Os06g0215400

From RiceWiki
Revision as of 09:09, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0215400| Description = TolB, C-terminal domain containing protein| Version = NM_001063673.1 GI:115467077 GeneID:4340483| Length = 6303 bp| ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os06g0215400

Description

TolB, C-terminal domain containing protein

Version

NM_001063673.1 GI:115467077 GeneID:4340483

Length

6303 bp

Definition

Oryza sativa Japonica Group Os06g0215400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:5869108..5875410

Sequence Coding Region

5869362..5869487,5869707..5869811,5870262..5870353,5870451..5870520,5870616..5870738
,5870823..5870908,5871100..5871201,5871559..5871781,5871877..5871942
,5872080..5872170,5872242..5872378,5872865..5872920,5873129..5873211
,5873585..5873732,5873807..5873878,5873966..5874070,5874829..5875010
,5875096..5875268

Expression

GEO Profiles:Os06g0215400

Genome Context

<gbrowseImage1> name=NC_008399:5869108..5875410 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:5869108..5875410 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcactcgcaggcttccgccgcggccgagaaggcggtggtggcgccgtacgggtcatgggagtcgccgatcagcgccgccgccgtctccgccgccgggaggaccgtcgaggggctcgccgtcgccggcgacggccgactcctctgggtcgagacgcgccccgaggagggaggacgagcggtcctagtgaaggaagcggcggagccgggcggcgatgccgtggatgtgacgccggaggggttcgcggtgaggtccctggcgcaggagtacggcggcggggcgttcgcggtgcaaggggatgtggtggtcttctccaactacagcgaccagcgcctttacaagcagaccattggagataactcagcacaacctctgaccccagattacactggatcagtgctccgttacgcggatggtgtctttgatcctcacttctgtcgttatgtaactataatggaagatcaccgaaaggatagctcaaatcccgtgacaacaattgctgctgtaacaataagtgacagagatgctaatgaaccaactgtgctggtcagtggcaacgatttttatgcttttccacgcattgatccaattaaaaggcgtatggcatggattgaatggagtaacccaaacatgtcatgggataaagcgcaattatgggttggatatttctctgagaaaggagaggtacacaacaagatttgcattgctggtggtgacccaacgttagtagaatctcctactgaacccaagtggacttcaaaaggggagctgttcttcataactgaccgagagagtgggttttggaatatttataaatgggatgaggagagcaatttgatagtgcaactgtattcacttgatgctgaattctcaaagccaatgtggatttttggtgtcagctcctatggtttccttggaaaagatgacacgagtaacaaaatcgtttgctgttacaggcagaatggaaggtcatgtgctggagtgctagaccatgattcagggtctttttcagaactggacattcccttctcttctgtaactaacatagtttctggggatgggttcttctatgttgagggtgcatctgctactcttccagtgtcgattgctaaggtgacactggatgaaaagagaaaaacagcaactaatttctctatagtctggtcctcttcagaggatgttatgcaatatgcgtcctactttagtttgcctgaatttatggagtttccaactgtagtccccggccagaaggcttatgcttatttctatgccccgcacaatcatattttccaagggtcgtcagatgagaaacctccgttattggtcagaacccatggtggacctacagatgaagcacgtggagttctggatcttggtgttcagtactggacaagccgaggatgggcatttgttgatgttaactatgggggaagcacaggctatgggagaaaatttcgggagaggcttttagggcagtggggcgtcgttgatgtaaatgattgctgcagttgtgctacatttttggtggaaactggaagagtagatgcgcaacggctttgtgtaacaggagaatctgctggtggattcacaactttagcttgccttgcttttagacagatattcaaggctggttcttctttatatgggattgctgacttagcttcgttgagggcaggcatgcacaagtttgaggcatactacattgacaaccttgttgggaatagaaaggcttactttgagagatcaccgataaacttcgttgatagattttcatgtccaattatattgtttcaaggattggaagacacggttgtgtcaccagttcaggcaacgacgatatataaggccataaaggacaaaggccttcctgttgctttggtcgagtatgaaggggaacaacatggtttccgcaaggccgagaacatcaagtttaccttggagcagcagatggtgttcttcgctagattagtggggcacttcaaggtggctgatggcatcactccaatcaagatcgacaattttgatgaaccctccttgtaa</cdnaseq>

