Os06g0218900

From RiceWiki
Revision as of 09:10, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0218900| Description = LMBR1-like conserved region domain containing protein| Version = NM_001063695.1 GI:115467121 GeneID:4340506| Length ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os06g0218900

Description

LMBR1-like conserved region domain containing protein

Version

NM_001063695.1 GI:115467121 GeneID:4340506

Length

6306 bp

Definition

Oryza sativa Japonica Group Os06g0218900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:6101675..6107980

Sequence Coding Region

6101675..6102109,6102263..6102369,6102753..6102972,6103296..6103383,6103485..6103615
,6104108..6104283,6104649..6104713,6105198..6105278,6105403..6105542
,6105630..6105716,6105798..6106011,6106286..6106444,6107044..6107120
,6107813..6107980

Expression

GEO Profiles:Os06g0218900

Genome Context

<gbrowseImage1> name=NC_008399:6101675..6107980 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:6101675..6107980 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtgggcgttctacctgctgtcgctgccgctgacggtggggatggtggtggcgacgctgcgctacttcgcgggccccgccgtgccgctccacgtcctcgccaccgtcggctacgcctggctctgctccctctccttcatcgtcctcgtccccgccgacatctccacgacaattactggcagtcaggagggtgacgttggattcttttggagctggacgtattggagcacatttttcctatcatggtctattgtacctacactccaggggtatgaagatgctggggacttcacagttaaagaaaggctgaagactagtatccacaagaacttggtctattataaaatcatagggtccattggtctcgttggagtaattctgattataaccatgcgtcatgattgggctggtggtatcatggggtttgctatggcgtgttcaaatacctttggattagtgacgggtgcctttcttcttggttttggtctgagcgaaattccaaagaatatatggaaaactgctgattggacccgtcgccaaaaattcctctatcacagaatcgcaaatatggctggcaaatttgataatgctcaccaagaatattgccacgcaatagctgttgttcaagccacctcgaaacaaatgaccaagcgtgagcctctaaggccttttatggatatcattgatgatatgcttgctcaaatgctgagagatgatccactgttcaagccttctggtggaaaattaggagaagatgatatggactatgatactgatgaaaatacaatggcctcacttcgacgtcaacttaggagagccaatgaggagtattataggtgtaaaagcaaatatacaagttacgttatggaggcccttgaactagaagacaccattaaaaactacgagcaacgtgatgcaaatgaatggaaatatgtatcaggtttaagggaaagtagatcttgcacactgggatccttccttgacttcatagagttcatttggcgttgtatactgaaaaagcaactcctgaaggttcttgctgtaatcctcggttgcatctcagctgccatactattggctgaggccactttactgcccagtgatgttgatttatcgcttttctctgttcttacaaatgttgtaggaaagcaagaagttctagtccaggttgttgcatttattcctttgatgtacatgtgtatttgcacatactattcgctcttcaggatagggatgatggtggtatattcactgacaccgaggcaaactagttcagttagcttgcttatgatttgttcaatggttgcaagatatgcagctcctatttcttacaacttcctgaatctcattcaccttggtggtaattctaaaactacatttgagaagaggatggggaacattgatgatgtcgttcccttctttggaagaagcttcaacagaatatatccactcattatggttgtttatacactattggtcgctggtaatttctttgggtatgtgcttgaattttttggaagctggaaaaggttcagattctggactgaacaagaagaagatcatacagatgggttcgatccatctggagtgcttattctgcagaaagagagatgttggattgaacaaggacataaagtcggtgagctggttgctccattagcaagaaatttcactggtatatacaaagacgttgaatctggaaatgtgcaacaggatgaagaaactgcagggatgaaagcaacaacacttccatccaaaaaggaaggaagactccagtcgaaatatgctagtaacgttgctcttaaatattcttctataagagaacaaaacagcagccatcaagcagttaagcaagcccagacagaaacccaatcgacctctgttgtgcctgaaactggaaactcagagacaccctcttctgtcagtaaagaaccagattcatcagctggaatcgcatcgagatggaccttaatgaagacgggatttcagaacttcaaagcaaacatgagttccaagaagtttcttcctttgagcctgtcatcaacacaatcgtctagttcagggtcgcttgatgagatcttcgagggacttaaacggcattcaagcaatgcaagtgtggattacctcgacgatgatgacggcatttag</cdnaseq>

