Os06g0192500

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Revision as of 09:08, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0192500| Description = ATP-dependent helicase, DEAH-box family protein| Version = NM_001063571.1 GI:115466873 GeneID:4340375| Length = 7185...")
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Gene Name

Os06g0192500

Description

ATP-dependent helicase, DEAH-box family protein

Version

NM_001063571.1 GI:115466873 GeneID:4340375

Length

7185 bp

Definition

Oryza sativa Japonica Group Os06g0192500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:4658871..4666055

Sequence Coding Region

4659150..4659205,4659312..4659361,4659454..4659534,4660046..4660262,4661404..4661791
,4662014..4662217,4663358..4663522

Expression

GEO Profiles:Os06g0192500

Genome Context

<gbrowseImage1> name=NC_008399:4658871..4666055 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:4658871..4666055 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccgtcgttcccttcctccggcgcttctccgcagaagcagcagcacaacgccaggaggaggcagctgattcggcagcagaggaagtcgctccccatcgcctcagtggagaagaggcttattgaagaggtgaggaagaatgacacgttgatcgttgtcggcgagaccggaagtggcaagacaactcagttgccacaatttttgtatgatgctgggttttgtcaggatggaaaagtcattggcataactcagcctcgaagagttgcagctgttactgtagcaaagcgtgttgctgaggaatgcaatgatcagttgggcaaaaaggttggctattctattagatttgatgattcgacatcaaatgcaacgaggattaagtacatgactgatggtttgcttttaagggaggcacttctggatccacttttgtctaagtatagtgtcatagttgttgatgaggcacacgaaagaactgtacatactgatgtcttgttgggtttgctgaaaaaagtgcaacattcccgatccatttatgccaataagaatggaaagattttgcctgacatacaacatcagtctcaatattttactctgaaggcatgccaaggaacaaaaattgatcctctaaaactgataattatgtctgctagtttggatgcaaagtgtttttcagattattttggcagcgctaaagctgtacatattcaaggacggcaataccctgttgacatactatacacttatcagcctgagtcagattatctggacgctacactagttactatctttcagatccatttggaggaaggaccgggggacattcttgcatttcttactggccaagaggagattgagtcactggacagacttattcaggagcgtgctcgtcaacttccaccacagagaagtaagatatggactacacctatttactcatctcttccatcagagcagcaaatgaatgcttttaagcctgcaccagctggaactcgcaaggtggttttagcaacaaatattgcagagacttctgtaacaatacctggtatcaaatatgttattgatcctgggatggtcaaagctcgtgcttataatcctgtaactggaatggaatctctgatcattatccctgtttcgaaagcacaggctcttcagaggaggtaa</cdnaseq>

Protein Sequence

<aaseq>MPSFPSSGASPQKQQHNARRRQLIRQQRKSLPIASVEKRLIEEV RKNDTLIVVGETGSGKTTQLPQFLYDAGFCQDGKVIGITQPRRVAAVTVAKRVAEECN DQLGKKVGYSIRFDDSTSNATRIKYMTDGLLLREALLDPLLSKYSVIVVDEAHERTVH TDVLLGLLKKVQHSRSIYANKNGKILPDIQHQSQYFTLKACQGTKIDPLKLIIMSASL DAKCFSDYFGSAKAVHIQGRQYPVDILYTYQPESDYLDATLVTIFQIHLEEGPGDILA FLTGQEEIESLDRLIQERARQLPPQRSKIWTTPIYSSLPSEQQMNAFKPAPAGTRKVV LATNIAETSVTIPGIKYVIDPGMVKARAYNPVTGMESLIIIPVSKAQALQRR</aaseq>

