BGIOSGA027260

From RiceWiki
Revision as of 17:06, 22 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA027260

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA027260, complete gene.

LocusTag

OJ1034_C08.29

Ensembl Transcript ID

BGIOSGA027260-TA

Ensembl Protein ID

BGIOSGA027260-PA

Length

6282

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:12954852..12961133

Sequence Coding Region

12961050..12961133,12960792..12960971,12960522..12960671,12959934..12960003,12959508..12959686
,12959335..12959394,12959078..12959231,12958925..12958984,12958571..12958839
,12958424..12958495,12958146..12958223,12957595..12957795,12956818..12956869
,12956207..12956250,12954852..12955085

Genome Context

<gbrowseImage1> name=IndicaChromosome08:12954852..12961133 source=RiceIndica08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome08:12954852..12961133 source=RiceIndica08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGACGCCGGCGACACATCCGCCGCCGCCGCTGTAGCCCCTACCCCGGCGCGGCTGCGGGAAGCGCTCGCCGCCCTCTCCAAGGCGTTCGAGTCCGGGGATTGCTCCGATGGATCCGCCGCGGCCGCCGTCTCCGACCTCCTCAACGCCGCGGCCGATGCAGCTGATGCGGATGCCGACGCCGAAGACGAGGCGGCGGCCGGGGTCGTCGAGGAGATGCTCCGGGAGGTGCACGCGTTCCTCTCGTCCCCGTCCTCGAATCAGTTGGCCATAGATGCTCTCTCACTAGAGCTGGTAAAACCTGTGGCGAAGCTGGGGGCACTGATGAGGAATTGCTGGGACATTGCCAACGCTATCATTGAATTCTTCGTGTCAAACTGCAACCCGAGGGACATGCTCTCCATCCTATGTGAGGCAGTAGATGCACCATTGGCATCAAATGGTTCAGTGTACTTTGTTCTTCTATTCAAGGAGCTAGCCAAAGTGCTTGTTTTGATTCAGAGGAGGCATACTGAGCAAGTAAAAGTCACACTTCCTGCTGTCCTTCGAGTTATGAATGCTGTTATACCAGAATGTGACGAGGAACATGGAAAGATCATCGTTGATATGTACAATGCAGCACTTAGAATTGGCAATGCCATTCAAGAAATGTGCAAAAAAATGGTAAACCAGACGAATGAAGAACTCTGTTCTGTACTTAGTCTATACTCCCTTCAGAACATAGCTCTTGTGTCAAGATGCAAACAACAGCATATTCTCTCTGCTTGTGGTTCAGTTGTTCTTCAGCATTCAAAAATTCTGACATTTTGTGGGTTCACTTATTTGGGTCTTTTGACTGGTAATGATGTCACCTCAGCCACCGATAAGATTTCAAAAGATGAAGATGCGGATTTGCTCGAGTGCTTTTCTTTTGCAATGAATGGTGCAAATCTTGCAGTTATCTGGACCTATATGGATGATGAAATCTCAAAATATGCTGGCGCTGAGCTGGAATCAGCGCTGAAAGATGTTAAGGGCAACCATACGAGGATGTGGCAAGCAATTAACATTCTTAGATATGTGTTGTCTTCAACTCATTACCCATGGGTAATAAAATCCCACAGTTTGGACTTACTGCTGACTATAGCTAATGAAAGTCGTATTGAGGAAATCAATGATCATGTAGATGTTTCATCTTCTGGTCCTCAAATTTTTGCAACACTCAAGGCCATTGAAAGTGTCATGATTTCCGCCCCAGATGCATTAATGCGGAAGAAAGCTTTTGCTACTTTGAAACAGGTTATTTCAATGGTGCCATCCTCTCAGAGATTCAACATCTTACAGGCTCTTATAAAGAACAGCATCTTCCCTTCATTGACTGCAATTCTCCTAGATCTGGTGAAGGATGAAGTTTCGAGAGAGATTCGTCGAGCTGATCAGGATATTGTTGAATCGGATCAATTACAAGATGGTGGCGAATGGCCACCACCTTGGTTTTCTCATGCACTTGAGTTGGTGGAGCTGATCTTGAAGCCTCCAGAAGGTGGCCCTCCTTGTCTTCCTGATCATGGTGAACAGGTATTATCAGCTTTGAATTTGCTGCGATTTGTTCTGATAATAGATTCAAGAGGATCAAGATCAAGAAAAATGTTTGGGGAAGAGACTATGAGGAAGATCGTCCTTGGGGCCAAGAAGCTCCGCCAGACGATTGGGATGGGCACCCCGCAGGACCGTGCGCCTACCCCTGATGAGAATGATCAGGCGCTGCACTTCCTGCGGCACCACCTCTGCACCACGCTCAAGAATGAGTACATGGGATTTAGGAGCCCACTCACTCTTTGGGCCGCACTCAAGAAGTGGTTCAAGAAGTTGAAGTACACCATCCTACCCCAAGCAGAGCAGGACTAG</cdnaseq>

