Os06g0182500

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Revision as of 09:07, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0182500| Description = Ubiquitin interacting motif domain containing protein| Version = NM_001063520.1 GI:115466771 GeneID:4340317| Length ...")
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Gene Name

Os06g0182500

Description

Ubiquitin interacting motif domain containing protein

Version

NM_001063520.1 GI:115466771 GeneID:4340317

Length

7631 bp

Definition

Oryza sativa Japonica Group Os06g0182500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:4092232..4099862

Sequence Coding Region

4093129..4093248,4094481..4094571,4095320..4095473,4096441..4096561,4096652..4096735
,4097130..4097249,4097365..4097577,4097666..4097728,4097852..4097967
,4098316..4098374,4099310..4099629

Expression

GEO Profiles:Os06g0182500

Genome Context

<gbrowseImage1> name=NC_008399:4092232..4099862 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:4092232..4099862 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggttggttgaccaaattttttagaggttcaacccacaaaatctcggaagggcaataccacagcaaacccgcggaggagacgatatggaatggaccctctaattccgcagttgtgacggatgtcccgtcagaatttgacaatgaagatatcgctcgtgctatatcactctctctattagaggaggaacaaagaaaggcaaaggcaatagaaaaggacatgcatttggaggaggatgaacaacttgcaagagctatccaggaaagtttgaatgttgaatcgcctcctcgtgctcgtgaaaatggcaacgccaatggtggcaatatgtatcaaccactgccatttatgttttcttctggattcaggacttgtgccggatgtcacagtgagattggtcatgggcgtttccttagttgcatgggagctgtttggcatccagaatgttttcgctgtcatgcttgtaatcaaccaatatatgactatgagttctccatgtcgggaaaccatccataccataaaacatgctacaaggagcgctttcacccaaaatgtgatgtctgcaagcaatttattcctacaaatatgaatggcctgattgaatatagagcacatcctttctggttacaaaaatactgtccatcacatgaggtggacggtactccaagatgctgtagttgtgaaagaatggagccaagggaatcaagatatgtattgctggacgatggtcgcaaactctgcctggagtgccttgattctgcagttatggatacgagcgagtgccaacctctttatcttgaaatacaggaattttatgaaggcctaaatatgaaagtggaacaacaagttcccttgcttcttgtagaaagacaggctttaaatgaagccatggaaggagagaagactggtcaccaccatcttccagaaacaagaggtttatgcttatcagaagagcaaactgtcagcacgatattgaggagaccaagaatggctggaaataaagttatggaaatgataacggagccatataggttgactcgtcgatgtgaagtgactgcaattctcattctttatggtctcccaagattgttgacaggttcaattttagctcatgagatgatgcatgcgtggttgcgacttaaaggatatcgcacacttagtccagacgtagaagagggcatatgccaagttcttgctcacatgtggattgagtcagagatcattgcaggatcaggcagtaatggtgcttcaacgtcttcatcctcatcagcatccacatcatcgaaaaaggggggaagatctcagtttgagcgaaagcttggtgattttttcaagcaccaaattgagtcagatacctcaatggcctatggcgatggttttagagctggcaaccgagctgttcttcagtatggtctaaagcgcacccttgagcatatccggttaacagggactttcccattttga</cdnaseq>

Protein Sequence

<aaseq>MGWLTKFFRGSTHKISEGQYHSKPAEETIWNGPSNSAVVTDVPS EFDNEDIARAISLSLLEEEQRKAKAIEKDMHLEEDEQLARAIQESLNVESPPRARENG NANGGNMYQPLPFMFSSGFRTCAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYD YEFSMSGNHPYHKTCYKERFHPKCDVCKQFIPTNMNGLIEYRAHPFWLQKYCPSHEVD GTPRCCSCERMEPRESRYVLLDDGRKLCLECLDSAVMDTSECQPLYLEIQEFYEGLNM KVEQQVPLLLVERQALNEAMEGEKTGHHHLPETRGLCLSEEQTVSTILRRPRMAGNKV MEMITEPYRLTRRCEVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLSPDVEEG ICQVLAHMWIESEIIAGSGSNGASTSSSSSASTSSKKGGRSQFERKLGDFFKHQIESD TSMAYGDGFRAGNRAVLQYGLKRTLEHIRLTGTFPF</aaseq>