Gene Sequence

<dnaseqindica>280..335#442..491#584..664#1176..1392#2534..2921#3144..3347#4488..4652#gacggcaagacggcggcgcgtggcggcggcgagacccatcgagcggcggcgagccgacgagggagcgaccaccacggccgtgggggagcacggtacgaggtgaagcggcggctgcggcgaagtagttcgtactcgagccctagtcccgacctccaggccgaagcgaaagcactccggcgcaaagagggggcctcggggctccggctagccagcgaccgaccggcggccaccgtggcgggattcaggagagctcgggactccgccgccgcggcgtccgacatgccgtcgttcccttcctccggcgcttctccgcagaagcagcagcacaacgccaggtgcgcgcacacacccctcgcccgcagcctgcctccccgcggcttcgtttctctctcgctctagttcgtttgcgtgggtgttttgactggtacgggtggtgggcaggaggaggcagctgattcggcagcagaggaagtcgctccccatcgcctcaggttagtcggagcatatggggttttgggctgtgattttggggttgtttagttaagttttacatgagttaaatttgttgctgatgatggtgcagtggagaagaggcttattgaagaggtgaggaagaatgacacgttgatcgttgtcggcgagaccggaagtggcaagacaactcgtaagtttgttgctgcattttgcttttatcatcacacattattgcctattgctttgtgaggcttgcggtttttagtttgtgtaggccagcaactattatgccacattgtattactcatatgcttgttgaagtggtatgtgctagtggcttgtggagtctggaacattgccacattggcaaaatcgttcttgttcagccaaccaaaggagtatctgtagtcagttctcagctaaatttgcgttaaagaaattctaaaattctattcccctaatctcagtggattgttgtgcactagtgtgtttggtccttaggaagattgtttgtgtggatttttttttgtcaataactgtcaaaatttctttatttggtttattttaaggagcatatcatcattggttattgtagaaacatttaacgttacctaatcatttattacataatctttatgccatttatttcaacctagccgactgacgaagcacatattcttgtgcattttattcttatgcagagttgccacaatttttgtatgatgctgggttttgtcaggatggaaaagtcattggcataactcagcctcgaagagttgcagctgttactgtagcaaagcgtgttgctgaggaatgcaatgatcagttgggcaaaaaggttggctattctattagatttgatgattcgacatcaaatgcaacgaggattaagtacatgactgatggtttgcttttaaggtaatattatatttacggaactattaattatttgattattgtgcggtttattgttttatgtagttctttgattccagctcatatactagtttctgtgttatttggaatctgggcatagcagttgccatatactctgtctctggcttgattgttgaaccaaagattatttcttggacaaaagggatacgcctggctttgctgaaagcataacaggttctacagaaaatttgctgggcatgccagcttgattacaaaccgcaaagcacagccatctaactgttaatgctaaactaaaacatagaagcaaaaatgggccaacattccccatgaacagacatgaaccgaagattattagattcacatatataagaaaattgttccacctatttttttcaagggatacaacactgaatttctgtatcaaggatgatggctgcttgcttatgttttttctattatgttcatatcataaaaagtcatttatgagttagaattggtgcaagtaaagaaaaacaacggctggatatacatatttgatgtcacagtttggtggcactgataatcctttagatatccaagcatttttctcatatatttaatattttgtagcagtaggcatccttacatctgcattagtatagttcatttatcatttaattattttcttcagagctaaatatgtacctttttcaatcttttttttgttgcttttgtactttgtagattttaatgtgtgaccttttcttttttcttatattgcttttttttttagaaaaatcaataaagttcaatttaactactacctccgttttttaatagatgacaccgttgactttttctcacatgtttgaccattcgtcttattcaaaaattttatgcaaatgtataagatataaatcacacttaaagtactatgagttataaaacaactcataacaaaataaattataattacgtaaattttttgaataagacgaatggtcaaacatgtgagaaaaagtcaacggcgtcatctattaaaaaacggagggagtatatgttatcatgttacagatggctaagtcttctttatatgtatcgcttttttgttcttctatgtcaatttctctttcataataaaagtgttcccttggatttgcagggaggcacttctggatccacttttgtctaagtatagtgtcatagttgttgatgaggcacacgaaagaactgtacatactgatgtcttgttgggtttgctgaaaaaagtgcaacattcccgatccatttatgccaataagaatggaaagattttgcctgacatacaacatcagtctcaatattttactctgaaggcatgccaaggaacaaaaattgatcctctaaaactgataattatgtctgctagtttggatgcaaagtgtttttcagattattttggcagcgctaaagctgtacatattcaaggacggcaataccctgttgacatactatacacttatcagcctgagtcagattatctggacgctacactagttactatctttcaggtgagcatctcttgtaaaaggtggatgaattaggcaggagaattagaaattgaaatccacacaaaatatgatttcagaaagaaaaacttttgtcagaaaacattataagtgatatgcaatcttagctggaactatgtttcatattactgttgtttcaactatgacttgatatagtcagttcattgtataaaaacttcatactgaaatgttttctttttatagatccatttggaggaaggaccgggggacattcttgcatttcttactggccaagaggagattgagtcactggacagacttattcaggagcgtgctcgtcaacttccaccacagagaagtaagatatggactacacctatttactcatctcttccatcagagcagcaaatgaatgcttttaagcctgcaccagctggaactcgcaaggtaaacctaatatattacattttttggatgtttacttcaaaggtgtaaatcgcaatttttgtagaatgatcccagaaagcaaatagcgcttgatgacctgcaatttaaaatcttgctggcttgcttacaatctatattttctttaccgatgagttcttcaactgctactctttatgcctgatgttccttctggacataacttactggtggggttgaataggttgtttctaataagcaaaaccatacttcattagagtatgcagttgcaagttgggagagcattggaacaatgtgttgtcagatatacgtgtgaccatatttatgcatgttgatagcgatgcaaattaattactaatacccaaagtgtacatcattccaagatgccatatgaattatgaactatactctgatgatctgccgaaattatttatctgcagtaaataaaaatagttgcaccttctaaacaaaaattatattaatccatttttcaagtttgtttaggctaatacttaattaatcttactataattgtgtgcttggttttccgtgttgggaggcaaggttcccaaccttgtagtattatacaatttgtcttgatgttgattattccctgaagaagcataagtgtaaacttatgaggaattaagcatacaagggaaatgatttcctgtataggctgtcattcgctcacttctctgttgcttaagaaaactaagtactccctttgtcccataataagcaacttttagcattcaaaatttgtcccataatatagcaacttctccacctaccccctcatctcaaccaattacaaccatctcccatttaattttttcacctacttcctctggtcaaccaatcacgaccttcctgcatttaattccacctacttaataacatgtacctaactccaaaaacaatatttttggacggagggagtagattttatgggaaaagttcatgttggaatattatttatttttttagctgtgtttaccttttgaatcttatggtaattattctaggatattgggctttcctgataaatattacttgtcaagaaaacattacccccccccccccatccttgtaaaatggtaggttcgcagcattaactgatgctcaactcgtttctgtcaggtggttttagcaacaaatattgcagagacttctgtaacaatacctggtatcaaatatgttattgatcctgggatggtcaaagctcgtgcttataatcctgtaactggaatggaatctctgatcattatccctgtttcgaaagcacaggctcttcagaggaggtaaatacttttaagcatttgtaaatcacgtgtgcctttttctcttaccttgtgatctatattcagtggccgtgccggacgagagggaccagggaagtgctaccgattgttccaagaaagtgagtttgataagctggtggattctactgtgcctgagatcaagcgatgtaaccttgcaaatgttgtactacagctcaaagctcttggaattgatgacatcataggttttgattttatggagaaaccatcaaggtaatctgtttttttttctgttcttttaatcttttacatgcaaacaacaatatgctctgggcttctcagtattcactctactttaatagcaagctgctttatttggtaactaagttttcactattttgtgtcaaacctactgcaggacagctattttgaaatcattggagcagttaattttattaggtgctctgactgatgattataagttgtcagatccagttggtcgtcagatggctaggctacctttggatccaatgtactccaaggcactaatagtagcaagcgaattcaagtgcttggaagagatgttgattgttgtctctatgctttcagtggaatctattttcttcagcccacgtgagaagttagaagaggtattatattcgaatcctgcgaatgattaaaccacaaagtgttcttatttgagattatgttggtactggtatattccagttatgctattcgatccaagtttactcttcttgcaataccaggcactaaatgcctttaaggttctaggttattgctgattaagaaatacattgcaccaaacatatattttataaacacattttaaagtctaatgaacactctatactgtcattatacaagctttggacaaaccagaacattatttaactcaacactgctatacttgtctcgtccatctttggatggagcagagttcacccagttcacccagttgtgaacttgtgataaagatagcagtttatttagttatgttgtggaatcttttactgtgaaatccttttgaagtaccttaagacctgaaattatcatgatttgtcatttgcgtattgacaaggaaaactaacatacaacatgtattttgataggctaccactgttcggtgatgataaagaacttcagtttgttgctaactaaatagttcacttattgatcccgaattcttatgtaggcaagagctgctaggaagagttttgaaagctctgaaggggaccacataaccttggtgaatgtatatcgagccgctaaagaatgcttggagaaaagcaaaaatgcaaatgccaaagagaaaacaatggaaaaggcattgaacagatggtgcagggaaaatttcatcaattaccggtctctaagacatgcttgtgatgttcacaggttagtcaaaatattgttcttgatggattcatgaaaagcttgaactatcaactcaactgtgaaaaagatggctagccggagccctcagggtgtcttagcaatgctgcactgatcacaaagcatggcactgtattgtatttgtagcattagcacttgaactatctgtggttgaagaaacatttcaccttatattaacatttattttaggaccattggaaaatattcaaaatttcaaattaacctgacatgttagactttaagaaatgaaaaggaacaaaattctatctcgtaaatttcagagtatggtgcgagcttgacataggtatttttgtttgttgcagccaaattcagggccatgtccaacaaatggggcttaacgtatcatcgtgtggggatgacatggttctgttccggagatgcctcacagctgctttcttcttgaatgccgcaatgcgacagccagatggatcatacaggtattactacggttttcctctttttcttgatctaaataactcatcctaactatcttttcctgcactgaaatccaagactaccgctacagactaaagttactgcacacttaatagagagttcttttgttgaagctaatcactaacctgttgattggcagggctcttgcaaccagccagagcgtgcagatccatccgtcatcggtgctcttccaaaagaagccagattgtgccatcttcaacgagttggttcgaacgagtcagaattacgtcaaggacctgacccggatcgatcccgtgtggctggctgaacttgccccgcaatattacgccactgaggattgattttgatctgctgccatagttcactgtaaccttgtaaacaccagagtctgcttagttaatcacagtgtcctgtcctggcactactcactagtgtggcgttcaaagctgtgaaacactcatgtctttgtttgaaagaaagctagtctcagttttgatctccgactgcatgctgaaatacatgatggttacagttctagcccaaacgggtgtgagagagactgtttgcgatagtcataaatcagagggtgggtaaggagatttcagatagaactagaagatggtttccttctcattgaagttttatccatcagaggatcttgg</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0192500, RefSeq:Os06g0192500