Os06g0219400

From RiceWiki
Revision as of 09:10, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0219400| Description = Protein of unknown function DUF246, plant family protein| Version = NM_001063696.2 GI:297605407 GeneID:4340507| Leng...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os06g0219400

Description

Protein of unknown function DUF246, plant family protein

Version

NM_001063696.2 GI:297605407 GeneID:4340507

Length

3595 bp

Definition

Oryza sativa Japonica Group Os06g0219400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:6145918..6149512

Sequence Coding Region

6145918..6146118,6146410..6146509,6146605..6146672,6147849..6148046,6148156..6148284
,6148371..6148504,6148608..6148821,6148904..6149088,6149178..6149273
,6149359..6149512

Expression

GEO Profiles:Os06g0219400

Genome Context

<gbrowseImage1> name=NC_008399:6145918..6149512 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:6145918..6149512 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccactgcggcgaaaggtgaggggtgccgccgcggcggggaggcgggcggcggtgcggtggtggctgctctcgctcgccgcgacgggcgccaccgtcaccgccgccgccgcgctgctcgccgtcgccctccacgtctcctcctcctccgccgcctccggccccgcttcctcctccggcgtgccctaccgcctctccaagctggacggcgcagccgatgacgccggggagaagaggtggtggctgccggcaccgtcgcgcgggttcacgccatgcgtcgcgccgtcgccggcgtacaaaagtcctgggccatcgagggggtacctgctggtgctcacgaatggagggctcaaccagatgcgcgctgggccacttttcaacatcagcaacttctcagatgtatttgatgaggaatattttattcattctttggcaaatgatgtgaaagttgagaaaaaattaccaaaggatttggtgaaagctccaaagtttgttaggtacttcaagagctggtctggaatagattattaccatgatgagatttatcctctgtgggagcaccggcaggttattcgtgctgctaaatctgattctcgccttgcaaacaactaccttcctcctgatattcagaagcttcgctgccgagcctttttccaggcactgagatttgctcctccaatcgaagctttaggcaatctgttggtggagaggatgagatcgtttggaccatacattgctttgcatttacgttatgagaaggatatgcttgcttttagtgggtgcacacatggtctgtcacagaccgaatcagaggaacttgcaatgatcagagaaaacacaagctactggaaggtaaaagatattgatccattggatcaaagatcccatggttattgtcccttgacaccaaaggaggttggtatgtttctttctgctcttggatatccatcgagcactccggtttacatagcggcaggggaaatatatggcggtgaatctcatgtggttgatttgctatcacgctttccaattatgatgaacaaggagaagcttgcctcagctgaagaactacgaccattcaggcaatatgcttctcaaatggcagctttagactacattgtttcagtggagagtgatgtctttattccatcatattcggggaacatggcacgggctgtcgggggtcatcgtcgttttcttggccacaggaagaccatcattcctgacaggaaagcattagttcgcttgtttgataaagttgatggtggattactgaacgaaggggagagactatcacgaaggataatagatatccatcggaaaagacaaggatctccgaggaaaaggaaaggtcctgtatcaggaacaaaaggcaacgataggtttcggtcagaagaggcattttatgagaaccctcttcctgactgcctgtgtcaaccggagtccccagccagcgatgcttctgtggtcagcatctag</cdnaseq>

Protein Sequence

<aaseq>MPLRRKVRGAAAAGRRAAVRWWLLSLAATGATVTAAAALLAVAL HVSSSSAASGPASSSGVPYRLSKLDGAADDAGEKRWWLPAPSRGFTPCVAPSPAYKSP GPSRGYLLVLTNGGLNQMRAGPLFNISNFSDVFDEEYFIHSLANDVKVEKKLPKDLVK APKFVRYFKSWSGIDYYHDEIYPLWEHRQVIRAAKSDSRLANNYLPPDIQKLRCRAFF QALRFAPPIEALGNLLVERMRSFGPYIALHLRYEKDMLAFSGCTHGLSQTESEELAMI RENTSYWKVKDIDPLDQRSHGYCPLTPKEVGMFLSALGYPSSTPVYIAAGEIYGGESH VVDLLSRFPIMMNKEKLASAEELRPFRQYASQMAALDYIVSVESDVFIPSYSGNMARA VGGHRRFLGHRKTIIPDRKALVRLFDKVDGGLLNEGERLSRRIIDIHRKRQGSPRKRK GPVSGTKGNDRFRSEEAFYENPLPDCLCQPESPASDASVVSI</aaseq>

