Os06g0229300

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Revision as of 09:11, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0229300| Description = Similar to Hox2b protein| Version = NM_001063749.1 GI:115467229 GeneID:4340565| Length = 9038 bp| Definition = Oryz...")
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Gene Name

Os06g0229300

Description

Similar to Hox2b protein

Version

NM_001063749.1 GI:115467229 GeneID:4340565

Length

9038 bp

Definition

Oryza sativa Japonica Group Os06g0229300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:6724347..6733384

Sequence Coding Region

6726928..6727493,6727606..6727771,6727850..6727973,6728058..6728170,6728269..6728877
,6731279..6731569,6732283..6732372,6732465..6732884

Expression

GEO Profiles:Os06g0229300

Genome Context

<gbrowseImage1> name=NC_008399:6724347..6733384 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:6724347..6733384 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggataagacaactacttctgatcttgttttggacaacgacaacattgggagtaatgctggttctgcacaggagcctcttactaccaatggtaagactagtggggtcagaaatagatacaaacaaactgttaaaaggggaaggaaaggctcccaaatatcaccaagtaaaacatatcccctgagatcttcacatagtaatgtcagggtgcttcgctctgcctcaaaaaagaagaatgagacacctattgtgcccacaaatgataatactgctgttcaacgagttgcgaagaaaaggaaaagaagcaaacccttgagacctgcacctagcagggtgcttcgctctacctcggaaaagaagaataaggcacataatgagcttctaaatgatggtgctggtgttcaaccagccgaaaagaaaagaaaggtaggcagacccccaaaaggaggaactcccaaggacgattacctcatgatccgaaagcgagttagatatgttttgaatcgaatgaactatgaacaaagtttaattcaagcctatgccagtgaaggttggaaaggtcaaagcttggaaaaaataagacctgagaaggagcttgaacgagccaaggtggaaattctgcgatgcaagtcaagaatacgggaagcttttcggaatttggattccctcctatctgagggaaagctggatgaatctatgtttgattctgctggagaaatatctagtgaagatattttctgtgctgcatgtggttcaaaggatgttacattaaaaaatgacataattctttgtgatggaatctgcgacagagggttccaccagtattgtttaaaccctcctttgcttgctgaagatattccacagggggatgaaggatggctttgccctgcatgtgattgcaaaattgactgcatagatgtattaaatgaactccaaggggtcaaactctctatccatgactcttgggagaaagtttttcctgaggcagcatcctttttgaatggttctaagcaaattgatgcgtccgatcttccatcagatgattcagcagacaatgattatgaccctactttggctcaagggcacaaggtggatgaagaaaaatcttctggagaagatggtggtgaaggattagattctgatgactcatcttctgaggattctgaatcttctgagaaggaaaagtctaaaacttcacagaatggaaggacagttgatgatcttggtttgccttctgaggattcagaggatggtgactttgatccagcaggtccagattccgacaaagaacaaaatgatgaatcaaactcagatcagtcagatgaatcagattttacatctgactctgatgatttttgtgctgagattgctaaatcctgtggtcaggatgaaatctcaggcccttcatcatcacaaatcagaacagtcgatcgcaccgatggaagtggttttgatggtgagcctaatgcagaaaattcgaatcttgcatttatggagacagagctagagcaagacatggtgctaccaatttctagtaaacgacaagttgaacgtttggattacaaaaaactgtataatgaggcttatggtaaagcatcatctgattcaagtgacgatgaagagtggtatggaaatagtacacccgaaaaaggtaatttagaagacagtgaaacagattcgcttgctgaatcacctcagggtggaaaaggattctctagaagagcaccagttaggtaccataataatgaacatactccacagaatgtaaggcccggtggttcagtaagcgaccagcaaactgaagtactttgctccaatagcaatggtagcacagccaaaaacagacattttggtcctgcaattaatcagaaactgaaggcacatttcaaggaagatccataccctagtcgtgcaacaaaagaaaatctggcacaagagttaggcctcacatttaatcaggtcactaaatggttttccagtactcgtcattacgcaagagtggcagccacaaaaaaggagaacaacattgaaaatcatacggctgagaataataacaataccaacactgttgatagcatacaactgagaggatccaatgatattgttagtgtagatagaaatgatatggtctccgaggaaaggacaggacaaagtaatctcaatgaaggtactccattaagatcagataccagctgtgggcagagtgtggctgtgactcctatggtacacccagaaaaccagggcaatgattcctcaagtaatgttagaacaccaaatgctaagtctgcggagaaattgatccctggactggaaaattcagatgaggctaggcgaaaggcggtacaacgggaactgagaaagatgaagactggcaggtga</cdnaseq>

