcatacatatgcacacaagattctcacaggaaggcgctcactctttcatactattaagcaaagaaaggggctttcaggtttcacatcccgtttcgagagcgaatatgatccctttggtgcaggacatggatgcaatagtctctccgcaggccttgggatggcagtcgcaagggatctaggtgggaggaaaaaccgaatagtaacagttataagtaactggacaactatggctggtcaggtgtatgaggcaatgggtcatgccggtttccttgattctaacatggtagtgattttaaatgacagccggcacaccttgcttcctaaagcagatagccaatcaaagatgtctattaatgccctctctagtgctctgagcaaggttcaatccagcaaaggatttagaaagtttagggaggctgcaaagggactttccaaatggtttggtaaagggatgcatgaatttgctgccaaaattgatgagtatgcccgtggtatgataggtcctcatggagcaactctttttgaagaacttggattatattatattgggcctattgatgggaataacattgatgatctcatttgtgtactcaaggaggtttctactctagattctaccggcccagtacttgtgcatgtaatcactgagaatgaaaaagactcaggtggagaatttaatagtgagattactcccgacgaggaagggcctccagactcaagccaagacattctaaagtttttagaaaatggtctttctaggacatataatgattgctttgtagaatcactaatagcagaagcagagaatgacaagcatattgtggtggttcatggaggcatgggaatagatcgatcaatccaattatttcagtccagatttccggacagatttttcgatttgggtatcgccgagcaacatgctgttacgttttctgctggtttggcatgcggaggcttaaagcctttctgcataattccatccacctttctccagcgagcatatgatcagatagtcgaagatgtggacatgcaaaagataccagttcgctttgcaatcacaagtgcaggtctggtgggatctgaaggcccgactaactcaggaccatttgatattacattcatgtcatgcctgccaaacatgatcgtcatgtcaccatctaatgaggatgaacttattgacatggtggcaacagctgcaatggttgaggacagacccatttgcttccggtatcccaagggtgccatcgttgggactagtggcactttagcatatgggaatccacttgagattggtaaaggagagattcttgctgaggggaaagagatagcttttcttggttatggtgatgtggtccagagatgcttgatagctcgatctcttctgttcaactttggcatccaggcaactgttgctaatgcgagattttgcaagccacttgacattgatctgataagaatgttgtgccagcaacacgatttcctaatcaccgtggaagaaggaacggttggtggttttggctcacacgtctcgcaatttatttcactcgatgggttgcttgatggcaaaataaagtga</cdnaseq>

Protein Sequence

<aaseq>MSRKCQPCNTGHSVVELAIAIHYVFNAPMDKILWDAGQHTYAHK ILTGRRSLFHTIKQRKGLSGFTSRFESEYDPFGAGHGCNSLSAGLGMAVARDLGGRKN RIVTVISNWTTMAGQVYEAMGHAGFLDSNMVVILNDSRHTLLPKADSQSKMSINALSS ALSKVQSSKGFRKFREAAKGLSKWFGKGMHEFAAKIDEYARGMIGPHGATLFEELGLY YIGPIDGNNIDDLICVLKEVSTLDSTGPVLVHVITENEKDSGGEFNSEITPDEEGPPD SSQDILKFLENGLSRTYNDCFVESLIAEAENDKHIVVVHGGMGIDRSIQLFQSRFPDR FFDLGIAEQHAVTFSAGLACGGLKPFCIIPSTFLQRAYDQIVEDVDMQKIPVRFAITS AGLVGSEGPTNSGPFDITFMSCLPNMIVMSPSNEDELIDMVATAAMVEDRPICFRYPK GAIVGTSGTLAYGNPLEIGKGEILAEGKEIAFLGYGDVVQRCLIARSLLFNFGIQATV ANARFCKPLDIDLIRMLCQQHDFLITVEEGTVGGFGSHVSQFISLDGLLDGKIK</aaseq>

Gene Sequence

<dnaseqindica>4988..4990#4543..4827#4052..4330#3498..3802#2759..3038#2142..2410#1447..1597#1209..1325#gtcatgtcaagagcgcagaggagcactccgcgtcccaaatcccaaaccggagctagggttgctgctgctgccactcgcgagcagcagcgccccctcacgctgagccgcctccggctccctcgccgccgatcctgcgcgtgcggcggcggcgggtggccggtttgaaggaggagaggaggtaacggtagatgggttcttggttttcttttgccccccgcggctatttcggtttctagtggaagctggttgcctgtggtgtaaattggggattacggattttggccgtctgattctccattttagctgtccctggatggatagatgagtttgctgtttgtagctgattcttggtgtggtgtcattccaaggactgatacttgattgtgtgctcatcttcatctagaacactgaaaacatatgtggataattgtttatgatgaatttaggatccagtgatctctccatgtttatttttagaaaaaaaataagtttctcacaggctaaagaatactgtaaatttcaggcttttggtcgtcactccttgcgcaggatgggtgggagatatctgcattctccacctgctgttaatttaatctgtgaggaatcaacttttgtgcgctcaacaagttgctgtctccactcttgtctgtgtttgagatgcaaaacatcgaatttgaagccatgtcgaacactggtgttcaatatgccatcaagggtatgttctttctccatatctgcagtacactgtgcagacaaggctaacattttagcttcagggtagatatttagtcccacaaagaataaaagaatgaagtacattgtgtgagctttagtcgcagcctgccagaatttgataactatttcactagggatacatttgtggccggagaaggactctgaactttgtagtctcatactcacagatggtgaatgttctctctttttgtacagcgcttcaatagaagagtggctgcgctgccagatgtcgatgatttcttttgggagaaggatccaactccaatcctggacacgatcgatgcacccatccatttgaaaaatctatctagtaaggtcgtcagtcatactatcttaagcatagtagcatactctctaactatgttatggctgaggaatttttgacaattcccattgaaagacaggagttaaagcaactagctggtgaagttcgatcggagatatctttcataatgtcgaggaaatgccaaccatgtaacactggacattctgttgtggagctcgctattgctatacattatgtcttcaatgccccaatggataagatattatgggatgctggtcagcatgtatgatccctctatctttttgttttgtgctaagattttgcctccagtaagctatcatataccatttcatataatcggaaatgttttaccttttgtgttcaatattttttctcatctgcagacatatgcacacaagattctcacaggaaggcgctcactctttcatactattaagcaaagaaaggggctttcaggtttcacatcccgtttcgagagcgaatatgatccctttggtgcaggacatggatgcaatagtctctccgcaggccttggtatatatagtgttgcctctgttaaatgttaatacattaattcatgccttgcacttcaagaactgcttgctttgttgttagacctctccttctatttaaatggatttccttaagatattgatttcattgtgtttggaatccgtacaatattccatagtttttttcatcttcgactccgattagcttccatgcattttatcaatagttcagctacctgaaacagagaaaaacagtgcttcttgctttttaaaccaaggtatacagtgccgggatgtacgactcaaaatataattcaagaaatataatataagttctgatgtattcaagttcatatccttctggtgtggtatcagcagtcatgatatgaaattcttaaactatcttattttgctaatggagttaataatcattatagaagtttgcatagtctattagaatcctaagtatgtttctacatttaatcatgaatctcctgatgttttattcttttatgtcaaatgatttccttttattcgtttatagcttgaaaatgatctcttgtcagggatggcagtcgcaagggatctaggtgggaggaaaaaccgaatagtaacagttataagtaactggacaactatggctggtcaggtgtatgaggcaatgggtcatgccggtttccttgattctaacatggtagtgattttaaatgacagccggcacaccttgcttcctaaagcagatagccaatcaaagatgtctattaatgccctctctagtgctctgagcaaggttcaatccagcaaaggatttagaaagtttagggaggctgcaaaggtaaaactttatgcttctgtatgacataatgtactagatttgaacttgctaataaaacatagttttttttaactgtcctgttatttcctgattatgattatagtatagacatatagtttctagttgattgtttcttttcagttctcttttttatctggtagtgacaaatgtacttgttactttcaacttattgttataaaagcctgctaattgacttgctgctgtacatattatgatgaaaaatttccaggaagttttggcatgggttgtctttctactttcttaataacaacagtcttgcactgccttgagtttcctgctttgatacgaattttgtttcctttctagggactttccaaatggtttggtaaagggatgcatgaatttgctgccaaaattgatgagtatgcccgtggtatgataggtcctcatggagcaactctttttgaagaacttggattatattatattgggcctattgatgggaataacattgatgatctcatttgtgtactcaaggaggtttctactctagattctaccggcccagtacttgtgcatgtaatcactgagaatgaaaaagactcaggtggagaatttaatagtgagattactcccgacgaggaaggtgtgcaattacaaattgtcaacgaaattttctgcaatcctatgaatatgatagcgtacattctgctttctctgttttctcattttacattctggatgtcttgctttgatattaatacagagagataagtgaagcaccacagcatgaatttgaggaaggaaacagcgcgataaggatttgtttgagtggcaatatgcatgtgaatgttgtatttgtttgaaaaatgatagaacacactactgaaatttcaaatgaaatatgtgaatcggttctcacctgtagaatcattcacaattcacaacattcaggaactttaaggtttcacatatcagttatgttaaatattacatgtataagtcaactatcctttgagatccttcctacatgtctttgcacaatcaaatcatataggatactaaaatgaatctataatttattaacttttttctctgctaacagggcctccagactcaagccaagacattctaaagtttttagaaaatggtctttctaggacatataatgattgctttgtagaatcactaatagcagaagcagagaatgacaagcatattgtggtggttcatggaggcatgggaatagatcgatcaatccaattatttcagtccagatttccggacagatttttcgatttgggtatcgccgagcaacatgctgttacgttttctgctggtttggcatgcggaggcttaaagcctttctgcataattccatccacctttctccagcgagcatatgatcaggtgccctttgctcccatctccccatgtattcctcctctctaactgtactccatatttgctctgctacatggttgaaacaatcattagtaggctttgtaagccatcttccaaattttcatgtactacaataaaatagttgaaacaagcatagtttctgtaatagtgggctatagactaaagctccacttaatctgtatggctgctttactgcaagtacttcgcatttgataaagctcacatatatgccagatagtcgaagatgtggacatgcaaaagataccagttcgctttgcaatcacaagtgcaggtctggtgggatctgaaggcccgactaactcaggaccatttgatattacattcatgtcatgcctgccaaacatgatcgtcatgtcaccatctaatgaggatgaacttattgacatggtggcaacagctgcaatggttgaggacagacccatttgcttccggtatcccaagggtgccatcgttgggactagtggcactttagcatatgggaatccacttgaggtagctctacttcaatttctttttttgattctaagcagaagtcacttggaaaatagtacagcttgaaagctatcagttacgctaatgctgggattcatgcccacctaaaagctggtgttctttggtgaactgaaaaaaacaagctggcaatacctttgtgcgcttaaacattttgcatgctgttcttattagttttggggactctctttcagattggtaaaggagagattcttgctgaggggaaagagatagcttttcttggttatggtgatgtggtccagagatgcttgatagctcgatctcttctgttcaactttggcatccaggcaactgttgctaatgcgagattttgcaagccacttgacattgatctgataagaatgttgtgccagcaacacgatttcctaatcaccgtggaagaaggaacggttggtggttttggctcacacgtctcgcaatttatttcactcgatgggttgcttgatggcaaaataaaggtaagaatttaaactcttacacggattttaactcctgttatctagtataaatccatccaatattcttgcaagttgcaatggagcttcacccttttgtattgcaatatgccacttgccttgtgctccattcatgttttgtataaatgataatttcaaacagtgactttctgttaacttgcagtggcgacccattgtactaccagacaggtacatcgaacacgcttcgctcacagagcagctcgacatggctgggttgactgctcatcacatcgcagcaaccgcactgacccttttagggcgacaccgagacgcacttttgttgatgaagtaagaaggaaaaatgagctagaaaagaatgaaaagttgtgcagcaagtttgagctggtagaagacagccaaattgctgtttcatggatattcttcagtctttcagaggaaactgagattgccatggcagatacagcctgtgtgcaccactgaaagagcttgcaagtttttatctgtgctccagatgcttactgtaatctgttcatgggggctgtacatactataaaccctgttttgatgatgattatgttaaaccctatcaagtgcttgtaacaggaaggggataatcatcttgctgatgtaaatactcgaggaataaatgtgctgtgtgtgtgtgtgtatgactccaagtgaagagagagctgtgtctaaattgtaatcgagtaacccttcagaactttggatgcagtgaatcctctctgaatgagatcataaaatgttg</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0142900, RefSeq:Os06g0142900