Protein Sequence

<aaseq>MDAGDTSAAAAVAPTPARLREALAALSKAFESGDCSDGSAAAAVSDLLNAAADAADADADAEDEAAAGVVEEMLREVHAFLSSPSSNQLAIDALSLELVKPVAKLGALMRNCWDIANAIIEFFVSNCNPRDMLSILCEAVDAPLASNGSVYFVLLFKELAKVLVLIQRRHTEQVKVTLPAVLRVMNAVIPECDEEHGKIIVDMYNAALRIGNAIQEMCKKMVNQTNEELCSVLSLYSLQNIALVSRCKQQHILSACGSVVLQHSKILTFCGFTYLGLLTGNDVTSATDKISKDEDADLLECFSFAMNGANLAVIWTYMDDEISKYAGAELESALKDVKGNHTRMWQAINILRYVLSSTHYPWVIKSHSLDLLLTIANESRIEEINDHVDVSSSGPQIFATLKAIESVMISAPDALMRKKAFATLKQVISMVPSSQRFNILQALIKNSIFPSLTAILLDLVKDEVSREIRRADQDIVESDQLQDGGEWPPPWFSHALELVELILKPPEGGPPCLPDHGEQVLSALNLLRFVLIIDSRGSRSRKMFGEETMRKIVLGAKKLRQTIGMGTPQDRAPTPDENDQALHFLRHHLCTTLKNEYMGFRSPLTLWAALKKWFKKLKYTILPQAEQD</aaseq>