Protein Sequence

<aaseq>MHSQASAAAEKAVVAPYGSWESPISAAAVSAAGRTVEGLAVAGD GRLLWVETRPEEGGRAVLVKEAAEPGGDAVDVTPEGFAVRSLAQEYGGGAFAVQGDVV VFSNYSDQRLYKQTIGDNSAQPLTPDYTGSVLRYADGVFDPHFCRYVTIMEDHRKDSS NPVTTIAAVTISDRDANEPTVLVSGNDFYAFPRIDPIKRRMAWIEWSNPNMSWDKAQL WVGYFSEKGEVHNKICIAGGDPTLVESPTEPKWTSKGELFFITDRESGFWNIYKWDEE SNLIVQLYSLDAEFSKPMWIFGVSSYGFLGKDDTSNKIVCCYRQNGRSCAGVLDHDSG SFSELDIPFSSVTNIVSGDGFFYVEGASATLPVSIAKVTLDEKRKTATNFSIVWSSSE DVMQYASYFSLPEFMEFPTVVPGQKAYAYFYAPHNHIFQGSSDEKPPLLVRTHGGPTD EARGVLDLGVQYWTSRGWAFVDVNYGGSTGYGRKFRERLLGQWGVVDVNDCCSCATFL VETGRVDAQRLCVTGESAGGFTTLACLAFRQIFKAGSSLYGIADLASLRAGMHKFEAY YIDNLVGNRKAYFERSPINFVDRFSCPIILFQGLEDTVVSPVQATTIYKAIKDKGLPV ALVEYEGEQHGFRKAENIKFTLEQQMVFFARLVGHFKVADGITPIKIDNFDEPSL</aaseq>

