Os06g0178900

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Revision as of 09:06, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0178900| Description = Vacuolar H+-pyrophosphatase (EC 3.6.1.1) (Ovp2)| Version = NM_001063501.1 GI:115466733 GeneID:4340298| Length = 4771...")
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Gene Name

Os06g0178900

Description

Vacuolar H+-pyrophosphatase (EC 3.6.1.1) (Ovp2)

Version

NM_001063501.1 GI:115466733 GeneID:4340298

Length

4771 bp

Definition

Oryza sativa Japonica Group Os06g0178900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:3918533..3923303

Sequence Coding Region

3918642..3918894,3920289..3920863,3921005..3921384,3921487..3921573,3921659..3921989
,3922122..3922532,3922616..3922675,3922772..3922978

Expression

GEO Profiles:Os06g0178900

Genome Context

<gbrowseImage1> name=NC_008399:3918533..3923303 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:3918533..3923303 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgatcctctcggcgctcgggaccgaggtgttcatccccgtcgcggccgccgtcggcgtcgcgttcgccgtcgcgcagtggctgctcgtcgcgcgggtgaaggtcaacccggcgcacgcggcggcggccgcggcgtcgggggggagcaagaacggcgggtacggggactacctcatcgaggaggaggaggggctcaacgaccacaacgtcgtcgtcaagtgccacgagatccagaccgccatctccgaaggagcaacatcatttctcttcacggagtaccaatatgttggtatcttcatgtcaatcttcgctgtcgtgatcttcctcttccttggttcagtcgagggattcagtacaaagagccagccttgcacatacagcaaggacaagtactgcaagcctgcccttttcaacgcgctctttagcactgcatctttcttgctgggagcgatcacctctttggtctctggttaccttggaatgaagatcgccacatttgccaatgccagaactaccctggaagcaaggaagggtgttgggaaggcatttatcattgctttccgctctggtgctgttatgggcttcttgctggcatcaagtggtcttgtggttctttacatcgccattaatgtatttaagttgtattatggtgatgactgggaaggtctttttgagtctatcactggttatggtcttggtggatcttccatggctctcttcggaagggttggtggaggtatttacactaaggctgctgatgtgggtgctgatcttgttggcaaggttgagaggaacatccctgaagatgatcccaggaacccagctgtgattgctgacaatgtcggtgacaatgttggtgatattgctggaatgggatcagatctctttgggtcatacgccgaatcatcctgtgctgctcttgttgttgcatctatctcatcttttggaatcaaccatgatttcactgggatgtgctacccactgcttgtcagctctgttggcatcattgtttgtttgatcaccacactctttgcaactgatttctttgagatcaaggcagtgaaagaaattgaacctgctctgaagaagcagctcatcatctccactgctttgatgactgttggtattgcaataatcagctggttggcccttccagcaaagttcaccatcttcaattttggtgctcagaaggaagttaccaactggggcttgttcttctgcgttgcaattggtctgtgggctggtctgatcattggttttgtgacagagtactacactagcaatgcatacagccctgtgcaagatgttgcagattcctgcagaactggtgctgccactaatgtcatatttggtcttgctctgggatacaaatcagttatcatcccaatttttgctattgctgtcagcatatatgttagtttctctattgctgcaatgtacggcatagccgttgccgctcttggcatgctaagcaccattgcaacaggccttgccattgatgcttatggtcctatcagtgacaatgctggtggtattgccgagatggctggtatgagccacagaatccgtgagagaactgatgcccttgatgctgctggcaacacaactgctgctattgggaagggttttgccattggatcagctgctctggtgtcccttgcactttttggtgccttcgtcagcagagctggagtgaaggttgttgatgtcctgtctccaaaggtcttcatcggtttgattgttggagccatgctcccgtactggttctctgccatgaccatgaagagtgttggaagtgccgccctcaagatggttgaggaggttcggaggcaattcaactccattcctgggctaatggagggaactggcaagcctgactatgccacctgcgtcaagatctccactgatgcttccatcaaggagatgattccccctggtgctttggtgatgctcacccccctcatcgtcggaactctctttggtgtggagaccctgtctggtgttctggctggtgctcttgtttccggagttcagatcgccatctcggcctccaacactggtggcgcatgggataacgcaaagaagtacattgaggctggtgccagtgagcatgctcggacccttggtcccaagggatcagactgccacaaggccgccgtgatcggtgacaccattggagaccccctcaaggacacatcaggcccgtcgctcaacatcctcatcaagctcatggccgtcgagtcccttgtgtttgcgcctttcttcgccacacacggtggtctgctgttcaagtggttctaa</cdnaseq>