Protein Sequence

<aaseq>MWAFYLLSLPLTVGMVVATLRYFAGPAVPLHVLATVGYAWLCSL SFIVLVPADISTTITGSQEGDVGFFWSWTYWSTFFLSWSIVPTLQGYEDAGDFTVKER LKTSIHKNLVYYKIIGSIGLVGVILIITMRHDWAGGIMGFAMACSNTFGLVTGAFLLG FGLSEIPKNIWKTADWTRRQKFLYHRIANMAGKFDNAHQEYCHAIAVVQATSKQMTKR EPLRPFMDIIDDMLAQMLRDDPLFKPSGGKLGEDDMDYDTDENTMASLRRQLRRANEE YYRCKSKYTSYVMEALELEDTIKNYEQRDANEWKYVSGLRESRSCTLGSFLDFIEFIW RCILKKQLLKVLAVILGCISAAILLAEATLLPSDVDLSLFSVLTNVVGKQEVLVQVVA FIPLMYMCICTYYSLFRIGMMVVYSLTPRQTSSVSLLMICSMVARYAAPISYNFLNLI HLGGNSKTTFEKRMGNIDDVVPFFGRSFNRIYPLIMVVYTLLVAGNFFGYVLEFFGSW KRFRFWTEQEEDHTDGFDPSGVLILQKERCWIEQGHKVGELVAPLARNFTGIYKDVES GNVQQDEETAGMKATTLPSKKEGRLQSKYASNVALKYSSIREQNSSHQAVKQAQTETQ STSVVPETGNSETPSSVSKEPDSSAGIASRWTLMKTGFQNFKANMSSKKFLPLSLSST QSSSSGSLDEIFEGLKRHSSNASVDYLDDDDGI</aaseq>

