Os06g0196900

From RiceWiki
Revision as of 09:08, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0196900| Description = Similar to 20 kDa chaperonin, chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperoni...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os06g0196900

Description

Similar to 20 kDa chaperonin, chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperonin 10) (Ch-CPN10) (Chaperonin 20)

Version

NM_001063590.1 GI:115466911 GeneID:4340394

Length

4520 bp

Definition

Oryza sativa Japonica Group Os06g0196900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:4932951..4937470

Sequence Coding Region

4933545..4933715,4933816..4933995,4935329..4935484,4935644..4935721,4937105..4937179
,4937280..4937285

Expression

GEO Profiles:Os06g0196900

Genome Context

<gbrowseImage1> name=NC_008399:4932951..4937470 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:4932951..4937470 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgtcggtgcagctctccggtgccggagtcgccgcggtggccttcaccaagaatggcgcgtcttccttcgacgggctccgcctcgcgccgccatctgtgcgagtctgctcctccaggcgcccgtctcgtagcctcgtcgtcaaggccgccacggtcgtcaccccaaagtatacctcgctcaagcctctgggagacagagtgcttgtgaagcttggtgctgcagaggagaagactgttggtgggattctgcttccgtcaaccgcacagtctaagcctcagggaggtgaggttgttgctgttggagagggaagaactattggggataagaaagttgaggtcagcttgcagattggggctgaagttgtatattcaaaatatgctgggactgaggtgcaatttaacgacaccaaacatcttattctaaaagaggatgatatcattggtgttcttgagactgatgatgtcaaagatatgaagccccttaatgaccgggttctcatcaaggttgctgaggctgaagacaaaactgctggtggccttattctcactgaaaccactaaggagaagccatcaatcggaacagttgtagccgttggtccaggccctcttgatgatgaaggcaagaggcagccattgtcagtttcagcgggcagcactctgtga</cdnaseq>

Protein Sequence

<aaseq>MSSVQLSGAGVAAVAFTKNGASSFDGLRLAPPSVRVCSSRRPSR SLVVKAATVVTPKYTSLKPLGDRVLVKLGAAEEKTVGGILLPSTAQSKPQGGEVVAVG EGRTIGDKKVEVSLQIGAEVVYSKYAGTEVQFNDTKHLILKEDDIIGVLETDDVKDMK PLNDRVLIKVAEAEDKTAGGLILTETTKEKPSIGTVVAVGPGPLDDEGKRQPLSVSAG STL</aaseq>