Gene Sequence

<dnaseqindica>1..84#163..342#463..612#1131..1200#1448..1626#1740..1799#1903..2056#2150..2209#2295..2563#2639..2710#2911..2988#3339..3539#4265..4316#4884..4927#6049..6282#ATGGACGCCGGCGACACATCCGCCGCCGCCGCTGTAGCCCCTACCCCGGCGCGGCTGCGGGAAGCGCTCGCCGCCCTCTCCAAGGTAATCGCGCAAGCTGAGCCCTAGGATCTCCTTCTGCCGTGTACCCTAGCTAAACCCTAGGATCTCCTTCTGCTCCAGGCGTTCGAGTCCGGGGATTGCTCCGATGGATCCGCCGCGGCCGCCGTCTCCGACCTCCTCAACGCCGCGGCCGATGCAGCTGATGCGGATGCCGACGCCGAAGACGAGGCGGCGGCCGGGGTCGTCGAGGAGATGCTCCGGGAGGTGCACGCGTTCCTCTCGTCCCCGTCCTCGAATCAGGTTCGATATCCTGTGCTTGCGTGTGATTGGTCTCTCCGCGTGGTGTTTCATGTTGCGATTCGCGGGGTGGGACGGGAGTAATTTTGGTGATCTCCTGACATTGTTGCCGTCTCGTAATAGTTGGCCATAGATGCTCTCTCACTAGAGCTGGTAAAACCTGTGGCGAAGCTGGGGGCACTGATGAGGAATTGCTGGGACATTGCCAACGCTATCATTGAATTCTTCGTGTCAAACTGCAACCCGAGGGACATGCTCTCCATCCTATGTGAGGTCAGTCACGCGTGCGTTTATTCTTGATAAATCCTGGCATTTGGCTTTACAGTTGCGTCTTGCAATGTTGATGAAATTCAGAATATAGACCCATACAGAGGTAACCTGTGTCTCCTTTAACTCTGAAAGATCCTGTGATTGGAAAGAGTTCTGGTTTTTATTTTATTGAGGGATGAAGGAAAAAGTCCATTTACAAGACTGAACTATCATCAAAATCTGAAATTCAACTCGGAACTTTGAAATGTGACACTATTCTTTACCCTTTCAAATAGATCTGGATAAGTTTTATAGTTTTTTAAATATGAACTGATGTTCCATTGTTTATTTGTTGCATCCAGTCCAAACTTGCACAATGCCAGGGCACTGGAATGTCCATTCATAATTGAGCATATTTTCATTTTGCATTCAATATTTCCAGACGACAATATATCTCTACCTCCTTCCCTCGCTTCTGCTCTCTGGGTTCCTATGGTATATTGCTCACCTTTTTGTCATGACATTATGTTGCTTTAATACAGGCAGTAGATGCACCATTGGCATCAAATGGTTCAGTGTACTTTGTTCTTCTATTCAAGGAGCTAGCCAAAGGTATATGTTTTTATATGAAGATTTCCACAGCCATCTCTCTGCTCATCGTTTGGAAATTTTGGTTTCTAATGGATGAATTTCCAGATAGGAATTGAGATACTTAATGCTCTATGCCTATATATATATAAGTTTAGATATATTCGCTTGACATATGTTACACACCTTGTGTGAATATTAACTGGTTAACATTTGTATTATTAAATATGTTTTTTTTCTATTCTTCCTAGCTAATTGTGCTTTGGGCTAGTGCTTGTTTTGATTCAGAGGAGGCATACTGAGCAAGTAAAAGTCACACTTCCTGCTGTCCTTCGAGTTATGAATGCTGTTATACCAGAATGTGACGAGGAACATGGAAAGATCATCGTTGATATGTACAATGCAGCACTTAGAATTGGCAATGCCATTCAAGAAATGTGCAAAAAAATGGTTTGTTGAGTTAAAATGCCATTCAAGTTGACCCTGTGTCCTAAACAATATGCGGTCGCCTTTTCATTTGTCTTTTCTGATTAATTTTGCATTATTGTTTCCATCACCAAAAGGTAAACCAGACGAATGAAGAACTCTGTTCTGTACTTAGTCTATACTCCCTTCAGAACATAGTAAGTACAAAACTGTGTTATTTATATATGTTATTTTCAATTAGATTTAGAAAGATTTATTTTCTTAATATGTTATTAATTATTATACACTCCTATCTTGCAGGCTCTTGTGTCAAGATGCAAACAACAGCATATTCTCTCTGCTTGTGGTTCAGTTGTTCTTCAGCATTCAAAAATTCTGACATTTTGTGGGTTCACTTATTTGGGTCTTTTGACTGGTAATGATGTCACCTCAGCCACCGATAAGATTTCAAAAGGTGTTTAACTTTTCCAAATTATTTTTCACTTGGAAATATTGTATTCTGTTTGCTTGATTGTCAACTGATGCATTTGTTTGCAAAGTGATGTAGATGAAGATGCGGATTTGCTCGAGTGCTTTTCTTTTGCAATGAATGGTGCAAATCTTGCAGGTTTGATGATCATTTTGACTACACTTTCATTGGACAATGCATGTTGTTTAGATACCACTTGGTCACATGCTTGAGCTTTTTGCAGTTATCTGGACCTATATGGATGATGAAATCTCAAAATATGCTGGCGCTGAGCTGGAATCAGCGCTGAAAGATGTTAAGGGCAACCATACGAGGATGTGGCAAGCAATTAACATTCTTAGATATGTGTTGTCTTCAACTCATTACCCATGGGTAATAAAATCCCACAGTTTGGACTTACTGCTGACTATAGCTAATGAAAGTCGTATTGAGGAAATCAATGATCATGTAGATGTTTCATCTTCTGGTCCTCAAATTTTTGCAACACTCAAGGTAATGTTACGCTTTACTTATATATTTAAAAATATGTCCCAATCTACTATATCAACAATTTAAGAACATTCACAGGCCATTGAAAGTGTCATGATTTCCGCCCCAGATGCATTAATGCGGAAGAAAGCTTTTGCTACTTTGAAACAGGCAAGTATCATATATACTGTTGGTTTTTTTCTTTCTCTTTGTTTTAACAATTGTCATGAATATATTTTTGACTTGTGTTTGTATATGTCTGTAAGATAATATGGGCAGGATGGTAACATGTTCCTTCTTCAGTCTGTACTGTGGCATTTCTTCTTTTTCATTTTGAATGTCACTTCTTTATAACGCTGAAATTTTATCAGGTTATTTCAATGGTGCCATCCTCTCAGAGATTCAACATCTTACAGGCTCTTATAAAGAACAGCATCTTCCCTTCATTGGTAAGAACTAAGAACACAATCTCTGCATGCAGTTTAAATGGTATTCTCTCTATCCCAAAATACAGCAACCAAGTACTAGATTAGATGTCTCGTAGCACTAGTGGTGTCTAATCTTGTACTAGGTTGCTATATTTTGGGACGGATGGAGCAAGTAAGAGCATCCTGTTGATGCCCAATATACATATAGGGAAAGAAAGGACCATACAATGGATCTCAGATTTTCAGTTACCGCCACCTAACATTTTCTGGTGTATGATGTGCTTGGATTGATAGAAACATGCAGTTTTATGATTTTTAACTTCATTTTTCAACTCCATCCTTTAAATCGTGAATTATGTTTTTTCTTCTAGACTGCAATTCTCCTAGATCTGGTGAAGGATGAAGTTTCGAGAGAGATTCGTCGAGCTGATCAGGATATTGTTGAATCGGATCAATTACAAGATGGTGGCGAATGGCCACCACCTTGGTTTTCTCATGCACTTGAGTTGGTGGAGCTGATCTTGAAGCCTCCAGAAGGTGGCCCTCCTTGTCTTCCTGATCATGGTGAACAGGTACCCTCTTTTTATGTCACTACTCATGAGGAGCATAAATATCTGTTGGAAGAACTCAGGCAACAGCAACATAGATGGAATAGCATTAGTTGATACAAGATGCCTGTTTCCGTATTAAAATAAAAGGAGGATGACTGTTGGGCAGGAATAGATCTAGATAAGACAGACATGAACTTGGAGACTTGTCTAAATCCACAGAAGGACGTCAAGGACTAGGAGAGTTCTGTTCATCTTTACCTTATTAAATCTCAGTGAACCAGCTGTGTCATCTTAGGCTCTTGAGAAATTAGCGAATGATTATAACAAATGGCTTCAATACTTATAAAGATACTCTTAACAACTGAATAAAATATAGAATAATTAAAGTCTCAACTCCAATCCAAAACATTGAATATCGATCTATCATTTTTCCTTTTTCTTTTCGACTTAATTTGTCAGACTCTCGTAATCTCATTTTTGTAACTTTTAACATTGAATGAATTTATACTAGTAAATTGAGATGAGAAATGCATGTAAATTTTGTGGGAATATTTCATGTTAAATTTGATGTATAAATCAAAGCTGGATTGCGTGAATATCTGGATTCACCTTATATGTTGCCCACTTGTGTTGTGCTTCGTTATTCTTATGTGTCCTGCTAAAGTGGTAATTTTGTTTTACATCATTTTATGGCTTATGCCTAGAAAATAATCTGCCATGGTTCACTTTTTTTTATTTGTATGCAGGTATTATCAGCTTTGAATTTGCTGCGATTTGTTCTGATAATAGATTCAAGAGGTAATCTACAAAAAACCTGTGCTTAAAATTATATGTACTTAACTGAACTGTAACAATAATTGCATGGATTTGCTATTGCAAAACTAATGCTACATGATCACACCATCTATAAGACTATAATCTGCAAGTTTCTCTGTGGCTCTCGAAGCTTAATGTTTTCATAAATTAAATATTTGATTAAACATAATTTTGGTTATCAACGAGCTGGTGCATGGTTCTAATGTTCATTTATCTAACCAATAGTTGTCTAAAACACTTTCTTCTTTTTCATTCTTCCAAATGTCCTTTAATAAAGAGCTGTAACATTGAAACTCTGTTAATGTGAACCTATATAGTGTACTAATCCCAAGTAATGTGTTGAAAAAATTGCATATGTCCTTTTTAGTTTCCAAGCTTGTAAACCCATAGAATCAAAGATGGCTCGAGACATAAAAAGAAGTGGTTGCATCTTATTTTTGAACAAAAGATGCATGGTGTTCGACTTCATGAATGGATTAAGGCTCATGTGATTTAGTCCTGGGATTAATGTGAATCGTCAGTTTGATATATTTTTCCCATTTTGTCCAGGATCAAGATCAAGAAAAATGTTTGGGGAAGAGACTATGAGGAAGGTGTACTCAGAGTGGCTGATGCCATTAAGACCAATTGTTGCAGGAATTCAATCAGAAAGTGAAGAGGATGGTAGCGACGTTGCAAATCATATCATGTGCTCGTTAAATCCTGTTCAATTAGTATTGTACCGCTGCATTGAGCTGGCAGAGGAAAAGATGAAAGGTTTCTAACGTTTTCAGTTCACTGGTTTTTGTACAATATACTGCTGTCTCGAGGCAAAACATGAACAAGTTGTGAATATTATCCCAATGATTTGAAGTTCAGGAATGTTCTTATGCGTTTTTTTATGTTGTACAGTGATACTGTCGTCCTTCATAATTCATTTTGCTGGATGGTCTCGTTCGCTTTTTGCAAAGCTGCACCGGCCGAGCCGTGCCCGCGCGCCACGCATGGCCGCCACACGGCTCCGGCCGATCCGTGCCCGCACGCCGTCCACGCGCCGCATGGCCGCCGCCGCCGCGCATGGCCGCCGACCGGGCGCGCCATTCACGGGGAGAAGAAAAGGAAAGGGAAAAGAAGGAAAGAGGAAGAAGAAAGAAGGAAAGAAATTAGCGGCTTTGCAAAAGAGCCGCTGGATTTTTTGGAAATCACGCGCATAACTCCCAGCATGGAAACTTTTTGCGCATAGGACCCTAGCATTTCGGAAACTCCCATTTCTAACCATCGACTGCATGGAAACTTAGAAATAGGCCCTTAAACTTTGCAGATTTCGCTTATATTTCATTTTGGAGCATATTATGTCTTAGTGCAAATTTTGAATTTAAATTTATTAAGGCATTATTTACTGTTAATGAATATTTTGAATTTTTCGTTTTCAGTATTTATATGAATATATGCAACTTTTTCACCCTTTTTCTATGTATGTATTTGTACGCATTTTTAATATGAACTCTAGTATTTCTTTATTGAATATTTCACATTTCTTATTCGCATTGCCAATGAATAAAAATATTGGAAAAATCATGAAATATTTGCATTCATATTTGCGACTATGTTACTAGAAGTAACTTATGAATATTTTGTCACTTTTTGCCACAGAATGTTAGGAATCACGAATAAGGAGTTCGCCAAACTGGCCCAGCATGGCCAGAACTACCTGACTTGAGCATCCGATGTCTAGATCGTCCTTGGGGCCAAGAAGCTCCGCCAGACGATTGGGATGGGCACCCCGCAGGACCGTGCGCCTACCCCTGATGAGAATGATCAGGCGCTGCACTTCCTGCGGCACCACCTCTGCACCACGCTCAAGAATGAGTACATGGGATTTAGGAGCCCACTCACTCTTTGGGCCGCACTCAAGAAGTGGTTCAAGAAGTTGAAGTACACCATCCTACCCCAAGCAGAGCAGGACTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA027260