Protein Sequence

<aaseq>MDKTTTSDLVLDNDNIGSNAGSAQEPLTTNGKTSGVRNRYKQTV KRGRKGSQISPSKTYPLRSSHSNVRVLRSASKKKNETPIVPTNDNTAVQRVAKKRKRS KPLRPAPSRVLRSTSEKKNKAHNELLNDGAGVQPAEKKRKVGRPPKGGTPKDDYLMIR KRVRYVLNRMNYEQSLIQAYASEGWKGQSLEKIRPEKELERAKVEILRCKSRIREAFR NLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTLKNDIILCDGICDRGFHQYC LNPPLLAEDIPQGDEGWLCPACDCKIDCIDVLNELQGVKLSIHDSWEKVFPEAASFLN GSKQIDASDLPSDDSADNDYDPTLAQGHKVDEEKSSGEDGGEGLDSDDSSSEDSESSE KEKSKTSQNGRTVDDLGLPSEDSEDGDFDPAGPDSDKEQNDESNSDQSDESDFTSDSD DFCAEIAKSCGQDEISGPSSSQIRTVDRTDGSGFDGEPNAENSNLAFMETELEQDMVL PISSKRQVERLDYKKLYNEAYGKASSDSSDDEEWYGNSTPEKGNLEDSETDSLAESPQ GGKGFSRRAPVRYHNNEHTPQNVRPGGSVSDQQTEVLCSNSNGSTAKNRHFGPAINQK LKAHFKEDPYPSRATKENLAQELGLTFNQVTKWFSSTRHYARVAATKKENNIENHTAE NNNNTNTVDSIQLRGSNDIVSVDRNDMVSEERTGQSNLNEGTPLRSDTSCGQSVAVTP MVHPENQGNDSSSNVRTPNAKSAEKLIPGLENSDEARRKAVQRELRKMKTGR</aaseq>