Gene Sequence

<dnaseqindica>595..765#866..1045#2379..2534#2694..2771#4155..4229#4330..4335#agctcctctttcgctttagccgcagctgcttcgctctgctttctccgtagggtttatccctttgcttctcctcgtctccctccccctcgcacgcaaaggcacaaagcccggattccaccgccggagccgacccgcttcgaggcgaatcgagaggtacgggtgctgggatacgtcgccgatgttttccggccgttttgggggggggggggggggggatttcgggggtgtgtggtgtttttcgggcgggtgggtgtttgtacgatttgatttcgtttttgggttgtttttggtgttgaattcgtggatttggttggaggattcgggctgaatagtgggttggtttgggtgggtttccctaaatttggtcgaatcgagtattcgagtgaggagtattgttggcgtctgatttggggaggtgttgacttgtgcatccccctccaaaaaaatggataaatttacagtcgtcttcgttcagatttggggactctgttctcatatagattaatgggtagtatggcagattttgccacaaattttgagttagttgataagtccttgccgttgcgcagttagctttccagccagcaatcgaggatgtcgtcggtgcagctctccggtgccggagtcgccgcggtggccttcaccaagaatggcgcgtcttccttcgacgggctccgcctcgcgccgccatctgtgcgagtctgctcctccaggcgcccgtctcgtagcctcgtcgtcaaggccgccacggtcgtcaccccaaaggtatacagaggtgttaagcttcccaattatctgtagattatggcgagcttggttatggttagcatgagtgagttaacgaatttcgttgttcgcatggcagtatacctcgctcaagcctctgggagacagagtgcttgtgaagcttggtgctgcagaggagaagactgttggtgggattctgcttccgtcaaccgcacagtctaagcctcagggaggtgaggttgttgctgttggagagggaagaactattggggataagaaagttgaggtcagcttgcaggtaaagttcttctcacaatgagattgcaagtgtacctgtatgatgtctagtactacatttcttaccccatagctcggttgtgagttgcaagtagcagtgacacggcaatttacttgttggttgttgccaactaaatttaaaagcatattgtgtgtgatgccttatcaagaatgcgatgttaatggtgtacggggtctgtgaggctgaagtttctatggcacaaaactcatgtgaaaccaacagaggtttctcatgattgctttatgactgttgttcagagtatgcaacactgatatattttgattgttagtttctggtttggttaaacatatgaatccacgtaaggagtatcctttggcaatgggcaaatatgtatgagcatttgcttaattttgtcatccatacaaatagatgttgttagtctttcatagcactaggagagtaggaggtggtgcatatgacccgggtttgagaaacaacagaaaaccgggaaaaaagaatcgctcaaccctttttttttaaaggactggttcactccctcatgttggtattactagcaacttccatggagaacatttatttagttagtgcctggtttacaagtccaaacccatgatgttttggcatctccatccctcaactagattcactaatgtacatatgaatttggacacatatatgaagcacatacatgaatctattcaaaactcaaaacgtcttataatgtgaaacaaagaaagtaactaggtaaagcggcttctgaggtaatgctgtgtgacttgtttgtttatagttatcttgttgaacagggtacaatttgttctgactgatgggcgaaaaaggctttcaatctctgtttttttttcttagatgcaccttgcaactttatcttggttcctgcatgacaataattgtttgggttcatcatcttgtctactggaaatgtctctaagataaggtttagattggtgaaaaatttactgatagtgatgcttgttacaggaccttagattggtgaaaaatttactgatagtgactcttgttacaggaccttggttattttcatttgttgtgtaactagttttcacttaacttgaatttctgcaaggagatactacattagtaaacttaatttagacaatcatagcgattggcactacagagagcctactgttgaatttcagtgcagcaattgtgctatatattacctgatgaacttggtgcaataagatgttaaagtgccaatctgccaatttgttctgttgcttttatgttgtggtttactgcttatgccttctaatggcagtattaagtgatttatattgttctgtagattggggctgaagttgtatattcaaaatatgctgggactgaggtgcaatttaacgacaccaaacatcttattctaaaagaggatgatatcattggtgttcttgagactgatgatgtcaaagatatgaagccccttaatgaccgggttctcatcaaggtatccatatgttattgttattgcttcttaagatagttgccagtagggttatggtttataggtaatgaaattggagaatgttgaataaattgtacatcttgccgttgtacttcctagacaacctttggtaatgattccctgcttttgtaaatttgacaggttgctgaggctgaagacaaaactgctggtggccttattctcactgaaaccactaaggagaagccatcaatcggaacagtaagttcttaccattgtctctttaagccttgttattgttattctattgctgtgaacctagattgttgggctatatgcaaagatttgtgcatgtactgagccaagcgagaaaatggacatttagccactttcaagaagtggtttcgctgaaatgccattccgaaaacgcgtttcgctaaaatgccaatatgtagcgtgcactcaccgccacttgccattttggccattttgtgcattttcaattgcattttcgctggaatgtggcttgatgggaccaaattgcccttgctcgccggttgaaaggggatcgatccagttcatgggaggaaagaggacgagtgcggcgaggtagtctgcgtggccaaaatggaggaggcggtgagcgaacgcatggcggcggcggtgatgacggcgacacgggcatggcgacgccgcagcgaagggagacgcacggcctccacgccgtcgcggacgacgccctgtccgctgacgaagaagctgacgacagacggccatgaccatctccaggatgccgaacccccaccctcaccagcgcgccgatgtcgatggccaggatgcttgacgaggtggaggtgaggtcgtcgaggtggaggacccgacgacgcttgtagacgaagcggcggcggcggcggcggcgtcctcgaggtcgagcgagtggaggacctggcagcgcttgtagacgaagcggcggcagcagcgtcctcgaggtcgggcgggtggaggacccggcggcgcttgtagacgaagccgttgcagttgcagatctcccagtcctcgttgccgtcgccgccggcggtggaggcgtactaaaatccatgcgctctctctcctctctactctctctttttcgctgagattgatttcgcttgctgtggcggctgggctctgatccgtcgatccgtgcgctcgccggaggaggaggaggatttggggtgtgtgtgtgtgcacggcggtggcgcgcggcgggatgatgctggcggggcacaagttcaggaaggggaagaaggcggtggaggaggaggtgaacgggttcttcatggaggaggaggaggaggtagcggtgtcggacgcgtcgtcgatcgggatggcatcgtcggacagctcgacgggagaaatcgtcgtcggagaaggaggggcattctcgtctcttcaagccgcttcccagagaaaatgatatccaaaatggtgaaaatggcaaagtagctgtgatggcgcactccatattagcattttagcgaaacacgttttcgggatggtattccagtgaaaccatgttttcaaagtggcaaaatgtccattttctccagccaagctgaactgaatttgcatgagttttacctgtttattaccttctgaatgcaggttgtagccgttggtccaggccctcttgatgatgaaggcaagaggcagccattgtcagtttcagcgggcagcactgtgatgtactccaagtacgcaggcagtgagttcaagggagctgatggcaccaactacattgtcttgagagtatcagatgtgatggctgtcctatcttgagctgtgatttgtttcaattttgagttcagaatagacggtagcaggtggtaatggttgccatgtggtgatcttcactctgcggagatgctgtctttgataatcctagaattcgaacgcaacaatttgcagatctcctacgggatcaacattccactgtgactgatttttatttataaaagtttgttttgtttc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0196900, RefSeq:Os06g0196900