Os06g0222100

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Revision as of 09:10, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0222100| Description = HAD-superfamily hydrolase subfamily IIB protein| Version = NM_001063713.2 GI:297605409 GeneID:4340524| Length = 4090...")
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Gene Name

Os06g0222100

Description

HAD-superfamily hydrolase subfamily IIB protein

Version

NM_001063713.2 GI:297605409 GeneID:4340524

Length

4090 bp

Definition

Oryza sativa Japonica Group Os06g0222100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:6276594..6280683

Sequence Coding Region

6276594..6276748,6278132..6278423,6278762..6278854,6278968..6279041,6279160..6279229
,6279324..6279401,6279513..6279614,6279767..6279829,6279986..6280135
,6280221..6280364,6280450..6280683

Expression

GEO Profiles:Os06g0222100

Genome Context

<gbrowseImage1> name=NC_008399:6276594..6280683 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:6276594..6280683 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccggggtcatccggccgcgcgccgctcttcgcgtgccgtggcgccgcggccgtgtcggcgtcctccatgctcggcggcggcggcgcggcgtaccaggccgcggtggtggcgcacgtggcgccggtgccagctatcaggccgtgcgccagctgggtcgtcgaggccatgcgcgcgtcgtcgccgacacggcccgccgccgccgcggtcgacgccgagtacgacgcgtggacgcagaggaagcacccgtcggcgctgggcagcttcgagcaggtggccgcggcggcgagcgggaagcgcgtcgtcgtgttcctcgactacgacggcaccctctcccccatcgtcgccgaccccgacatggccttcatgtccgacgagatgagggcggccgtgcgcgacgtggcggagcacttcccggcggcgatcgtgaccgggcgctgcgtcgacaaggtgcagagcttcgtcggcctcccggagctctactacgccggcagccatggcatggacatcaagggccccagctccaacgaggaagaagacaccaagatcctcttgcagccagctcgcgagttcctcccggtgatcaacaaggcttacaaggctttgatggagaagacgaagagcacgcctggggccagagtggagaacaacaagttctgcctctccgtgcacttcagatgcgtcgatgagaagagatggaatccgttggcagagcaagtgaaggccgtgctccgggactaccccgagctcaaactcacccaaggaagaaaggtcctggagatccggccgtcgatcatgtgggacaagggcaaggcggtggagttcttgctgaaatctctcggattcgacgacgaccgccgcgacgtcctgccggtgtacatcggagacgaccggaccgacgaagatgctttcaaggtgttgagaaagagaggtcaagggttgggaattcttgtctccaagtgtgccaaggagactgacgcctcgtactctctccaggacccagcagagaagtacaccaacgccggggcgcacgtgttcgtgacgatgctcctgaccgtggtgttcacggcagctgtggcgttggctcttgtcaacgccgtcaactcgcatgacttcgcagcacacctcgccggcgtggactgccgcatggggctagctggtccagtacgatgcccagcctcgggcttcgtggagctcctcgtgctggcgctacatgtggttagatgcgtgctcgccatcttagatcgcctgcatgcctgcctaatgtcgccctcgctacagctttcgattgcatctccatgtcatggagttccttgttcgattggtgcagtggaagcttcggcgatcatcgtcagcgatgcgcccgagggtttaattagtacactgacgacggatcatatatactatatgacagtcttccctgctaagctagctctgacttctgaagaagtttga</cdnaseq>

Protein Sequence

<aaseq>MPGSSGRAPLFACRGAAAVSASSMLGGGGAAYQAAVVAHVAPVP AIRPCASWVVEAMRASSPTRPAAAAVDAEYDAWTQRKHPSALGSFEQVAAAASGKRVV VFLDYDGTLSPIVADPDMAFMSDEMRAAVRDVAEHFPAAIVTGRCVDKVQSFVGLPEL YYAGSHGMDIKGPSSNEEEDTKILLQPAREFLPVINKAYKALMEKTKSTPGARVENNK FCLSVHFRCVDEKRWNPLAEQVKAVLRDYPELKLTQGRKVLEIRPSIMWDKGKAVEFL LKSLGFDDDRRDVLPVYIGDDRTDEDAFKVLRKRGQGLGILVSKCAKETDASYSLQDP AEKYTNAGAHVFVTMLLTVVFTAAVALALVNAVNSHDFAAHLAGVDCRMGLAGPVRCP ASGFVELLVLALHVVRCVLAILDRLHACLMSPSLQLSIASPCHGVPCSIGAVEASAII VSDAPEGLISTLTTDHIYYMTVFPAKLALTSEEV</aaseq>

