Os06g0237200

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Revision as of 09:11, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0237200| Description = Similar to DNA polymerase lambda| Version = NM_001063782.1 GI:115467295 GeneID:4340604| Length = 5068 bp| Definitio...")
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Gene Name

Os06g0237200

Description

Similar to DNA polymerase lambda

Version

NM_001063782.1 GI:115467295 GeneID:4340604

Length

5068 bp

Definition

Oryza sativa Japonica Group Os06g0237200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:7127404..7132471

Sequence Coding Region

7127404..7127502,7127578..7127662,7127757..7127824,7128180..7128260,7128989..7129079
,7129426..7129514,7129933..7129986,7130090..7130269,7130359..7130421
,7130759..7130889,7130991..7131084,7131527..7131868,7132141..7132293
,7132381..7132470

Expression

GEO Profiles:Os06g0237200

Genome Context

<gbrowseImage1> name=NC_008399:7127404..7132471 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:7127404..7132471 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>gcggcggcggcgaagttggaccccgacggcatgttccgcggcgtctccgccttcgtcgtcccccacgccgtccagtctcgccgcctcgaggtgtggaagcagaggctggcgcagatggggggacgcgtccaggagaagctcgccgccaagggcggcggcggcgcggtcacccacgtcctggccgccgacgccaaggcgctgctccgggagctcgacgccgcctggctccaccgctttcgcgggagcgtggtgtcattcgagtggctggaggagtgcctcaaatccggggagaggctaccggagcacaagtttgctatcaactacgaagaggaatttaagccgaagaaggaaggtggtgctgcaggttcaggtgtgttgcagtctgcaaagaggagcaaaatatcatcagacggtcctgagaatcggaaggaaactgctgggggtaatcgagaatctcgagatgcaattgcacatccaaatgaagattcggatgttgtaaaggggcctagcacgtgtacaagtagccaaagtgcctctggagattctaaggaaaccatagcttctcaaaatgcattcaaagctgaggaagcctcttctggagaatcctcaacgtatgctcctccagacttgaacaggaacataactgagatttttggaaagctgatcaatatatatagagccctgggagatgaccgaagatcatttagctattacaaggctattccagtgattgagaaattgccattcaaaatagaaagcgctgatcaagttaaagacctccctgctattgggaaatcattgaaagaccatattaatgagatagtaaatacaggaaagctttccaagctagagcactttgagaatgatgagaaggttcgaactgtcagcctatttggcgaagtttggggtgttggtcctgcaactgctctcaagttatatgataaaggacatcgtacactggatgaccttcaaaaagacgattcacttacaagtgctcagaggattggcctgaagttctttgacgatatcaaacaaagaataccccgacatgaggttagtgagatggagaagcttttgcaagaagttgggactgatatcttgcctggggtgataattgtatgtgggggatcatacagacgtggaaaatcttcttgtggtgacatggatattattatcactcatcctgatggtgaaagtcatgtaggctttttaccaaaatttgttcagcgcttgaagggcatcaattttttgagggaggatcttattttcagcatacacagcattgagggaactgattgtggagttgacacatattttggtctttgcacatatcctgggcgtgagctgcgccatcgcatcgacctcaaggtatacccaaggaacagacatgcatttgggctgcttgcttggactggcaatgatgttctgaatcgacgattaagaatactagcagattccaaaggctacattcttgacgacactggtttgtatcttgctacaccgggcagtggtggaaagcgtgggggaagatcagatgctataattaattgtgacaccgagaaggatgtgttcgatacacttggattcccctggttggaacctcacgaacgtaatctctag</cdnaseq>

Protein Sequence

<aaseq>AAAAKLDPDGMFRGVSAFVVPHAVQSRRLEVWKQRLAQMGGRVQ EKLAAKGGGGAVTHVLAADAKALLRELDAAWLHRFRGSVVSFEWLEECLKSGERLPEH KFAINYEEEFKPKKEGGAAGSGVLQSAKRSKISSDGPENRKETAGGNRESRDAIAHPN EDSDVVKGPSTCTSSQSASGDSKETIASQNAFKAEEASSGESSTYAPPDLNRNITEIF GKLINIYRALGDDRRSFSYYKAIPVIEKLPFKIESADQVKDLPAIGKSLKDHINEIVN TGKLSKLEHFENDEKVRTVSLFGEVWGVGPATALKLYDKGHRTLDDLQKDDSLTSAQR IGLKFFDDIKQRIPRHEVSEMEKLLQEVGTDILPGVIIVCGGSYRRGKSSCGDMDIII THPDGESHVGFLPKFVQRLKGINFLREDLIFSIHSIEGTDCGVDTYFGLCTYPGRELR HRIDLKVYPRNRHAFGLLAWTGNDVLNRRLRILADSKGYILDDTGLYLATPGSGGKRG GRSDAIINCDTEKDVFDTLGFPWLEPHERNL</aaseq>