Protein Sequence

<aaseq>MAILSALGTEVFIPVAAAVGVAFAVAQWLLVARVKVNPAHAAAA AASGGSKNGGYGDYLIEEEEGLNDHNVVVKCHEIQTAISEGATSFLFTEYQYVGIFMS IFAVVIFLFLGSVEGFSTKSQPCTYSKDKYCKPALFNALFSTASFLLGAITSLVSGYL GMKIATFANARTTLEARKGVGKAFIIAFRSGAVMGFLLASSGLVVLYIAINVFKLYYG DDWEGLFESITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPA VIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHDFTGMCYPLLVSSV GIIVCLITTLFATDFFEIKAVKEIEPALKKQLIISTALMTVGIAIISWLALPAKFTIF NFGAQKEVTNWGLFFCVAIGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVI FGLALGYKSVIIPIFAIAVSIYVSFSIAAMYGIAVAALGMLSTIATGLAIDAYGPISD NAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGV KVVDVLSPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNSIPGLMEGTG KPDYATCVKISTDASIKEMIPPGALVMLTPLIVGTLFGVETLSGVLAGALVSGVQIAI SASNTGGAWDNAKKYIEAGASEHARTLGPKGSDCHKAAVIGDTIGDPLKDTSGPSLNI LIKLMAVESLVFAPFFATHGGLLFKWF</aaseq>

Gene Sequence

<dnaseqindica>110..362#1757..2331#2473..2852#2955..3041#3127..3457#3590..4000#4084..4143#4240..4446#gagtgtgcagagcgagagacgcgtcacctcctccccgccgccgccgccgccgcctcgcctccgttgcaaccgtagtagggttagggttttcgtggtgggcgccgccgccatggcgatcctctcggcgctcgggaccgaggtgttcatccccgtcgcggccgccgtcggcgtcgcgttcgccgtcgcgcagtggctgctcgtcgcgcgggtgaaggtcaacccggcgcacgcggcggcggccgcggcgtcgggggggagcaagaacggcgggtacggggactacctcatcgaggaggaggaggggctcaacgaccacaacgtcgtcgtcaagtgccacgagatccagaccgccatctccgaaggtgaatctctctctccctctcagatctggccgcgtcgcctggttcggctagatctgatcgttcccgtggccgtttcggccgagacgatgcggctttcgcgcgttcttcgtggggattacttatattattaaatcattcttaagtcatttcgtatctgggcgtatgattttgtcgatgagcgcgacattgcaggggcaaaatggttcgttttttggttctattctcccttgattagttagtttcaataacgacgatctgatgggaaaacttccaaaagctcctcaaaaaagatggctttgtgaatgaagaagaatcatgaaaaatccgagatgaaccgctgaagtgatgttaaagattggaggttttaggcgatggaagccaaatcttctcgttggggcttttggtttctttgtgggggctgccaaatagtgctactttgtccaaatatgtgctttcctgatattttagtctctcctggtttgccccaaatctgtattttttctagtgggggctcctcctgtgttgatatgttttctttttttgttttcgttagaattcacttttgtctatgccactgagtgggggctggcaaatatttttctttgccccaagacggtagatctgcacattagttgggctaaatcgagggttcagtaatgagttcttttaatgcttgaagcggtgctcttaccctgtgtcggttttgtaggaaagatgtagctttcagtagtagtacaaattctgcagtggaaggcgcgtgagggatctgtctgtcccaacttaacaagttgatctagtcagtattaggctgacttaagttttacattaatgtaaacctgggctccaatcttctggtgcccggtagatctagtctggaaacgtaaggataccaagccatatgtcaccaacgtgtcagcttagcacatgacctatgaatttgctgtcttcatcagtatggatggcttaatgctcttcagatgcgtgtcccattagtgcggtttgtttatgtatgtcaccaatcttggctcatgccttctttctttgattgtgatggggacacaggaagagctacttctggaatatctgctaggatttggacatggggcttgtcacttgctctcgggtggtttacggcttatttttttctagtatatatgtgcacatgctcttcttccattttttgctgatgtcagaagataaaatccgaccaaagcttattatggtgttcagtgtcatgtcatgtgcattggtttgacaaatcaatattctgtattatttttcatagtttgtatgggaattgcaatgtaatttagcaaaactttgcttatactgacactaagtcgtgttgaatgatatgattttttttgtaacaattgccttctttttatgagcaggagcaacatcatttctcttcacggagtaccaatatgttggtatcttcatgtcaatcttcgctgtcgtgatcttcctcttccttggttcagtcgagggattcagtacaaagagccagccttgcacatacagcaaggacaagtactgcaagcctgcccttttcaacgcgctctttagcactgcatctttcttgctgggagcgatcacctctttggtctctggttaccttggaatgaagatcgccacatttgccaatgccagaactaccctggaagcaaggaagggtgttgggaaggcatttatcattgctttccgctctggtgctgttatgggcttcttgctggcatcaagtggtcttgtggttctttacatcgccattaatgtatttaagttgtattatggtgatgactgggaaggtctttttgagtctatcactggttatggtcttggtggatcttccatggctctcttcggaagggttggtggaggtatttacactaaggctgctgatgtgggtgctgatcttgttggcaaggttgagaggaacatccctgaagatgatcccaggaacccagctgtgagttttctcatctctttgtcaggctattaattttattttagggaagttaaggggataatcgtatcagtcccgcagtattgtagtgactattatagttcatgatcttccctctctgaacttcctcttcttgttttgcaggtgattgctgacaatgtcggtgacaatgttggtgatattgctggaatgggatcagatctctttgggtcatacgccgaatcatcctgtgctgctcttgttgttgcatctatctcatcttttggaatcaaccatgatttcactgggatgtgctacccactgcttgtcagctctgttggcatcattgtttgtttgatcaccacactctttgcaactgatttctttgagatcaaggcagtgaaagaaattgaacctgctctgaagaagcagctcatcatctccactgctttgatgactgttggtattgcaataatcagctggttggcccttccagcaaagttcaccatcttcaattttggtgctcagaaggaagttaccaactggtaaactacttgtctaactttctttgtttgtgaaatgttgtctagttttgttatttgtttgtgaaatgtattctttctgattaatttgctgtggtttcacaggggcttgttcttctgcgttgcaattggtctgtgggctggtctgatcattggttttgtgacagagtactacactagcaatgcatacaggtaagaaacctattagtttccaattatgatgtctttcaccattgttacattacatgttttaatccctactgcttctttttggcagccctgtgcaagatgttgcagattcctgcagaactggtgctgccactaatgtcatatttggtcttgctctgggatacaaatcagttatcatcccaatttttgctattgctgtcagcatatatgttagtttctctattgctgcaatgtacggcatagccgttgccgctcttggcatgctaagcaccattgcaacaggccttgccattgatgcttatggtcctatcagtgacaatgctggtggtattgccgagatggctggtatgagccacagaatccgtgagagaactgatgcccttgatgctgctggcaacacaactgctgctattgggaaggtacaatcatgtgcttactcttgatgagcattcccaagctattattagttaattaagcattagaattagtgggtgcttaggaagaactgttatgttggttctgtgatttgatccttttatattcttttgtagggttttgccattggatcagctgctctggtgtcccttgcactttttggtgccttcgtcagcagagctggagtgaaggttgttgatgtcctgtctccaaaggtcttcatcggtttgattgttggagccatgctcccgtactggttctctgccatgaccatgaagagtgttggaagtgccgccctcaagatggttgaggaggttcggaggcaattcaactccattcctgggctaatggagggaactggcaagcctgactatgccacctgcgtcaagatctccactgatgcttccatcaaggagatgattccccctggtgctttggtgatgctcacccccctcatcgtcggaactctctttggtgtggagaccctgtctggtgttctggctggtgctcttgtttccggagttcaggttggcattatgttctctctccctcattatgtgcttgtgcgagtttgctagttcaatggatctataatcttcctcttctccagatcgccatctcggcctccaacactggtggcgcatgggataacgcaaagaagtacattgaggtaaatgttcagaaaatcctgattgatcatgttttgcaactcattatccttcgcgagacttaactttacatcaacttgctccctgttttatttcaggctggtgccagtgagcatgctcggacccttggtcccaagggatcagactgccacaaggccgccgtgatcggtgacaccattggagaccccctcaaggacacatcaggcccgtcgctcaacatcctcatcaagctcatggccgtcgagtcccttgtgtttgcgcctttcttcgccacacacggtggtctgctgttcaagtggttctaagaacataataccattggcagcagcgctgaaatcttcgacggacatcacgaataacgactgccagtgtacgttgtgcttgggaatcgcccgcaccgtttctttttgggtctcatgttgtttcaggattgctgttgtcttatctttggcctcttgggagttgttaccttagccttactgttagcttcacttagaagagaccagagtccagatgttctcccatctctggtgcgtgtctggcaaattttcctcgtcccatgatgacgacgataatgtttgaactcttgaacaatgagatgatgattgttgcatgttagttactggtggt</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0178900, RefSeq:Os06g0178900