Gene Sequence

<dnaseqindica>1..201#493..592#688..755#1932..2129#2239..2367#2454..2587#2691..2904#2987..3171#3261..3356#3442..3595#atgccactgcggcgaaaggtgaggggtgccgccgcggcggggaggcgggcggcggtgcggtggtggctgctctcgctcgccgcgacgggcgccaccgtcaccgccgccgccgcgctgctcgccgtcgccctccacgtctcctcctcctccgccgcctccggccccgcttcctcctccggcgtgccctaccgcctctccaaggtaatgtgcgccacggccgcttagattgaaactctcgggggtgtgctactaactggacgggttgcctccttctcctcgtcgtcgtcgtcgccgacgccgcagcagccgcgggaggccggggagctgaggtgggagcaggagttcgcgccgccgcaactcgcttcgccgcagtcgcgaaaggtgacttggctggtctctccgcctccgccgccgccaaatctgttaaacgcagttgctctctttggaattcatgggagtccgtgacgtgggattaatctctagatttgacagctggacggcgcagccgatgacgccggggagaagaggtggtggctgccggcaccgtcgcgcgggttcacgccatgcgtcgcgccgtcgccggcgtacaaaagtactactatccccatggccactccactcaaccgtcctatctcaacgtttgtctcgaattcgtgccgcattctgagttcgatcttactgttgcaggtcctgggccatcgagggggtacctgctggtgctcacgaatggagggctcaaccagatgcgcgctggggtaagatggatcggtgattcgttcgtcctgatcaaaatttctccggttgtggcgatgcgctgggggttttggcatacggggggatacgaattattgtttggtttgcaatagatatgttgacttgcttggtggaacctagcgtgcgtgcatgtggggtgttctatcagagttgacggttttaatcatccataatcgattttgttggcggcatgtttgttctttaatcaatgagtcgtggttgttcgggtgctaacgtgtctgtactcttcttatgtgggttttgtttttgtgctttaatcatctgctgtggggcctctaatgactacatatcagacataaaagcttacataagctactctacaataaggtttacataatatggaaatgttgattatgaaactaatattgtgcaaatggttattgcttaattcagtaatcggtaacatagagtgcatacctgaattgtattcaggatataatcctgaatatggttggtgggtgggtgttgtctcagtactattcaaaatttcttgccctagtgtttcataggtgtcactgtagctatttctcgtgatcaatgtcaattattggtatgtgttattaccatgtttgtgccatcacttaaaatttgtttcatttatggcatgctaaaatgttcttgttttgttatgagaccaagaatagctaaattctatttgggtatgcaagactgagatagctgatattaatgcctgaaagttttgttgagttcaaatacttcagttagttaacaggaatttctgtttttgtttaggtgaccgtaaaagcaccttctaccagttgagggatttttccttttcttaggaatataatatctagagtgttatgtgacttaaatgtccattgtttgagacggacgatttgtgttaaacttactacatacaactcctgctctaaaatcaatcatcagtgaaccatgtgcatattcagttagatgcaaaatcccccatgactttttctttcactcactaattctattcttatggcagatcagcgatatggtagcagttgcacgtatgctcaaagctactctcataattccagagcttgataagaaatcattttggcatgacaaaaggtaagtggagtgtagtttttggctttcaccttccctctgaccgatctgaaataacacagccacttttcaacatcagcaacttctcagatgtatttgatgaggaatattttattcattctttggcaaatgatgtgaaagttgagaaaaaattaccaaaggatttggtgaaagctccaaagtttgttaggtacttcaagagctggtctggaatagattattaccatgatgagatttatcctctgtgggagcaccggcaggtttgtattcattcaattgctatatttcatttgcctcctaataatttgaaagcagtagattctagatgcaataattttgagctgttatcctgatgaaagatttgtataggttattcgtgctgctaaatctgattctcgccttgcaaacaactaccttcctcctgatattcagaagcttcgctgccgagcctttttccaggcactgagatttgctcctccaatcgaagctttaggcaatgtatatcttttactactgtgtttgccatgatgattccataacaaatgtaagactagttccaacagatgtgttaactgattctgcagctgttggtggagaggatgagatcgtttggaccatacattgctttgcatttacgttatgagaaggatatgcttgcttttagtgggtgcacacatggtctgtcacagaccgaatcagaggaacttgcaatgatcaggtaatgccttcaaatttgtttattgcttattgcatgatcataccttgttactagcagctaaataacattagctgtgtgattgatttttctcgtattcctacagagaaaacacaagctactggaaggtaaaagatattgatccattggatcaaagatcccatggttattgtcccttgacaccaaaggaggttggtatgtttctttctgctcttggatatccatcgagcactccggtttacatagcggcaggggaaatatatggcggtgaatctcatgtggttgatttgctatcacgctttccaattatgatgaacaaggtatgggcagtgtcaattctgttaatctaactcttgctacactactttcattagttgacttatgttacttctccatctgcaggagaagcttgcctcagctgaagaactacgaccattcaggcaatatgcttctcaaatggcagctttagactacattgtttcagtggagagtgatgtctttattccatcatattcggggaacatggcacgggctgtcgggggtcatcgtcgttttcttggccacaggaagaccatcattcctgacaggtgaaaaatcatgaaacaagtactctcagcattatagaattgccaaattctttgcttctgcgtctcattatattctttcttcaattaaggaaagcattagttcgcttgtttgataaagttgatggtggattactgaacgaaggggagagactatcacgaaggataatagatatccatcggaaaaggtatcaaacgataaaacatgagaaatagaatactaaagttcccatctgtttttctttttctcatcgctctttacttgttctttagacaaggatctccgaggaaaaggaaaggtcctgtatcaggaacaaaaggcaacgataggtttcggtcagaagaggcattttatgagaaccctcttcctgactgcctgtgtcaaccggagtccccagccagcgatgcttctgtggtcagcatctag</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0219400, RefSeq:Os06g0219400