Os06g0199100

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Revision as of 09:08, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0199100| Description = Protein prenyltransferase domain containing protein| Version = NM_001063600.1 GI:115466931 GeneID:4340404| Length = ...")
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Gene Name

Os06g0199100

Description

Protein prenyltransferase domain containing protein

Version

NM_001063600.1 GI:115466931 GeneID:4340404

Length

7673 bp

Definition

Oryza sativa Japonica Group Os06g0199100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:5026687..5034359

Sequence Coding Region

5028464..5029000,5029623..5029713,5030552..5030752,5030833..5033678,5034156..5034332

Expression

GEO Profiles:Os06g0199100

Genome Context

<gbrowseImage1> name=NC_008399:5026687..5034359 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:5026687..5034359 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcctctcatggccgtcgcctcccaacccttcctctccacctccacctccacctcctcgcgccatatccgccgcgccaccgtcgccacggccgcggccgcggcgccggatgatttcgactaccccctcgccgacccctccgtccgctggccacacctccgcttcccccacctccccaccgtgcaggtgttcaatgccatgatgggcgtctacgctcgttctggccgcttcgacgacgcgcgccagctgcttgacgcaatgcgtgaccaggacatcgagcctgacctcgttagcttcaatacccttatcaatgccagggccaagtctgggtgtttggccgctggtgtcgctcttgagctcctacatgaagtccggcaagctgggctgagaccggatgctatcacttacaacaccctcatcagtgcttgctcacaaggttctaatttggatgatgcagtggcggtgtttgaggagatgatagcttcagagtgtcggccagatttgtggacgtacaatgccatggtctccgtgcatggccggtgcgggaaggcacaggaggctgagctgatgtttaaggagctggttgagaagggttttcagccggatgcagtcacatacaactcgctcctttatgctttcgcgaaggaaggcgatgtggagagggtggagcgtgtgtgtgaggaattggttaaggctggtttcaggaaggatgggattacttataataccatgattcatatgtatggaaagatgggcaggcttgacttggcgcttgggttgtatgatgagatgagggctataggctgcactccagatgctgtgacctatactgttttggttgattctttagggaagatggataggatttctgaggcagggaaggtgctggaggagatggctgatgcaggattaaagccaactttggtaactttcagtgctttgatatgtgcatacgccaaaagtgggaggcaggatgatgcggagcgtacatttgatcgtatggttgagtcaggtgtcaaacctgatcgtttagcctatttggttatgttagatgtttttgcaaggtctgatgagactagaaagctgatggttctgtaccgggctatgatcaaggatggatataagccagatgatggtttatatcaggtcttgcttgctgcactcgcaaagggaaatgaacacgatgagattgaaggagttatccaagacatggaggccgtttttgaaatgaatccactagtaatatccagtatactcatcaaggctgaatgcatttctcagggtgctagtctgttaaagagggcatgcctccaaggatatgagcctgacggtaagagcctactgtccattttagacgcatatgaaaaaatgggtaagcatgaaaaaggtctctctttgcttgaatggatccggcagcatgttcccaactcccacaacttaatatctgaatgctcgatcatgcttttgtgcaaaaatgggaagattgttgatgccattcaggagtacagtagaaaacaaatgttaaaacgtggatcctttggtcaagactgcgacttgtatgagtacttgattacttaccttgaggaggctgagttatttcccgaagcttgtcaagtgttctgcgatatgcagtttcttggcatagttccttcccaaaagatataccagagtataatttacacatgctgcagattgggtttcccagaaacggcttatcaattgatggatgatgctgcgcgatctgatatttccttgaacattctttcatgcagagtagcaatgattgaagcgtatggtaagttaaaactctggcagcaggcagaaaattttgtgaaaggattgaagcaggagtctggtgttgatagaaggatttggaatgctttaatacatgcatatgctgagagtggcctttatgagcatgcaagggcaatctttgacattatgattaaaaagggtcctctaccaactgttgaatcagttaatggaatgatgagagcattgattgttgatggcaggctggatgagttgtatgtggttgttcaggagcttcaagatttagacatcaagatcagcaaaagcacagtactccttatgcttgaagcttttgcaaaagctggggatgtattcgaggtaatgaaaatatataatgggatgaaggcagcaggatacttgccaaatatgcacctctacagaattatgatctccttgctctgccataataaacgattcagagatgtcgaattgatggttgcagagatggagggagcaggattcaaaccagatctcgtggtacttaatacccttcttttaatgtatactgggacaggaaactttgacaggacaatagaagtatatcatagtattctggaagctggattagagcctgatgaggatacatataatactcttatagtcatgtacagtagaaactttaggcctgaagaaggttttactctcttgtatgaaatgggtaaacggggtttgacacccaagttagaatcctacaaaatcttgcttgctgcatctggaaaagctaaactctgggagcaagctgacctgctttttgaagaaatgagaacaaagggatatcggttaaatagatctatctaccacatgatgatgaaaatatataggaatgcccgcaaccattccaaagccgagcacttactatcagcaatgaaagaggatgggattgaaccaaccatcgctactatgcatatcctcatgacttcttatgggacttctgggcacccagacgaagctgagaaagtcctgaacagcttgaaatcttctaatttggaaattagcactttaccatacagtactgttctcgatgcttacttgagaaatcgtgactacagtcttggaatcacaaagcttttagaaatgaaaagagatggtgtagaaccagatcatcaagtctggacaagtttcatcagggctgctagtttgtgcgagcagactgatgatgccattcttcttctaaagtctttgcaggattgtggatttgaccttcccattaggctccttactgagaggacttcgtctctgtttactgaggttgacagctttctagaaaaacttgggacactagaagattctgcttcattgaactttgtaaatgcactggaagacctgttatgggcatttgaacgtcgagcaaccgcttcatggattttccaattggctgtaaaaagaagcatataccatcataatatctttcgagtggaagaaaaagattggggagctgacttacgcaagttgtctgctggggctgctcttgttgctctaacattgtggcttgatcagatgcaagatgcttcactgcagggtgcaccagaatcccccaaatctattgtattggtcacaggagagggggaatataacatggtatccttgcgtaaaactatcagggcttaccttttggaaatgggctcccctttcctaccatgcagaagtcggtcaggtcgctttgtggtgaaggcttactctcttaagatgtggctgaaagactctcctttttgcctggaccttgagttgaaagatgctcccgctcttcctaaaacgaactcaatgaagcttactgaaggatatttcatgagagccggtcttgtacctgtatttaaagatatacatgagcgacttggagaagtatggccaaagaagttttccagactagctctattgtcagaagaaagcagggatgaagttattaaagctgatataaaaggaaggaaagaaaaattggagaaaatgaaaaaacagggtcttgccatagcaaagagatctaaaagagggcctcggagagggaaatttgttaaacaacaaagcacacaggaggttctgaagtag</cdnaseq>