Gene Sequence

<dnaseqindica>3936..4090#2261..2552#1830..1922#1643..1716#1455..1524#1283..1360#1070..1171#855..917#549..698#320..463#1..234#atgccggggtcatccggccgcgcgccgctcttcgcgtgccgtggcgccgcggccgtgtcggcgtcctccatgctcggcggcggcggcgcggcgtaccaggccgcggtggtggcgcacgtggcgccggtgccagctatcaggccgtgcgccagctgggtcgtcgaggccatgcgcgcgtcgtcgccgacacggcccgccgccgccgcggtcgacgccgagtacgacgcgtggacggtgagtcgtcgctcgcgctcctctggttgtgtgtgcctagctagcgttgtgatcgagctcgagccgcgtcgtcgtttgtacgcagcagaggaagcacccgtcggcgctgggcagcttcgagcaggtggccgcggcggcgagcgggaagcgcgtcgtcgtgttcctcgactacgacggcaccctctcccccatcgtcgccgaccccgacatggccttcatgtccgacgaggtcaatactaacaatccactgcaccacgatcaccaaccgatcgaacaccatgcgcgacggacgctgacatctcctttctcttcagatgagggcggccgtgcgcgacgtggcggagcacttcccggcggcgatcgtgaccgggcgctgcgtcgacaaggtgcagagcttcgtcggcctcccggagctctactacgccggcagccatggcatggacatcaagggccccagctccaacgtacgtcagcagctgtcgcactcttatcgcttcatccacacaacaacttacccaaatcgccatcaccaccacattcgcaatcattgcttcttctgcttgcttcacactccattgttattcttgtacttactagctgctactcctcccattctccaggaggaagaagacaccaagatcctcttgcagccagctcgcgagttcctcccggtgatcaacaaggtgattaactaactaatcaactaattagacatgctaatcaactaactaatcaacatgtcttagctgtaataattcttagttagttgagccatgaggaacttaccagctacgaattttttttcacttatttttgtaacaaaaaaaaatgacaggcttacaaggctttgatggagaagacgaagagcacgcctggggccagagtggagaacaacaagttctgcctctccgtgcacttcagatgcgtcgatgagaaggtaattagtaattgattaattaatcaatccagttcttgcattacaatataattaatcgatcttggttagtttcgagatcaaactataattaatcagccagtgttcttgcagagatggaatccgttggcagagcaagtgaaggccgtgctccgggactaccccgagctcaaactcacccaaggaagaaaggtgattaattgatgcatatcaaccaaattaatcaacggcgagctcgatactctgacgacgacgatggctaacgacgatgaacttgatcacgcaggtcctggagatccggccgtcgatcatgtgggacaagggcaaggcggtggagttcttgctgaaatctctcggtaagatcaatcaatttctttctccgtcgtcttcctcctctcgccgccagtgaaaaaacatcttctccttctgatcgctcacgggttgtccgcttgctgttcgttccatctctcgtaggattcgacgacgaccgccgcgacgtcctgccggtgtacatcggagacgaccggaccgacgaagatgctttcaaggtgaaaaatatatacatgtttaatttcacgtacatgcagctggtgatttcgactgtttttgttcgtttcaaaagtataaatttgggtttttttttgggttaattaattattaggtgttgagaaagagaggtcaagggttgggaattcttgtctccaagtgtgccaaggagactgacgcctcgtactctctccaggacccagcagaggtacacatggtctttgatatataactatatgagttctactccggtgctttctacttatagtagaaaataatctgaaccactaatctcatttgatcaaagggtttagatcaatttctactaccaccttatttaatggtagtagaatcgtggatggctattattgtccaagaacaaatattagtggaggggtataatcatcatttacaatcactggccctagccgtactcaactcaatctttcctcacgtcggccaaagagaatcgcataactcccccaaattgcatccggagacgacgccgagtatctcctccctgccgccgcctccgccactcgatagaagtacaccaacgccggggcgcacgtgttcgtgacgatgctcctgaccgtggtgttcacggcagctgtggcgttggctcttgtcaacgccgtcaactcgcatgacttcgcagcacacctcgccggcgtggactgccgcatggggctagctggtccagtacgatgcccagcctcgggcttcgtggagctcctcgtgctggcgctacatgtggttagatgcgtgctcgccatcttagatcgcctgcatgcctgcctaatgtcgccctcgctacagctttcgattgcatctccatgtacgtgcgccggtggcagcgcggcgaagtgaccaatgtacatgaagtatacgtgctaagtaggatcgaatttgttccttatatggtgaacactaacagaaaacctttctccttgttcgttcagcaaagttgcagataaaaatgtcaaacagaattattttcttattgcttcaagtcacattaaggcttgttttagttcctaactttttcttcatacttccaactttttcatcacatcaaaactttcccccacacacaaacttccaacttttccgtcacatcgtttcaattttaatcaaacttccaattttagcgtgaactaaacacaccctaagcatactattgctactgctactgctactgctcaagttcagacttcagacttcaaaaaggccccaccaattcatgagctcatagaggctctgtttagttcacaccaaaattagaagtttggttgaaattggaactatgtgacggaaaagttgaaagtttgtgtgtatagaaaagttttaatgtaatagaaaagttggaagtttcaagtaaaagttaggaactaaacacggcgaaaatctgatttggaccagcatgttgatttaacaaccagaaaaaaaaattggacatgggcacacctgttgcctcgaacaatatttttgcagcattagaactagtacatataagttatttttgcagcattagaactagtatatataagttatacagtccaggatgcacttaatgaatacagatagaaaaggattacaggcaagactctgactagaagctgcaaaaacatctaaacaggcaagcaccggtgaacaaagaagtactggcgagacggccgtcggcgccgccgccgccggaatgtatcggatggtgcccttgcacgcggcaaaatggggagacaaatggagaatgagtggggaaagaatggccgccggagtagactgccggcggcgcgaggatttgccgagcagtggagatggctaccgtcaggaggagatcgacggtggtgggaggatttgccgcagcgaatggaagcgtcgtccagtcgccgagtgcctagcgagatgaatagataaaatcccaaataccaccattacccctaatcactaagtagtaatgtactaatatgcccttgtgaaccgacgattcagatcaattctacttgtagtataatactacaagtagaaagcaccggagcgtcgctctaactatatatatatgtaaacatccagcatgacatgttcaaattagtttttttttacattagttaagtaaacaataacattcatgttcaaatcagtcatggcgtcattttggcgatggcgatgtgcgcgagaaaatgctaacaaattgagctgtaaatttctctaaaatttccaggtcatggagttccttgttcgattggtgcagtggaagcttcggcgatcatcgtcagcgatgcgcccgagggtttaattagtacactgacgacggatcatatatactatatgacagtcttccctgctaagctagctctgacttctgaagaagtttga</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0222100, RefSeq:Os06g0222100