Gene Sequence

<dnaseqindica>2582..3147#3260..3425#3504..3627#3712..3824#3923..4531#6933..7223#7937..8026#8119..8538#gttggcacttagcaggcggcggctgctgctgcggcggcgcagggcggcggcggtgcagagcggcggcgcacggctgaggcggcggcgtagtcggcgctctccttccctgcttcttccctcctttttcctcccaaccccgactcccggcgaccgagggctgcagctgagggcggcgcgcggaggcggaggcggcgggcgcacggctgcggaggctgctgaggacgagcgcgacaacggaggctgcgcgcggcggaggctgacggcggtgaaaggttggttttcccgaatccctaatgtatagtgtgtatatatattttacagaaaccaaaccctaaatattccctcatatgttgagttctattccggttcatttatgtacggatgattgtatattttggttgattgcttggtattaagcaatggaaacttgggtaactttcagatctgaaatttaccccttaggtgtgtcaaatttcagatttaagcactagggacgttgagcattttgtttcactggccaagtccgatgtccataatttcagttcgcattttagaagtcattgagaaattccagatttaagcactgcgaccatgagctattttagtttgcatttgaggagccgttgagcaatctgtatcatctgagaactagtgcctatctctagtaatttttttcatgaatttagagaacttttaggtccggttttcatgggttttcacttatttgttggttttcatgggatatttcccctatttagaatgtatcatctattttagccatgtagagaacatgccaaattgcattgagtcttatctcagttgttcaacctatgatttatgttagtattgagaaaagatttgtgtgagtgagtggattaaaggcatggatcaaaatgtgccatcaaagggtgttaaaatgcccatggcctcagcttattggaatgactacaacacaagagttgtgtgagatttttggtgatcaagtagttgcggctgattgttcaaatacccatttatccaatccttggtacggccaagtcattgagcaatttgccgcaagaacatgttttgaggactaggtttcaaattaagaacaaatgggataaacttaggacttaatacaacagttggaagtagttgaaatcacaaataggtttgggatgggatgacacaaagcagacagtcaaggctactgcagaactatcattgagagagatccttcggtgtatggaagatgaagtggcgggttctcctcaagatgcttagctttccaatgtggaaacaaaagatagttgtggcggcaacaatggcattgcacaatttctggatctagggtttgttatgcacaacattgcattgtagctgctttaaagccttctttcctatggtgtgaatttaaagaaagtagtatgatgttgtcatgatacttgatgttatgtggtcattaagttttgtgaaaggtggtggctttaggcctattgagatccagagcggtggttgaagaggtgtggagtaacaggatctcagtaacctttgtgtgtatgagggtatcagaggcattagtttactagctgtctccaattgcgcctccatctctctgtttttttcttcttactagaaaaaatacctgtgcgttgcaacgggtgaaggttcttttaattattattatacggtttagctaaggtgaacgaccttaaaaacgaacgaccttaaaaaccgactcaaacacatatatgtatttccaaaagcgagtgaatttaaaaaccgactcaaacatggatgacgtaccaaaatgccgggaaaaacatcttcaatttttataatagtagagatataaataatgtgcaaaaagcaatgatgccgagatttgttacgttacctattaacatgttccattctaattgattattacagcaaacatataatgttggttcattgaaccaacttcttaggcaaaacaactcataggtacatgaagagtccgataggatgacactctattcattaattactgaggtgaatgtgtatatgctacatcaaattgatttgaatataacttgtatgtagatcccacacaatgaaaagatgttggttccatggccatttccccataattacacaaccttgtatgcttagtatgatggagtattatttaaactgtgttttgaaccatcaataagaaatgtccatgcaaagcttgatttataagataggctactgttttttagagcactggtacatgtagtaaacaattctactaaactcctacaaacaaaattctcaactgtttgatttaactagatgtgagttacaggagatctagatttactcacagcatgccacatcattgtttgtaagagttttgtaagataaaatttggatgtatagccttttccttttttattttgtgctgctaataatccttttttgtgttttatttgctacaggcacatgctcatttatctagactgtatcttggttataaccccttcctcaaagcatttatccaggacttccctaagcttatcaagactgatctatctgttcctacagaggaggtccatttgcagctatcatttgtatggataagacaactacttctgatcttgttttggacaacgacaacattgggagtaatgctggttctgcacaggagcctcttactaccaatggtaagactagtggggtcagaaatagatacaaacaaactgttaaaaggggaaggaaaggctcccaaatatcaccaagtaaaacatatcccctgagatcttcacatagtaatgtcagggtgcttcgctctgcctcaaaaaagaagaatgagacacctattgtgcccacaaatgataatactgctgttcaacgagttgcgaagaaaaggaaaagaagcaaacccttgagacctgcacctagcagggtgcttcgctctacctcggaaaagaagaataaggcacataatgagcttctaaatgatggtgctggtgttcaaccagccgaaaagaaaagaaaggtaggcagacccccaaaaggaggaactcccaaggacgattacctcatgatccgaaagcgagttagatatgttttgaatcgaatgaactatgaacaaagtttaattcaagcctatgccagtgaaggttggaaaggtcaaaggtttgtgatcgttaaacaattaatttttcttcacatactcttaccattttttatcatattggttaactgcagccatcttcttacactggtttttaatcctataaatatttagcttggaaaaaataagacctgagaaggagcttgaacgagccaaggtggaaattctgcgatgcaagtcaagaatacgggaagcttttcggaatttggattccctcctatctgagggaaagctggatgaatctatgtttgattctgctggagaaatatctagtgaagatgtaagccatcccattttgttcttgaaatctcctcacttcatgtattgtcaccttaattcagattcatcttggttgcagattttctgtgctgcatgtggttcaaaggatgttacattaaaaaatgacataattctttgtgatggaatctgcgacagagggttccaccagtattgtttaaaccctcctttgcttgctgaagatagtaatacccattacattttcctttatatattgaaagctttattagcttgtgttgttatttacctgatcaaatgtgtttttttagttccacagggggatgaaggatggctttgccctgcatgtgattgcaaaattgactgcatagatgtattaaatgaactccaaggggtcaaactctctatccatgactcttgggaggtaaaacctataaactatcctgttagtagtaatgcactatcaatcttatgttgtcttcaacataaatgagagcacataacttcatctattctttgcagaaagtttttcctgaggcagcatcctttttgaatggttctaagcaaattgatgcgtccgatcttccatcagatgattcagcagacaatgattatgaccctactttggctcaagggcacaaggtggatgaagaaaaatcttctggagaagatggtggtgaaggattagattctgatgactcatcttctgaggattctgaatcttctgagaaggaaaagtctaaaacttcacagaatggaaggacagttgatgatcttggtttgccttctgaggattcagaggatggtgactttgatccagcaggtccagattccgacaaagaacaaaatgatgaatcaaactcagatcagtcagatgaatcagattttacatctgactctgatgatttttgtgctgagattgctaaatcctgtggtcaggatgaaatctcaggcccttcatcatcacaaatcagaacagtcgatcgcaccgatggaagtggttttgatggtgagcctaatgcagaaaattcgaatcttgcatttatggagacagagctagagcaagacatggtgctaccaatttctagtaaacgacaagttgaacgtttggattacaaaaaactgtataatgtatgtatcctcatcctgtttcttctatactgtgaattggttttctcttaccaatgtttgattagttactactttcaaatctttctttctgctgtttaatgaaaaacaatctcctagtataggaaataaatgtaattgaataagaaaagacataccaagcaaacaattagggggacaaatatatggctcataagtcataatactacatgtacgctcttgtaaaaagagcactacatgtaccacctcacataggttaggtcataaactgtgcagcatcttttagtatggttgcttcctttttgtgaaccatgctttgctaccaaagtggtttttaagttatgctatgctaacatgctgataaaatactttggtgcattaatggtgttaacctggtgcatctttgatgtatatctaaacaagacattatgtgcatgcctggatgtgtatttacccatttgtgcatcttcggaattagatatattactcgcttcgctctctttaaaggggcaattgcttatttgacctcgttttgaattgtaattgccgatttgaccctactttttgaactttgcttatttgaccctcattttcgagtacgaagctctggtctgaccctattccgtttgtgtgaggtgacggtgttaattttggggtaaatagtccattttgcccttgcttatttggccctgttatatcttgtttgtttgcttgtttgacctaaagtttggataatataaaaaaaaatctctttccccggcggcggcggcggcggcgcacccgcggaggaagacggaggccggcgcgcgctgggggggagagagcggcgccctgtgctcttcgccacagcgtcgtcgtcgtcgttgccgaccggtggcggcgcgcgcagaagaagattgaggccgatgcgcgcggggagggagggagcggctccctgtgatcttcgccgtggcgtcgtcgttgtcgttgttgctgacccggcggcggtgcgcgcgcggaggaagacagaagccggcacgcagacggagggaggaaggcgctggagctcgccggcgtgcggagggcgggcggcggcatcacgcgcgcggagaaaggaggaggctggcgcgcgtggagtggtgacggcgcggcgccgaagctcaccagcttgcgggagagaggcgccgccgccgccggatctgcggctcgtacactcaacagccgccggatccaccgcttgcacaccaccacggcctgagctccaccaccgttgctcctcttcctcgtcatcgagctcaccgtcgccgccacgacagctcggcgccaccgcccccacagctcggcgtcgccgcccccacagatcggcgccgccccgcgccccatcagaccgccgccgccctccacctccacagcgggcgccggcggggctgtacatcacgccgctgccgccgcctcctcagctcgccgccgccgcccccacagatcgttgccgccgccccctcagatcggcgccgactcggaccccctcaaagcgccgccgctgccgccctccaccacaacgagtgggcgccggcggggcagtgcttgacgccgccgccgccgccccctcagctcgccgccaccgccgcccccttagctagccgccgccgctgcacgcacgagtgagagagtgagagagaggtgagaccgtgagagtcacgcacgattgagagagagagagagtcaaaatagggtttggagggtattttcgtcattaggaactcttgaaacattttctttttaaaaaaaaatcgaaccctaacggagtcatcaaaagagggtcagacggaagcttcgtactcgaaaaagagggtcaaataagcaaagttcaaaaagtagggccaaatcggcaattacagttcaaaacagggtcaaataagcaattgtccctttaaaatattaatgtaacacctgtgccttgctaatttgctattgacttagtacccagcacatcaatgtgcctttgctgcagtcgcgctggttcctttcgagttgagatctgccttagcgcattccgagcttcactgcaggccagttggcaccaataccaacattctcggcctacatcataccctaactgagaatagtgataggcctaaatctcacaccaggcattgatgaaccaaatcctattttatttcttctccagtgtttcttttctagttgtagccagagcacaagccaacatttccaacggaagcatatttgttgatgctgttttgtactaccgtttgccaatgtttattggctttacgcatgtagccctttaatgggatttacaattacaattagtgatattcaaactgatgcattcttgattaagaaaacaatcagaatctaatgcttggacattactcacttcacattttcatgtggggatctacaggaggcttatggtaaagcatcatctgattcaagtgacgatgaagagtggtatggaaatagtacacccgaaaaaggtaatttagaagacagtgaaacagattcgcttgctgaatcacctcagggtggaaaaggattctctagaagagcaccagttaggtaccataataatgaacatactccacagaatgtaaggcccggtggttcagtaagcgaccagcaaactgaagtactttgctccaatagcaatggtagcacagccaaaaacagacattttggtcctgcaattaatcaggtataaatatcaaataatcaaatgtctcattatgttagacaatctccagtcaacaaataagtgatgctttgggagctgcatggtcaaactttatgattctaactattgttatctctagggatattagatcatgcataatctaaagtgtaggtttgtctcaaaagtacttttgtaatattatacttttatcattctttataaacatatcgtacaacaaaaactagctgaattcgtcatgcaattacgtaggactaaattaaagtttactttgaagtattgttaggtagacaatctacttcagaatttgcatgggaatcaaattgcttgtttattttgttttattctgcattccagttattcttgtattgtatttggtgtgaactcttctaatatatttcaatccaagtttcagatatttattagttgtatttgacatgaattatttgttataatctatagaattttgtaatctggaccctcaggattgtcaatattgtagattcttttttccttttctccgatgatctggtaatatttaggccttgagaaataagaatgaacatggactccttcccaacttgttttaataaaatatgtagtagattggagaagtgaaagttaagttttgaacactgtcaatgcctaaaccaacctttatttgtcactggagagtatattgcttacattactaaattgatcattttttcatgcagaaactgaaggcacatttcaaggaagatccataccctagtcgtgcaacaaaagaaaatctggcacaagagttaggcctcacatttaatcaggttttaaaacagtgatctttgttcttcctcccatgagcacttcgcagggctgtcactgtatctctcctccttaatagagtttctgttgacaggtcactaaatggttttccagtactcgtcattacgcaagagtggcagccacaaaaaaggagaacaacattgaaaatcatacggctgagaataataacaataccaacactgttgatagcatacaactgagaggatccaatgatattgttagtgtagatagaaatgatatggtctccgaggaaaggacaggacaaagtaatctcaatgaaggtactccattaagatcagataccagctgtgggcagagtgtggctgtgactcctatggtacacccagaaaaccagggcaatgattcctcaagtaatgttagaacaccaaatgctaagtctgcggagaaattgatccctggactggaaaattcagatgaggctaggcgaaaggcggtacaacgggaactgagaaagatgaagactggcaggtgaaactccctagtgttcgagttatttgaccagatgtgcagagaagcaagtttttgtatgctgcctagattgcttttaatcagatgtgcagagaagcaaagattttttttccttcttgtttgtggtcgcaaaaaagcctgattgttgtagctgctatgtttgttccctttggctgtccatccagaatttctgataagatgacacttggaagcacatcctgcagcactccagttacaggaatgggttcagttgactgtaacagtttagcatagtccgtagtggacagtagctgtgttgtttgtcgtgccctgtagtcctgtactaccttgaattaggactgctaagtgaaccgatacaagtacttgtgactgaaatctatacctctttttttctttccaccttgggaatttgtagaacaaaaccgatgtctgatgatatgctatctaggaatagcaactgttgtatttttgttcctgtttagggagatttagattctgatgagc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0229300, RefSeq:Os06g0229300