Gene Sequence

<dnaseqindica>5924..6049#5600..5704#5058..5149#4891..4960#4673..4795#4503..4588#4210..4311#3630..3852#3469..3534#3241..3331#3033..3169#2491..2546#2200..2282#1679..1826#1533..1604#1341..1445#401..582#143..315#ggtggcggtgaggtacagaagactagaagagtagtggagtttacccgcggtcttgacagcaacgccgctcacctcacctctgctctcctccaccccgcaactcccggcagccgccacgcgcgcgcacgcacgccctgtcgcgatgcactcgcaggcttccgccgcggccgagaaggcggtggtggcgccgtacgggtcatgggagtcgccgatcagcgccgccgccgtctccgccgccgggaggaccgtcgaggggctcgccgtcgccggcgacggccgactcctctgggtcgagacgcgccccgaggagggagggtacgcgacgcgcgccgacgccatccacccccttctcgcgtggtcagattgctctcctgatgctgcattttttcttcttcttcagacgagcggtcctagtgaaggaagcggcggagccgggcggcgatgccgtggatgtgacgccggaggggttcgcggtgaggtccctggcgcaggagtacggcggcggggcgttcgcggtgcaaggggatgtggtggtcttctccaactacagcgaccagcgcctttacaagcagaccattggaggtacaccgaacaagccgcgccattgcagcataccgtactctttactgtggataatagttggtgaactcgactactcgagctcgcattgcaccaagtcttaggccttcgaatggaagtcaacggaccaggtctggtgcagttgctgttcttctgctgtttcacaaggactgcaccggttctcagttgtagccttgtaggttggtacattgcccacgcagcctatgatggactacctccgtctcaaaatatatcaacctaatactggctttgtccagatttactatgttatatcctatccaacgctaggttgctatattttgagacagaggggtagtagctttgaggaaaatggatcagaaatggtacgattgagtggaaaacctgagcaggtctaatgtctgcaattcgtgaggcaccgctgaaaatttagttgaaatgtagttaagctttcgtctgccattaatttgggatgcatcatggaaattgggacccagatgaccaaatgcatgggcaaattgtttacataattgagatctccatgctttagagaaaagaaaatgagaagaaactagcctatctttatttttttttctttgaatagtaatgccgctttgattttcaaaaggtttattcgatgtatctttttagtctttaagtcactagtcatcattgctaaaaaaaggcgccatatggagtgctccttcaaagagtatctggtaactaatatatttcaaaaatcttttccttgttgatttcagataactcagcacaacctctgaccccagattacactggatcagtgctccgttacgcggatggtgtctttgatcctcacttctgtcgttatgtaactataatggaaggttattagtattttatttcacatttagcattctagtaggtatgctttccattgttacctttttaaggaagttccaatttaaactcagatcaccgaaaggatagctcaaatcccgtgacaacaattgctgctgtaacaataagtgacagagatgctaatggtaagcttcttttgaactatacctgttacactaactttttattgaaacttctcaacctttttgtttttgctcagaaccaactgtgctggtcagtggcaacgatttttatgcttttccacgcattgatccaattaaaaggcgtatggcatggattgaatggagtaacccaaacatgtcatgggataaagcgcaattatgggttggatatttctctgagaaagggtaatttcttacttgcatgctttctgttctcaactagttttcataaagaaagaggtactactctatctactactggattaccttttttgctttgaaaatactgaatgatattttagatctttatctttgtattcatgtgaaggaacatggagttgtgcatattactaatcttcagcattactgcactagtccatatttgagaacacactgatcttgtagtctctagttcacggcaaatagtcaattcaataagatatattcattattccatcctttttcctaaaataaactatgtttgggttgcttgttgacgtgcgaatgttgaatgatatattccaagcctacatatttattacgtattcataacatgcagagaggtacacaacaagatttgcattgctggtggtgacccaacgttagtagaatctcctactgaacccaagtggacttcaaaaggtgttagcattttcatacccagtttatattattttaagttttttatgtgttcaagacatgctctttcatccttgtagctataccattcttctctgcatggattatgaatctttggcatgtcagaatcattctgtaggttttcatttctccaaaagataggtgcaaatatatttccaaaatatcacttaattcaatcaattttcttcaggggagctgttcttcataactgaccgagagagtgggttttggaatatttataaatgggtatgatcttccctgaactaattatttttattcagttgcccgttgatctgattttgcaaactacttgattgaagtatggtgtggtgcataccggaccttatatccgctgcaaccctctcagcgctaatgtgttctgtctttattacttgtgcctacttcccagtctaatttctcatacaagaagttatattctgtttatatttgatatgcttctttcagtaggaagagttgtgaacttgtgataaaccattttattattgagatattatgttggcgtctccattatatggggcagcgtaatattcatgttgatatcctaccactaactgctaattttttagaatgagggaaacatttatcatcactaaaaacaaaaagaaaagagtccatcctaaccatgatggctaaaattatgttgctaaagatactgaaaatagtgcgatttgtcctcttacttggcatttacgtgctattcatttacaacaggatgaggagagcaatttgatagtgcaactgtattcacttgatgctgaattctcaaagccaatgtggatttttggtgtcagctcctatggtttccttggaaaagatgacacgagtaacaaaatcgtttgctgttacaggttttttcatgttttcccatactcaagtgttggtttactgtgtgtaattcataactttgaatcttatccaggcagaatggaaggtcatgtgctggagtgctagaccatgattcagggtctttttcagaactggacattcccttctcttctgtaactaacatagtatgtgtatgaaatgcgatgagtcaacttcagaactaattgtagtttgctggttataacatttggatctcactcgtcagtgccttaaatttgttggaatgctgatgcttttaactcaaatcctcctgattttctaggtttctggggatgggttcttctatgttgagggtgcatctgctactcttccagtgtcgattgctaaggttcattcgactaccttattggttgtcacatgccaactattcaaactgaattccttcaatatagtgcaaccctttgacctctgtttttgcaccaggtgacactggatgaaaagagaaaaacagcaactaatttctctatagtctggtcctcttcagaggatgttatgcaatatgcgtcctactttagtttgcctgaatttatggagtttccaactgtagtccccggccagaaggcttatgcttatttctatgccccgcacaatcatattttccaagggtcgtcagatgagaaacctccgttattggtcagaacccatggtaattagttatatgatatttcgttgacttcaatagcctattttattctttttgtctttactggtcacacttgtagcagaagttattaggaaacatgatgttggtttttctcattcaattttgttagtgatatagagcagcactttgtttctcttttatttcagttgtttttgtttgaagaatgttttgtagtgatgataaaagatcacagagctctcattggtcctaagtcctgactgacttgactgacaagccttttgaattgctaagggaaagcagaacattaaaataaggaaatgtacttttttttaaagaaaggaaatggaaactcgtattgacattgttgcaattctttaggtggacctacagatgaagcacgtggagttctggatcttggtgttcagtactggacaagccgaggatgggcatttgttgatgttaactatgggggaagcacaggtcttcagctctttcttgactctaatatatctgataaagaacttgcatttgttttatttggatgtttgatgtatgaattattttttctgacgaattacaatgctcttatttacatatactatctgtttagcatcaaagattttggtgtttgatacggactagtttcttgatatttcttcacggtcttaaaggctatgggagaaaatttcgggagaggcttttagggcagtggggcgtcgttgatgtaaatgattgctgcagttgtgctacatttttggtatatcttatcagacacagacctttttcatattttcgtgtggaggttgtaagcatttatgctagtgtcattctgattattaaggtggaaactggaagagtagatgcgcaacggctttgtgtaacaggagaatctgctggtggattcacaactttagcttgccttgcttttagacagatattcaaggctggttcttctttatatggggcaagtctcagatttccataaattctctcttttgctgaaactatctatctgctgagattttgatgcatctggtgttatgcttcggtccaaagcagattgctgacttagcttcgttgagggcaggcatgcacaagtttgaggcatactacattgacaaccttgttggtaaggaattttgcactcatctatgctggaaaataggcgtatgtatatgctcagggtttggttaacaacattacttgccataccttcaatattccagggaatagaaaggcttactttgagagatcaccgataaacttcgttgatagattttcatgtccaattatattgtttcaaggattggaagacacggtaaagctataagatctgaacttctccctcgggtcatttttgtttgaatgcagttatgagttctaattttttactaccagtatattcaaagctatctataattattcagtatgaaacctatttggctgatttgtctttaaagaaacttccaaatcattataatataatcggtctgtactagtacaaagttacaaaaagcaataacatcatataaacaaaaatgaagggtatttaattatcactgatgcactttagtcctcgtgtcccatgatcaatatgtatatggctaggaagtgcacttacagatagagttacctatcgataaatcaaatgtaatctgttaacccagaacagagggaacgaaaatcggctaagagtgacttagcagcgggtgcatttcccacattctgtttctccttaccagcttttcacctctttgatgatcttcaggttgtgtcaccagttcaggcaacgacgatatataaggccataaaggacaaaggccttcctgttgctttggtcgagtatgaaggggaacaacatggtttccgcaaggtctgacgagtacctcttgtctttatctttgcaacaccaaacttatatattagttagtaatgtatcaggttgagtatttcctaccgaattgttttttttttttttaccatgaaggattgaaggctaactgtatatattatttttcagtatatgaaacttttagaccagtaaatagacaattttacataggcacatatctgacttgcatttctggagcaggccgagaacatcaagtttaccttggagcagcagatggtgttcttcgctagattagtggggcacttcaaggtggctgatggcatcactccaatcaagatcgacaattttgatgaaccctccttgtaagcgttaagaagttattcgtcacctaatcaacttctgggaacaactcgagggaactctggagcaacgctgtcctagctgtagtttgaaataatctcttgaagctttgcatacgactctggtcaatataatggaataaatgcttccgttagctagaatttctcccacgttttcacattgtagcacatttgcaggaattttatatgacttttacgaaatttggtataattctagtaggaattggggaaaatttcagc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0215400, RefSeq:Os06g0215400