Gene Sequence

<dnaseqindica>898..1017#2250..2340#3089..3242#4210..4330#4421..4504#4899..5018#5134..5346#5435..5497#5621..5736#6085..6143#7079..7398#cgggtcacctgcctcctcctgccgtgccacaaaaagcaaggcaaagcagcagcgaggaggcgagacagattcccaaatcccgcacaaccccaccccgaatccaccaccccacgccaagcccgctcgccgccgccgcccgagcgcgcgcgcgtacgggcacggcgggcgtacgacgccggaggtggggatcgagcgtgccccctcctccgtcgcggcgggcgacgtcggacgtcgtcggtcgtagcttgccttcgtttcgttgtcgggttttcggtgctgctgctgctgctggtggtggtcgagcaaaggccggtggcggatcgccggcggtcccgtccgcgggaggggcgcgggtgacgcggtgatcaggtgatcggagccccacccttcgttttctccgcgcaattttagcaccgacgcgggtggtggtggtggtggtggtggtgggcattggcatttcgtccccttccccacgatagagacgcggagcgtgtgccccccctctcgatcttgccgccgctcgtaatccccgcctgatgccggagaacctgcatttttttttgagccattccaggcttacgttctaatgcgacgctgctagcgatagaaaacccagtggggggtctgtgagaatcatcgcttgatctccgatctatcctgttaaccattcctgtgaggttaggaggtttctggtttaggggcctgagtgaggaggagggtactcaaacggctggacctgcaatcgatctgctaacttggctaactttggtaactagttatgattctctggtgttgatcccttgcttgaaatttttcttgtgttatattgtggtatcctaacatcttggattgattgcagataaaagtgtcccttccaacattgccatttggagctctatgggttggttgaccaaattttttagaggttcaacccacaaaatctcggaagggcaataccacagcaaacccgcggaggagacgatatggaatggaccctctaattccgcagttgtgacggtaagttcttctgtgttatacatttacctctcaggagtaagagctcattaattgttctacggttatcttcgtgttagggcaaaagtgcattcttataaaactaggatagccaaaggagatgcatttgaaatgtgctccaaaaagcttggattgcaccctcgtatagagtattaaatctcactttgtttctccctttgttctataacatatgccattgcggcatgttcacaatcaaaattttggtctttgactgtttgtccattaaactataaacaatgtactgcgattctgcgccataaaagaaataccaatagatgtgggaaaaaaaaactaccatcatgttctaactttccaaccatattctaaaatatttttattattaacagttgcggatagatcattatccctcttgaaagtgttggctacatccatacacaaaagttttgccattactgatatggacatagaaaactgcaaactgttggttttgatgggaaatgtggttcccgtgtttagatggtgtacccactagagtccacatttggtcaactcgacttgctattgttggctactgatctccgtcaacttgtcattgacgatgtagattgttgtaagttgaggcaacaggcccaaccagtcttgcacctcatgtactcacaattgcaactcttgcaaacttctcatgctcatcagcatggtgtatgtacgccacttacagtgtaaaatgtaactatatcttgacgctcttgtacaaaacaagaaattttttaccctggttagggagaacaattctgtgtgttttatgtcttcctttgtatgcagagcataacgctattaccagttctgttggtgtaaatctgtactattctaatctccgaatttggaggtgcacaaatgcaatttcccctgctgaaaaatacatcatcgcttcacattgctatcttgcttagtaggtcatataaacataatttttcttatctgtaatactgttatgtggttttgttggttgagtttcaggtgatttggtgattggtcaatgtgaattaagtattaacaaaaactataccactgattttttgtgcatatgcctctaggttcaggatgacacaaattgcttccaaatataatgagcttatatgccattgtagtagtatctgttatttagtgcttaaaaagaatgggaatctacatcttttgactatgtagctgatctattttcaaattcaatttaggatgtcccgtcagaatttgacaatgaagatatcgctcgtgctatatcactctctctattagaggaggaacaaagaaaggcaaaggcaataggttagtatggtaactaatactagtacttctgctgtttgagtacttactgtccaaaaaggctgacatttgtccgcttctttacttccagcagctgttccttcatatcatttttattcgatgacatctgtcaaagtgcttagcgttttaacttttaagagagccccttgtgcttatttccacacctatcagaaaatttttggagctagttcattgccgatgatacagtatgttcatatggagtccatgtttaggataagtttcttcacactctctgtttctgaacttggttgatctttttttagtttcacatttatacaaggactaggccaacattatttttcttttgagtcacaatatagaatagtatgttaatactcaacggcaaagcataaacagatccattgtgagaaaaagaaatttatatatgtgttattctttcatgagaaatatacatgttgaattgtggctattttttgttatgtgttggtgaaatgtttggtgcgagttctctggttctagatgtaaaaatcgaaaatcatagtgtggacattttgtatatacttctgtaccaaatgtttggattagaactgtacccaagtaataaaagtgcatctggaagtattatataaaatgctgtttggagctacctatcaagcaattctacatcatggtattctgtgtctatgatcgatgaatccatgcatttaacatgcaatactttttgtttcattttctttcactcatctagaaaaggacatgcatttggaggaggatgaacaacttgcaagagctatccaggaaagtttgaatgttgaatcgcctcctcgtgctcgtgaaaatggcaacgccaatggtggcaatatgtatcaaccactgccatttatgttttcttctggattcaggttcattttcatttttcttactttagtataactagatactttgtagtagatactttatgtggacatgctattttgggttcattgatgttgaagtgccacataactactgatacgagtattcaccataaagcagtataataaattaagtcctgaaccatacagactacgtgctactgttttttaaaacaccacttttgtttgtttttgtattgccccgcggcgtgctgactttaacaattcattccctggatatcacatttttgtgtaaggggttcacagatatattttagtgggtgtatcttgatttaaaaaacttatgtaccagattttcagtgtgagtttgcatatgaactaaagaggtcaaaggcaatctccctagttttgtttgatacaattctgtagagctaaggtgtacagctgagcagctcttttgcgagtttgaaaactgtggacctcagttttgccaaattaaatttttgtaaatatttcttttacccctgtgaagaaggttcaaactatctaggttataggtcgtgctagctgttgtagccacagacactgctaaatctgagatttggtgcagctgtcagctgcaccacagccacagcaagcacaggagattaccccttatggtatgtaggtgtcaaccatagaagaaatcacccccttttgggttcattgattaaacttgcagtgactgtggcctatggttgcactattgcatgcatgttttgaagtcctgcaaaatctgcagggttccattataccttcaccagaagcacccaggatatgttctttacagtgtcataaagcaaaaaagtgattagtgtatattttgttacccaaaagttaaaatgcaagaaagagctgcactgatacttggggatggtaattggtaagcgagaatgggatgctgcgagttgcttttactcttactgtttcttaatatatacgcttatttcctcaggacttgtgccggatgtcacagtgagattggtcatgggcgtttccttagttgcatgggagctgtttggcatccagaatgttttcgctgtcatgcttgtaatcaaccaatatatgactatgaggtaactcctttgtttacttattaagcagttatccatgtctgcaagagtaatgtttctatgcttatagtcaaccaatatatgactatgcagttctccatgtcgggaaaccatccataccataaaacatgctacaaggagcgctttcacccaaaatgtgatgtctgcaagcaatttgtaagagtcgcttcattagtttgctcttatctgtttgcataagacggatcgttttgttctatattttcatacctagtactatcaaagcttcctctgaactgatataccgtgctgttgttaaatgaggaaactactccacatgccatcatgattgcaatgtttactgttgctgatatatgattaacatgcatattcaccttttctcattttctattacaattgtgaaagccttgaatcatgtggatagctgattggccatgtttgcatttgaaaagcactagtcatggggcagcaaataattgacatgtgaaagttgttaacatgtgttaagtaacagccgacaatttctttttgtttttttaaatgcgccatcttacagttccttcttattcagattcctacaaatatgaatggcctgattgaatatagagcacatcctttctggttacaaaaatactgtccatcacatgaggtggacggtactccaagatgctgtagttgtgaaagaatggaggtacgttcaattaccatgtttgaatttataaatctgattcagcatacttggtcagatatgttgctgttgcaaaattttgatcagttcatcaaaaaatggcttgtgctcttatcagccaagggaatcaagatatgtattgctggacgatggtcgcaaactctgcctggagtgccttgattctgcagttatggatacgagcgagtgccaacctctttatcttgaaatacaggaattttatgaaggcctaaatatgaaagtggaacaacaagttcccttgcttcttgtagaaagacaggctttaaatgaagccatggaaggagagaagactgtatgttgaccaaagctggacaatccatgattctcctgtttttcactatactaatgttagtaaatattttgtttcctgtggaaaccagggtcaccaccatcttccagaaacaagaggtttatgcttatcagaagagcaaactgtcagcacggtgagaactattctgagcatgagatgaatggatcttttcataatttaaattctatttcaattgtattggtctgctgtgttctgacttctgactgagttccagcatttatttttaatattttagatattgaggagaccaagaatggctggaaataaagttatggaaatgataacggagccatataggttgactcgtcgatgtgaagtgactgcaattctcattctttatggtctcccaaggtgaaccacttactatctgtttcataatgccattgttaccttgttgctactcttttaatatcaacaaaaactaggaggaatattcgaatttataactgatttgaaataatatttctttctgtgttggagaatacattcttctaaaaaatgttatggattcactgaagatattctggactgcatgctgactctacagagttaatgggaaaagatattactcttgtgccttgtcactgtagcttctgcagtacaatatgcaaattatttgttgtgttatcatttggttcttctgtattgggacctcatgaagtacattgtcggtattttaatgtgttattgttcttgcagattgttgacaggttcaattttagctcatgagatgatgcatgcgtggttgcgacttaaaggtaatttttaattctcattttcattcttggacaaacatcataataaaataacacacgagaagtcagagaagaggaaaaggaccttttattttcaattaaatagcacatgtttgttcaaagacaaacaggttagtaaaagcaattgagttgctacaaatcaatgtaaactgcccatacatcaatggaattgttctactctttttagtgtactaattgttctactcttattgggtgtacaagtacaacacattggtaatctagagcattgaactttcacggtctttggttgtggtaaagactaaaaaagatcatggttcaagattcctacagaaaactgtgtggtttacttctcacttataatgactagctattctggtgagggtgattgcctgatagggccaggatttttttgcattgtggctgagactgccaatttgccatttagcatatgactgagtacctgaaccaagaatatagcaactaaaactatattcttcgctagaaacttggtcatcttgctttcaagattgtacaagtccatgagtgggtgaacttggggagttaccatgtaaattgttggcaatcctccgttatatgccactaataataagtatattggcaatgacaaaacaatcaacactactattaatcttgtaaatctcagtacaaaatacaagctagtcacatcaccacatgctgtccaccgctgaatatgaaatcaaaactaatagtaatgatattagcaaatctgttatctaaggaaggtgctgaataatagagaaaaagagagaatccatattgcagcgcatgattcagtacttcagtcctattctgtatgaggaagagtttacattagcttgccactgtcatcactctctcatttacttaaaaaatgtatatggacatttcatgctataatgcatatctacttgcaggatatcgcacacttagtccagacgtagaagagggcatatgccaagttcttgctcacatgtggattgagtcagagatcattgcaggatcaggcagtaatggtgcttcaacgtcttcatcctcatcagcatccacatcatcgaaaaaggggggaagatctcagtttgagcgaaagcttggtgattttttcaagcaccaaattgagtcagatacctcaatggcctatggcgatggttttagagctggcaaccgagctgttcttcagtatggtctaaagcgcacccttgagcatatccggttaacagggactttcccattttgaaatttcatagattcgtcttttgatggaagttatacacgatcgatttgtcattaagcgtccatttacaggaaaagaaagcaattttgagatgtgcaattgtacaaacaatcttttcagttacttttggaagggctaactgacgacattgattaaattgtgatatggttagcccaaccaatcacacatgtatggcattcagaaattctaatggaaacagcggtattttttatgtg</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0182500, RefSeq:Os06g0182500