Protein Sequence

<aaseq>MPLMAVASQPFLSTSTSTSSRHIRRATVATAAAAAPDDFDYPLA DPSVRWPHLRFPHLPTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTL INARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMI ASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGD VERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTY TVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRM VESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGN EHDEIEGVIQDMEAVFEMNPLVISSILIKAECISQGASLLKRACLQGYEPDGKSLLSI LDAYEKMGKHEKGLSLLEWIRQHVPNSHNLISECSIMLLCKNGKIVDAIQEYSRKQML KRGSFGQDCDLYEYLITYLEEAELFPEACQVFCDMQFLGIVPSQKIYQSIIYTCCRLG FPETAYQLMDDAARSDISLNILSCRVAMIEAYGKLKLWQQAENFVKGLKQESGVDRRI WNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGRLDELYVVVQE LQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHN KRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDED TYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFE EMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGT SGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLEMKRDGVEPDH QVWTSFIRAASLCEQTDDAILLLKSLQDCGFDLPIRLLTERTSSLFTEVDSFLEKLGT LEDSASLNFVNALEDLLWAFERRATASWIFQLAVKRSIYHHNIFRVEEKDWGADLRKL SAGAALVALTLWLDQMQDASLQGAPESPKSIVLVTGEGEYNMVSLRKTIRAYLLEMGS PFLPCRSRSGRFVVKAYSLKMWLKDSPFCLDLELKDAPALPKTNSMKLTEGYFMRAGL VPVFKDIHERLGEVWPKKFSRLALLSEESRDEVIKADIKGRKEKLEKMKKQGLAIAKR SKRGPRRGKFVKQQSTQEVLK</aaseq>

