Os06g0143400

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Revision as of 09:03, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0143400| Description = Similar to Acyl-ACP thioesterase (Fragment)| Version = NM_001063311.1 GI:115466353 GeneID:4340093| Length = 4800 bp|...")
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Gene Name

Os06g0143400

Description

Similar to Acyl-ACP thioesterase (Fragment)

Version

NM_001063311.1 GI:115466353 GeneID:4340093

Length

4800 bp

Definition

Oryza sativa Japonica Group Os06g0143400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:2273709..2278508

Sequence Coding Region

2274851..2275363,2275464..2275597,2276837..2276950,2277055..2277241,2277335..2277403
,2277579..2277845

Expression

GEO Profiles:Os06g0143400

Genome Context

<gbrowseImage1> name=NC_008399:2273709..2278508 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:2273709..2278508 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctggttctcttgcggcgtctgcattcttccctgtcccagggtcttcccctgcagcttcggctagaagctctaagaacacaaccggtgaattgccagagaatttgagtgtccgcggaatcgtcgcgaagcctaatccgtctccaggggccatgcaagtcaaggcgcaggcgcaagcccttcctaaggttaatggaaccaaggttaacctgaagactacaagcccagacaaggaggatataataccgtacactgctccgaagacattctataaccaattgccagactggagcatgcttcttgcagctgtcacgaccattttcctggcagctgagaagcagtggactctgcttgactggaagccgaagaagcctgacatgctggctgacacattcggctttggtaggatcatccaagacgggctggtgtttaggcaaaacttcttgattcggtcctacgagattggtgctgatcgtacagcttctattgagacattaatgaatcatttacaggaaacagctctgaaccatgtgaaaactgctggtctcttaggtgatggttttggtgctacgccggagatgagcaaacggaacttaatatgggttgtcagcaaaattcagcttcttgttgagcgatacccatcatggggagatatggtccaagttgacacatgggtagctgctgctggcaaaaatggcatgcgtcgagattggcatgttcgggactacaactctggtcaaacaatcttgagggctacaagtgtttgggtgatgatgaataagaacactagaagactttcaaaaatgccagatgaagttagagctgaaataggcccgtatttcaatggccgttctgctatatcagaggagcagggtgaaaagttgcctaagccagggaccacatttgatggcgctgctaccaaacaattcacaagaaaagggcttactccgaagtggagtgaccttgatgtcaaccagcatgtgaacaatgtgaagtatattggttggatacttgagagtgctccaatttcgatactggagaagcacgagcttgcaagcatgaccttggattacaggaaggagtgtggccgtgacagtgtgcttcagtcgcttaccgctgtttcaggtgaatgcgatgatggcaacacagaatcctccatccagtgtgaccatctgcttcagctggagtccggagcagacattgtgaaggctcacacagagtggcgaccgaagcgagctcagggcgaggggaacatgggctttttcccagctgagagtgcatga</cdnaseq>

Protein Sequence

<aaseq>MAGSLAASAFFPVPGSSPAASARSSKNTTGELPENLSVRGIVAK PNPSPGAMQVKAQAQALPKVNGTKVNLKTTSPDKEDIIPYTAPKTFYNQLPDWSMLLA AVTTIFLAAEKQWTLLDWKPKKPDMLADTFGFGRIIQDGLVFRQNFLIRSYEIGADRT ASIETLMNHLQETALNHVKTAGLLGDGFGATPEMSKRNLIWVVSKIQLLVERYPSWGD MVQVDTWVAAAGKNGMRRDWHVRDYNSGQTILRATSVWVMMNKNTRRLSKMPDEVRAE IGPYFNGRSAISEEQGEKLPKPGTTFDGAATKQFTRKGLTPKWSDLDVNQHVNNVKYI GWILESAPISILEKHELASMTLDYRKECGRDSVLQSLTAVSGECDDGNTESSIQCDHL LQLESGADIVKAHTEWRPKRAQGEGNMGFFPAESA</aaseq>