Gene Sequence

<dnaseqindica>5872..6306#5612..5718#5009..5228#4598..4685#4366..4496#3698..3873#3268..3332#2703..2783#2439..2578#2265..2351#1970..2183#1537..1695#861..937#1..168#atgtgggcgttctacctgctgtcgctgccgctgacggtggggatggtggtggcgacgctgcgctacttcgcgggccccgccgtgccgctccacgtcctcgccaccgtcggctacgcctggctctgctccctctccttcatcgtcctcgtccccgccgacatctccacggtacggtcccgccgcgccattccccattccccaaccgattactgtctcgagcttagcttttgctgcggtgctgcctcctgtcctgctgcctcgctgtggaattggtaaccgtttgggagtttgttcgggaattttgttcgtgtgcatattggggtttaaccgggagttcgggaggtaacatggagtctgagactaattgaaccgtattttcataatagagattgagtattttgaatattttgaattcgattggccgtatctgtgaatcctttgctcgtgggtgagattactgtgtgtgttgcaagacgtgagaagggggaattggtagaatggttgtttatcggtgtgtccgtaatgtcgatgccaagtcaatcacgagtgaaataaaggatcaaaggaataaataactgtactggatacttttcatgatgtaaatacccccatggcttgccttttgggtagaagagtttttgctcgttcctgttttcctgaatgttaagaagttatgcaaatcatcgtgttttgaagaaaaatgaagtaagatttggtctttgcagtgacagatgtttggtagaactgtaaatgtgaaggcagacaagtcgtgctggtgttacattacatttgtaccccatgcatggtcagtcgttcttattcttctgttatgacctggtatcccgttatatgagatgcagacaattactggcagtcaggagggtgacgttggattcttttggagctggacgtattggagcacatttttcctatcatggtatgtcttcaatcatgattatttgtgtttcattcccaacaccatagctacactttttgtgaactttcaatggcagtatctagtacagttctgttcttgttctctgcctggtcaagtattggcgtattggtgagctgaaaactcgtaaaatgtaatgtccttttcacaacatggatgtagtctgaactctgcaactgctgccttgattttcattgagcatttggtccatgctgcagatgcttatcttcttgatcgcacacagcttatcagattaaatgattcaattacttgaccgaacattttttcaaatattaaataatttgatccttattttaacatggccacatattttattgtgactttctaaaattgtatgatgttgacaacatgagaagttccttttctttttggttgatgtcgctgttttattcgtaagatatcataagttatgtaattcctgtcaaaagtacgtatggttgactggtctagttgcagtttcttttactactgggagtctcattgcgacgctcttaagttgtctgtgtagcccacaattttacataattgccattttagattttgttcatgtctctgagcaggtctattgtacctacactccaggggtatgaagatgctggggacttcacagttaaagaaaggctgaagactagtatccacaagaacttggtctattataaaatcatagggtccattggtctcgttggagtaattctgattataaccatgcgtcatgattggtatgtttcaaatgtctactgaggttgcatattacatgatccatctaaaagtgaattgagttcatgctcaaatacagttcttgttttaatctgcttaggtgcactccactggaagaaatacccacttcacgataacttaaccatttcaaatgtttcctttaatccttctccatattttttactatgttctgtacctttaggaatcgtatagaatgggatcataaagtcatttcaatttttgctttattcatataaatgacataatgctatgcagggctggtggtatcatggggtttgctatggcgtgttcaaatacctttggattagtgacgggtgcctttcttcttggttttggtctgagcgaaattccaaagaatatatggaaaactgctgattggacccgtcgccaaaaattcctctatcacagaatcgcaaatatggctggcaaatttgataatgctcaccaagaatattgccacgcaatagctgtatgtacttttccgcattgtcaaaatatcatttcaggatcatatcattgtgctaaaggcttgttcctttccttattaaaggttgttcaagccacctcgaaacaaatgaccaagcgtgagcctctaaggccttttatggatatcattgatgatatgcttgctcaaatggtatggatgctcaggtacaacttgaagctgacattcaaatactgtggttatatatgacaactgacaatcttacatctatccgatcagctgagagatgatccactgttcaagccttctggtggaaaattaggagaagatgatatggactatgatactgatgaaaatacaatggcctcacttcgacgtcaacttaggagagccaatgaggagtattataggtgtaaaaggtattatagtctaaactattacaagttgatagtactggacatgttgaactgtggtttgaaacaaaaatggctgttcatttaactgtttctatttactgtttaactgtgtgttgtgcttttacagcaaatatacaagttacgttatggaggcccttgaactagaagacaccattaaaaactacgagcaacgtgatgcaaatgaatggtgagcaattgactttgatgttttacaaggaatttgttgtctcagttcatgaatttatttttgtatgcaaaatggtaacttcatgataacaaagttgttctccattttataatgacaattaatgtgttgatacaaatttcatgagtgaccttagatacatttggatggatgaaagcagttaacagcataaatgtggatacaatttttacattctcaaaatacctgctatatacccatttatcaatgggctctacttccttgaataatcctaacaagaatatttgactagattctttttgaggggatattagattacatatgtacttcttggcatttcaggttactctgcttgtctacagcaatattacatatatgaaaattttacccaaccagttttatcagcatgttacaaactggttaagttatgaagaattctgaagagaccattttcaaccagtgttgaatttatgtttgttttttacaggaaatatgtatcaggtttaagggaaagtagatcttgcacactgggatccttccttgacttcataggtattttcctccaatctagactggaaatgtctgctcatatctctattgtaccaaatgaaaaggtctcaccagaggctactatgtgattgaccatgctcttaaacctacatctgtccatcatgtgctgatgcatatagatccatatttgctttggatatcattagcttaaagtgggaaaatacacatgtggattattgtgggcccccatggcaatggatcttatcaaattttggtactaaagagtaaagttgcattttgatgtacatccctttagttagttgtattgacacataaatagttttgagttactctttggccagtcgttaattcacgaaactgactcacggacatgttcgcattttcagagttcatttggcgttgtatactgaaaaagcaactcctgaaggttcttgctgtaatcctcggttgcatctcagctgccatactattggctgaggccactttactgcccagtgatgttgatttatcgcttttctctgttcttacaaatgttgtaggaaagcaagaagttctagtccaggtaagtagttgggtagtttaagttcattgctttgatttgttgtctttgaagaaaataaaaaaaaatgtgccctccaccttgaagccaaatgcctatgcgattgaattgttttttatatgaccactaatttcttattacttcgtattattttgtatgtaccaatgcaattgaatagtccattctgtagtagtggtgcaaggtgttaactagaaggaagatattgcacagtgacttcagttccatatgtgaatattcttttgtataaacataacctctttgcgtggaatatttaatgctgtggatctcccttctacttgcccatttacatgactaattctactttaatatgtggacaaactttcctggaggcttgttgaaacttgaaaacaatctattaagctttctttaaaacagaactgtttttaaagatcagatgctatcttcagcttacttcctttccaacttttcctaattagaattaccacttaacaggttgttgcatttattcctttgatgtacatgtgtatttgcacatactattcgctcttcaggatagggatgatggtggtatattcactgacaccgaggcaaactagttcagttagcttgcttatgatttgttcgtaagttttccaagtccccaccatttggcattataagtacatcaatcataaaagtaattttgcaccttgagtaacctttacatcgaatgtcctttttgcagaatggttgcaagatatgcagctcctatttcttacaacttcctgaatctcattcaccttggtggtaattctaaaactacatttgagaaggtaataatctatatgcctttccgtattattttaacttcgtttttatgtaatatccaaatatgtagattcaattcatcctccttttgaaccattgttttctcaatttggaggaataaacaaaagaaatcatggatactgtacacgaactctcgagaatatatgcagaatgaattgagtttttactcattcttctatcaaggtgctgagtgctaatcatatttgaaatggaaatgttctgccctttggtttttaagattactgttttatggataaataattcacatctaactgatggataatttgtctgctcttcttttatacagaggatggggaacattgatgatgtcgttcccttctttggaagaagcttcaacagaatatatccactcattatggttgtttatacactattggtcgctggtaatttctttgggtatgtgcttgaattttttggaagctggaaaaggttcagattctggactgaacaagaagaagatcatacagatgggttcgatccatctggagtgcttattctgcagaaaggtaacatgatgtaacaccgacatatttttctttctactccatacactatcttcctgcttgctctgatgggattttcaattttgttttcttctatgagtaaccagaggatccactaaactgataacaacataaatgtgatcctgtttctaacttatcaggtgtttccaaatttacttaacatttatacattctcgtgaataatcagtactcaactgctggtgtatcacctagtcaaaatactaaagttccctgcatcggcataaggactacaagtcttcagaaaaatcaatgcttaaattatgtgttttcttagtcttgttttttttaaaaaaaaaaatgttattagcttgtagtgacatatttcagtttttttttccctgcagagagatgttggattgaacaaggacataaagtcggtgagctggttgctccattagcaagaaatttcactggtatatacaaagacgttgaatctggaaatgtgcaacaggtgtgaatggatttgcctgcgtgataaggcctttctgttatagttttgtttctcttgttgttcatgtttctctagcgtctgcagtctgctatgactgtatttcagtaaagaaatggtctcactctatttcgttgttccatatgttctccacaggatgaagaaactgcagggatgaaagcaacaacacttccatccaaaaaggaaggaagactccagtcgaaatatgctagtaacgttgctcttaaatattcttctataagagaacaaaacagcagccatcaagcagttaagcaagcccagacagaaacccaatcgacctctgttgtgcctgaaactggaaactcagagacaccctcttctgtcagtaaagaaccagattcatcagctggaatcgcatcgagatggaccttaatgaagacgggatttcagaacttcaaagcaaacatgagttccaagaagtttcttcctttgagcctgtcatcaacacaatcgtctagttcagggtcgcttgatgagatcttcgagggacttaaacggcattcaagcaatgcaagtgtggattacctcgacgatgatgacggcatttag</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0218900, RefSeq:Os06g0218900