Gene Sequence

<dnaseqindica>4970..5068#4810..4894#4648..4715#4212..4292#3393..3483#2958..3046#2486..2539#2203..2382#2051..2113#1583..1713#1388..1481#604..945#179..331#2..91#ggcggcggcggcgaagttggaccccgacggcatgttccgcggcgtctccgccttcgtcgtcccccacgccgtccagtctcgccgcctcgaggtcgcggctccaccgagcaatccatcccaacccccaccaactctctctcctgtgcttagggtttcctggctttcgtcgtcggtgcaggtgtggaagcagaggctggcgcagatggggggacgcgtccaggagaagctcgccgccaagggcggcggcggcgcggtcacccacgtcctggccgccgacgccaaggcgctgctccgggagctcgacgccgcctggctccaccgctttcgcggggtaatcggcttggctccctagcttgaaaccctaatctcctctcggcaagcttggtgtgccttgctaccatctgcattttcacagcccaaatctactgctagtagtagtactacattgagttatagagatttcataacatggaaagatttctgctaacatcaagtgattgtgtttctttctataaggactggatttttgttgcagagagatctcggctaacatcaagtgattgtatttactactataagaactgattttttttttgattgcagagcgtggtgtcattcgagtggctggaggagtgcctcaaatccggggagaggctaccggagcacaagtttgctatcaactacgaagaggaatttaagccgaagaaggaaggtggtgctgcaggttcaggtgtgttgcagtctgcaaagaggagcaaaatatcatcagacggtcctgagaatcggaaggaaactgctgggggtaatcgagaatctcgagatgcaattgcacatccaaatgaagattcggatgttgtaaaggggcctagcacgtgtacaagtagccaaagtgcctctggagattctaaggaaaccatagcttctcaaaatgcattcaaagctgaggtataagcatggtcttataaattatagtacaaactaactgggctctaaagtctgggttatgttgttttgctgcacttatcctctttggtttgctcaaattcgtacaagctccattctgaacatatgtaaacaaaaaagaggaaacactttttagcttctcctttttgtaattagcttactctaagctctaagttacatctacactgacttcaacatgactagacttgagactgtttttcttctgctataaaaatgtacgcagttgcctttatctgttcaaaaatgaaaacactgctgtagcaactttaagacctttggtggtcagctgtatatctattttgcaccctcaatggtgatatattgctctgtaccatacaacatataactcctgaaccctgaggatttatatttcctagtgttgattcattgcttatataactaggaagcctcttctggagaatcctcaacgtatgctcctccagacttgaacaggaacataactgagatttttggaaagctgatcaatatatatagaggtaaggacattgtacagaaatcttctcattcttcttattcattgtattaacatttcatatactttctctacaaataacatttccttccctttcacttgaagccctgggagatgaccgaagatcatttagctattacaaggctattccagtgattgagaaattgccattcaaaatagaaagcgctgatcaagttaaagacctccctgctattgggaaatcattgaaagaccatgtatgttaatccttttctaccattaattcatattaattggtgatttacaagtcaacatatatatttttggcctttgtacaagttcatgattctatttttttatccactatggtctatgggtgatgtagtaactgtgtcataactctgttttcttaaaaatatgttggtcttctattttgttttgctgttgagggctgaaaatttattcacaccttcattgagcaaacaggttctaaaagtaccacagaagttccaaggaaaatatgaattcatacattcatcgttctacatgtaatatctcaggtgtttgattgtctaactacccttgtatatgcagattaatgagatagtaaatacaggaaagctttccaagctagagcactttgagaatgatgagaaggtaacttggttttcagtgaacaggagtagctcttaagcattatccagccatactccctgatatttactgatttgcatatcaccttaaaggttcgaactgtcagcctatttggcgaagtttggggtgttggtcctgcaactgctctcaagttatatgataaaggacatcgtacactggatgaccttcaaaaagacgattcacttacaagtgctcagaggattggcctgaagttctttgacgatatcaaacaaagaataccccgacatgaggtatgtattctgtaagcccattgaattgttttcttttcctattattactagctattcgaagtacaatctaacattacacgtattttactctcctgttatctaggttagtgagatggagaagcttttgcaagaagttgggactgatatcttgcctggggtaagttccatatagtatttaaaggaaccatttgtctccattacatataactacacaagccattcaaaaactaatactgaagcatcagttccatgttcaatttgtctcaacatatgcggtggttattgtttcctgtagcagctagttgcttacacctattttttgtagttccctattagtctgaacctgactacttattttgtttggagaactagatgggttggttcatcaccattcctccagtcatcctctgaaagtacacatccagtacaaaaatgaggaatggggtcatcctatcgagatcctaggccgatttgattcttgaaaacaaatagctcatatatttaagattttagtagaacaataatttcccttaagtgattattgggttgttatacatgatcttttttatttggaggtgataattgtatgtgggggatcatacagacgtggaaaatcttcttgtggtgacatggatattattatcactcatcctgatggtgaaaggtatacttcaaaactttcaaaaattgttggttattgagtatgccacgtgatttttatttaagtatgatgagaaattacccatctgctgtgcgttcagtgtattctattgaattcaacactgaaccttggcaccacaccaaacagccatttagttattttacagtcatggaaagttattttctggcaacttgtaggtttggtttatcaatttgtcatctatcataagcataattattcattatgaccaagtttctattatgcggtctgcacacaacacatttttatataagaacatcaatgattaatcatctggacattgtaaaagggaccatacatttttctccagtcatgtaggctttttaccaaaatttgttcagcgcttgaagggcatcaattttttgagggaggatcttattttcagcatacacagcattgaggtaagttcttggccactactttcagagattttgagaagagtgattataaacaaatgggaaagatcacatttggtccctccacttctgcttggatttaatttatactctgaacatcaataccgcttagagcacatgtttcaaccataaaaactgttcaaataacatcccgagtatattttttatggtgattttgggtgacaaggtatcctatttacttatgggttgatatgctttaataatttaccaaagaaaatttttgttctggttttttccccaaatgaggtggtgtggataccatgattgaaaaggcagccacgtaatccagaaacactcaagaacttctatgaatgtaatttacactgctttgatagtcaatggatgaaagcaaaacaatattaaagttctggatgtaagctagaatgctagatccgagcaagagttaaaggaccaaaagtggactttttcctaaacaaattgagaaaaaaaaagataagatcatataaaagtgggctaaatgttcatatttcaaagtgctatcacacaatattggttttgtagctattaagaatatattttatgagaaagaatgaatgatcagtttttaatcttgaaggctttttaagatcaaaatatatcttataaaaatcgatggaagtagtacctttttaacatcttgagaaattgtgtaagaagatttgaacgaactggcattgctcatctcaatgcagggaactgattgtggagttgacacatattttggtctttgcacatatcctgggcgtgagctgcgccatcgcatcgacctcaaggtataatattattccagcaggagtaatttggttcatgtcatcttcatttgacaggatttgtttcttattgattaaaactaaacaaatttcaatgttccttttgctgtttgcatctccagtgtcttcaatagtcttggtcttatgttcgtgacacatcaacaaagcactgctttgttctttgtccttttatttatggcattggcatgaatgtgattataaacttacaatccttcatcttggtaaataaaacaacatttatagtgatttccccatcgactatgccatgcaatatatgctgcataacattcatgtaccaactcatgctgataaaatggtgacaattcgatgttagaaggtatacccaaggaacagacatgcatttgggctgcttgcttggactggcaatgatgttctgaatcgacggtatgcatttgagctctttagtcatacacgttatcatgatcaggaatgcaagaccacagcttttttttacaagtttcgtaattgaaacatgcagattaagaatactagcagattccaaaggctacattcttgacgacactggtttgtatcttgctacaccgggcagtggtggaaagcgtgtatgtacatgtgatttttcattccaaatccatacaagttgtttgctttgctccattcattgtgagtttttgcaggggggaagatcagatgctataattaattgtgacaccgagaaggatgtgttcgatacacttggattcccctggttggaacctcacgaacgtaatctctag</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0237200, RefSeq:Os06g0237200