Gene Sequence

<dnaseqindica>1143..1655#1756..1889#3129..3242#3347..3533#3627..3695#3871..4137#gagttggcgagcccgaggagcggaggcggccacaagtctaatccgcgtcgtctgcgcgttcgtgggcgaggaggagaaagaagaggaggaagagagggaagggggcttgatttgatttgggcgcgtctcgtggagtatccggtgagttcttggcgatctggcgaggcgagtgatgagtgattcctgctgctgctgggggattttggcgtgattttcgttggttgcattttgtttctttttttttgtatcgatttgttggagctttattcggtagatctggtcgattccatggtgagttgtatcggcgccggagtgatagctgattctgtttttttgtgtgattttttttttgttttggaaatagggtttgtgtcgaattgagggcattttttttccttaggcaatgcaggatttcgttttgtatgtttttgcgtggaatggatatgaacagacctcgaacaaatggaagaatttgtattttgtatgatggattgcaatgcgatacttgttttggggcgtgattcgattgaaataaatgaaatattagagttattttgggattcctgtttgctgcgcctttttttttagcatttcttgatatgaacaagagaagaagggctgaatttttttcttagctttggaggcatttactgtcccagtattttctcctaccggaagcagaatattttgtttgattggagggttgcctccctttgccaaattgaatcaaatgttctcggatgttttaaaatttccgtggactctttttgccccaggggagaccgcttttagcagctggatcccgtgttttcatttcaagttcttgttttcctagtctccatatatttctgattgttaactcgtattctctacctcacatatgcaaaatcacacttgcgtcgttctgtaattagttagattctgcaagaaaaatccggaattttcaagcatgctagtagttttaaattgatgccatgttttttagacaatgttaattgatgccatatgactataggacacattatattgcgtttctgaatataccacctcatgaaactcataattttgttgattaattgttcaggttgccccttctagtgtgtaacttggagcaaatttggaccctgagacgcaaatcagtcatggctggttctcttgcggcgtctgcattcttccctgtcccagggtcttcccctgcagcttcggctagaagctctaagaacacaaccggtgaattgccagagaatttgagtgtccgcggaatcgtcgcgaagcctaatccgtctccaggggccatgcaagtcaaggcgcaggcgcaagcccttcctaaggttaatggaaccaaggttaacctgaagactacaagcccagacaaggaggatataataccgtacactgctccgaagacattctataaccaattgccagactggagcatgcttcttgcagctgtcacgaccattttcctggcagctgagaagcagtggactctgcttgactggaagccgaagaagcctgacatgctggctgacacattcggctttggtaggatcatccaagacgggctggtgtttaggcaaaacttcttgattcggtcctacgagattggtgctgatcgtacagcttctattgagacattaatgaatcatttacaggtgatacaatggagctatgctgctttagcttttcttccgtatttttcactattggtacattatgttcgtggcatactaactgtaatttgaagctttgcaggaaacagctctgaaccatgtgaaaactgctggtctcttaggtgatggttttggtgctacgccggagatgagcaaacggaacttaatatgggttgtcagcaaaattcagcttcttgttgagcgatacccatcatggtactttttctgcaatccactactctccacatcattttcttggatggcaaaacttctctttttactcttaattcataacatttctttcattcttaatggagtacttttgtccccggtgcatttagtgtcacaatttaatgtttacatggtacgggaaagatttatcactcaatatccacggtgtaatgtttttagctaaactcaatatccacggtgtaatgtttttagctaaacttgtcttcagtccttttttcctttttccctatgtttgtgtgctgtggcattcgatggatcatcgagactctgagtagacgtagattcttgcattccttatgcgacatgaggcacatgttcgagtgtttatcaccctacatgaaaacctttccctactaagttgctgcttctattgttctgcagatataagcaatatttttgcctatttttcctgtgctttgaacttctcgtaggttcatggcccacaacctttagcaggcatagtgccttgaaatggagtattacactcaaaagcataacaataacatgtattgccttgtatgataagatgagtgatagatcttttgaaatcatttactgaggaaaacgtttgtttatttgacaagacaatgtattgatgaactagaactgctctattaagtggtatctgccctgtgtctcctttcgtacaaattgttgcacccctgttcatgttacttctcacttttcaccatggcaggcatgtttagaaaatcatttgattttacagggcattaccatgtgaccccttaataactaacaaatatattttgggtccaccaaatctgtggtggatggaaagggaaattaataaacacaaatggaaaattcttcattgtgaaacgtgataaggacaaattttgtgaataaataaagtaacaaaaaatggctagtatttgcctacatatagagtacacctcaagagatcagaaaagttgcctttattgatggagtaattgaattagtagtaagcaataaattctgtggacctaggggacatccctgatctagatcgagttttgatctcatgctacatttaatcttccatgtcagcaactttcagtacctgctattaaatttcccctgttcttctgacgattgatgcaattttaagtttatgagaaggaaaacggtctgctgtttttgaattctgaatgtagtttacacaatttctcataggctgaaattttggttgcaaatttttaggggagatatggtccaagttgacacatgggtagctgctgctggcaaaaatggcatgcgtcgagattggcatgttcgggactacaactctggtcaaacaatcttgagggctacaaggtttgtgtttatcgtttgcatttgttgcatttcttttgtttcatgctgtttaccagcatgttttattccttttcgattgctaattgttcctctcttgtttgcagtgtttgggtgatgatgaataagaacactagaagactttcaaaaatgccagatgaagttagagctgaaataggcccgtatttcaatggccgttctgctatatcagaggagcagggtgaaaagttgcctaagccagggaccacatttgatggcgctgctaccaaacaattcacaagaaaagggcttactgtaagtcagttaatattgcttgttaccgtcattcattttgctggtggttctcatgcataaaatttctcatgagggatcctttgttcatgtcagccgaagtggagtgaccttgatgtcaaccagcatgtgaacaatgtgaagtatattggttggatacttgaggtaacttctttttccttttctctatccgaacatgctatctctagatcagaaaagagagtgtctgatcgtaattagtaacctagttcctagtcatatgccaagctgtaaaaacacttgcactgtatattcaaaagctattcaaatttctgagtacgttttgtttttttttcctcagagtgctccaatttcgatactggagaagcacgagcttgcaagcatgaccttggattacaggaaggagtgtggccgtgacagtgtgcttcagtcgcttaccgctgtttcaggtgaatgcgatgatggcaacacagaatcctccatccagtgtgaccatctgcttcagctggagtccggagcagacattgtgaaggctcacacagagtggcgaccgaagcgagctcagggcgaggggaacatgggctttttcccagctgagagtgcatgagcgcttctgtagtttatccggcaagtaacctctttgagaagtgcagattctaacttggctagcaacacaggacaaatgattgttggtgggaaatttggcatgccgagcctgggttttgtgatgcacacagcacacattcagatttgaagattgagagatgcttcttattggcagcttgttcagaaagatgactaagcggtttgggataaaatcagctgattgggaaacattagcaggatgataagcatgactggtggtaccaatgaaaagggttgaaatcctttgcattgttcatttgttgtggagcaagagtggccgcagttgcttatcacacaggatgatggaggtgtttgtgtgaagcttattgctgaagctggattgtttttgacctgtgtttctaaaagaaaagggaaaagaagaagctgtggattgaggccggagcagcagagatattacaatcgacatagataaataagatgtaatactaatttagcccaggtggtttgtgtgtggagatgcaatccattgtagtaacagcctaacttgtacattcttgccatctttttcttattaattgaatgaatgaatcgcagacctcctgcgttttcatcaataattgaaatgacttctgcttcatcaagaattgaatgaattgtctgtctg</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0143400, RefSeq:Os06g0143400