Gene Sequence

<dnaseqindica>5360..5896#4647..4737#3608..3808#682..3527#28..204#tgcgcgactgatccgccgcccaacgcgatgcctctcatggccgtcgcctcccaacccttcctctccacctccacctccacctcctcgcgccatatccgccgcgccaccgtcgccacggccgcggccgcggcgccggatgatttcgactaccccctcgccgacccctccgtccgctggccacacctccgcttcccccacctcccctcgcctcgcttccccgccgcgcccgtggcgaggccctcggagggaggagaggaggaggaggcggcggcggggccctcgtcggccgccgcctccgccgccgccctcgagccgctcgacgcgcgggcgcaccgcgggagggtgaagaagctcagcaagctcgcgctgcggcgggcgcgggactggcgcgcgcgcgtcgcgggcctcgcggaccgcgtcctggcgctggcccccggcgcgcccgtcggggacgtgctcgacggcgcgcgccccgcgccggacgagctcgcgttcgtcgtgcgcgcggtgggggtggcgtcctggcggcgcgcgctcgacgccttcgagtggctcgtcgcgagcggcggcgggcgtgccccgggcccccgcgtcgtcgccgtcgtcctcggcgtcctcgggcgcgcccgccaggacgcgctcgcggaggatgtcttcctccggttcgcccgcgagggtgccaccgtgcaggtgttcaatgccatgatgggcgtctacgctcgttctggccgcttcgacgacgcgcgccagctgcttgacgcaatgcgtgaccaggacatcgagcctgacctcgttagcttcaatacccttatcaatgccagggccaagtctgggtgtttggccgctggtgtcgctcttgagctcctacatgaagtccggcaagctgggctgagaccggatgctatcacttacaacaccctcatcagtgcttgctcacaaggttctaatttggatgatgcagtggcggtgtttgaggagatgatagcttcagagtgtcggccagatttgtggacgtacaatgccatggtctccgtgcatggccggtgcgggaaggcacaggaggctgagctgatgtttaaggagctggttgagaagggttttcagccggatgcagtcacatacaactcgctcctttatgctttcgcgaaggaaggcgatgtggagagggtggagcgtgtgtgtgaggaattggttaaggctggtttcaggaaggatgggattacttataataccatgattcatatgtatggaaagatgggcaggcttgacttggcgcttgggttgtatgatgagatgagggctataggctgcactccagatgctgtgacctatactgttttggttgattctttagggaagatggataggatttctgaggcagggaaggtgctggaggagatggctgatgcaggattaaagccaactttggtaactttcagtgctttgatatgtgcatacgccaaaagtgggaggcaggatgatgcggagcgtacatttgatcgtatggttgagtcaggtgtcaaacctgatcgtttagcctatttggttatgttagatgtttttgcaaggtctgatgagactagaaagctgatggttctgtaccgggctatgatcaaggatggatataagccagatgatggtttatatcaggtcttgcttgctgcactcgcaaagggaaatgaacacgatgagattgaaggagttatccaagacatggaggccgtttttgaaatgaatccactagtaatatccagtatactcatcaaggctgaatgcatttctcagggtgctagtctgttaaagagggcatgcctccaaggatatgagcctgacggtaagagcctactgtccattttagacgcatatgaaaaaatgggtaagcatgaaaaaggtctctctttgcttgaatggatccggcagcatgttcccaactcccacaacttaatatctgaatgctcgatcatgcttttgtgcaaaaatgggaagattgttgatgccattcaggagtacagtagaaaacaaatgttaaaacgtggatcctttggtcaagactgcgacttgtatgagtacttgattacttaccttgaggaggctgagttatttcccgaagcttgtcaagtgttctgcgatatgcagtttcttggcatagttccttcccaaaagatataccagagtataatttacacatgctgcagattgggtttcccagaaacggcttatcaattgatggatgatgctgcgcgatctgatatttccttgaacattctttcatgcagagtagcaatgattgaagcgtatggtaagttaaaactctggcagcaggcagaaaattttgtgaaaggattgaagcaggagtctggtgttgatagaaggatttggaatgctttaatacatgcatatgctgagagtggcctttatgagcatgcaagggcaatctttgacattatgattaaaaagggtcctctaccaactgttgaatcagttaatggaatgatgagagcattgattgttgatggcaggctggatgagttgtatgtggttgttcaggagcttcaagatttagacatcaagatcagcaaaagcacagtactccttatgcttgaagcttttgcaaaagctggggatgtattcgaggtaatgaaaatatataatgggatgaaggcagcaggatacttgccaaatatgcacctctacagaattatgatctccttgctctgccataataaacgattcagagatgtcgaattgatggttgcagagatggagggagcaggattcaaaccagatctcgtggtacttaatacccttcttttaatgtatactgggacaggaaactttgacaggacaatagaagtatatcatagtattctggaagctggattagagcctgatgaggatacatataatactcttatagtcatgtacagtagaaactttaggcctgaagaaggttttactctcttgtatgaaatgggtaaacggggtttgacacccaagttagaatcctacaaaatcttgcttgctgcatctggaaaagctaaactctgggagcaagctgacctgctttttgaagaaatgagaacaaagggatatcggttaaatagatctatctaccacatgatgatgaaaatatataggaatgcccgcaaccattccaaagccgagcacttactatcagcaatgaaagaggatgggattgaaccaaccatcgctactatgcatatcctcatgacttcttatgggacttctgggcacccagacgaagctgagaaagtcctgaacagcttgaaatcttctaatttggaaattagcactttaccatacagtactgttctcgatgcttacttgagaaatcgtgactacagtcttggaatcacaaagcttttagaaatgaaaagagatggtgtagaaccagatcatcaagtctggacaagtttcatcagggctgctagtttgtgcgagcagactgatgatgccattcttcttctaaagtctttgcaggattgtggatttgaccttcccattaggttgatattgtacttgattatgttcataatgttccgtattttttttcttcatcagtgattaaatcttacaccttctgcaggctccttactgagaggacttcgtctctgtttactgaggttgacagctttctagaaaaacttgggacactagaagattctgcttcattgaactttgtaaatgcactggaagacctgttatgggcatttgaacgtcgagcaaccgcttcatggattttccaattggctgtaaaaagaagcatataccatcataatatctttcggtatttgcaacaatctctaactccgaagattttcatttgaggctatgctctattttcagattcagcatgccagatgcagcatttccagtttacttgaccattataggtacccactagcagagttccacttttggttcacatgcacacctgtgcacacgaagaagctgataaattacagtgacttcgtgaacaacattaattgcaaaataagtgagccagaaaatccagccataagatacattgatgttttatttttatttttttaatctggacattcaagagctataaaacaagtagttagcttataacatgtttggcccacagatggcccagacaggcaactggctagcaatatgagtctaggtgtcatctcaaagagtcaatctgctatagtattcttacattggtgtgttcttcaacactaggatagctgaaacgtttgactaacatggtctggtcttattttttgcttcgttttatttgtatctgttggaacaaattgtcccaacaacatggcagggaccttcctcttcgtgagaggaagtccttgctagtgaacagtagaggggaggagagcatgagggtgaggatgacagtccatggatggaatggatggggatgaggacaatatctgatgattttttatgatacttggccttaccttgatcttttaggggactttccatttcttcacatgcctttgtttatgagttgaaattgcttacgtaattctagatgactaggtttaatttccttatgattatgagtattggtaaatccaaagcggaacgattgtttctactgtattgattaatcattttcttggtgaatggctcagagtggaagaaaaagattggggagctgacttacgcaagttgtctgctggggctgctcttgttgctctaacattgtggcttgatcagatgcaagtaggtcttaaaaataatattaatttttatatggtgttgcattagttgattgaaagagaccaaatcaatgattaaaaacttgttttgagtggagaaatagtaaagtttgttcactagctttacttatagtgtattgtttttttgccattgtcatgactatggacagtacagcacacacttttgagtcaaatgaactataaattaagaagaatgaagtgactacagacaagtaaaatgtgtggaatgtaggctatttatctcagttgtagtgtctaatgcatttctacctttgtttgacattgtatgcaattttcacgtagagaatcgtgataggttttgtgacagtaacatgatgaagcattgtcctccttttttgctagtctatcggcttgaagcacaaattaatttttgtccatatcgagggcacaaatattgttgaatctaccaattggcggcaacctgaatattcccctaaaaagcttgaatggttgtattgcgaatgaatttaatacgtatcaagttttcctttatagctaatattttgtttggatgggcttttgttttgttgatttcttaactctccctttttaaacattacatctgatatactctgcttgtataggatgcttcactgcagggtgcaccagaatcccccaaatctattgtattggtcacaggagagggggaatataacatggtatccttgcgtaaaactatcagggcttaccttttggaaatgggctcccctttcctaccatgcagaagtcggtcaggtcgctttgtggtgaaggcttactctcttaagatgtggctgaaagactctcctttttgcctggaccttgagttgaaagatgctcccgctcttcctaaaacgaactcaatgaagcttactgaaggatatttcatgagagccggtcttgtacctgtatttaaagatatacatgagcgacttggagaagtatggccaaagaagttttccagactagctctattgtcagaagaaagcagggatgaagttattaaagctgatataaaaggaaggaaagaaaaattggagaaaatgaaaaaacagggtcttgccatagcaaagagatctaaaagagggcctcggagagggaaatttgttaaacaacaaagcacacaggaggttctgaagtagtatttgctttacttagtgtcagatttgcctacatcagtgagaagcaatggtgatattaccgtggtgttcattgctcacattaggtagtgcgatcgaagtttgttctttagagaacatagtatttgattgtttcatccgaggttagttgatcgcagttgattggacagctcatatgggaatgatgttctatcatgtcattttctacaatgtctaacctacaactttatggcttcatataaaatttgtatagtttctttgcagagatgaacaaatggtgaagatagcatatttcactctgtgacactgggatgcaaaacaacaaaacctcacgtgatattttaagtaagttctttcatgtttcaattggtaaagatactttaatttcaaaattagagttgtatttgatgcactaattcaaactggtaaaaaaactgctttgttcttgtctcacagattttattggtgatttgataacgcagaagatctgatatattattcctccagattgtgtgagcatgttgctgcctgatgggggtgaatgaaaccagcttagtataaacccctgcaattcaattattcttgcttatctgttgcactcatgcactaatcttgtcaggaacatgagatacattgttacatgacttcacatcacatcacacgactatcaggtgaggctttatctatgtaggagttttaattggcttgaaacctaatttttgcttgcttcttttcttattacaagcctttctttccttatgcgttgtagtgcgggttaagctggtgttattaactatggtgatttcattggttcgtgcctctatggtaagaaacatattgattatgaagatttttcttcggtcaatgacctgataaagaagaagagtgcttgtgatgtgtaattctgatatagacatctagttcttcacagtagtttaatttcatattggagaacataggacaaaaattctttacaagatagtttctagttgaccatgtgaatagtttctagttgaccatattaactatactgttctgttacttattaggaccctgtcgctatatatgggagaatcattcatttccattttccaacaatagatataaatctcaccatagagcctttaggggaaattttagcctcaagtttctgtagagctacagcatacagcggaatttcagaaagttttgtttttttagacaatggatcagaaagttttctgatgctctgatagtctaattaatgcttttgtgcccaacctgaagacacctacatcgtgaatctcgatgcccatgcaacaagaagccgattctcctcggaaaacttgcccttagaaaagtagggcttgttcatttcgctaacattttcaaccttaccaagttttggcattgccaaattttgataagattgctaaaattttggtaagatttcatatgtacttattaaaatttggcaacaaactaaatgtgcccaaaattttggcaactttaccaaaaaatggtatgtttgaaaatgacatcaaagtgaacaggcccgtaatctttcagttatatcaattctctatgactatttgcctttgaattatgaagtaaccaaacctttgcccttcttttcaggtatgtcgatgctctaaatgctttatgaagatatgcgggaggggatggcttgattattttggctttcttgaatcttgatcaccttgcatgaacaattcaacactgtacaagccgtatgtgttactccctccgtttcacaatgtaagacattctatcatttccc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0199100, RefSeq:Os06g0199100