Os06g0245700

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Revision as of 09:12, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0245700| Description = Similar to Glycosyl hydrolase| Version = NM_001063812.2 GI:297605502 GeneID:4340636| Length = 5739 bp| Definition =...")
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Gene Name

Os06g0245700

Description

Similar to Glycosyl hydrolase

Version

NM_001063812.2 GI:297605502 GeneID:4340636

Length

5739 bp

Definition

Oryza sativa Japonica Group Os06g0245700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:7563841..7569579

Sequence Coding Region

7564518..7567274,7568433..7568465,7569185..7569334,7569420..7569578

Expression

GEO Profiles:Os06g0245700

Genome Context

<gbrowseImage1> name=NC_008399:7563841..7569579 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:7563841..7569579 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>gaggtctcctacaagagcgacgagtgggacggcgagaagctcaaggtgtttgtcgcgccccactcccacaacgaccccggatggcgtctcaccgtcgaggagtactacgagaagcagtcgcgccacatcctcgacaccatcatcgagtcgctctccaaggattcgcgtaggaaatttttatgggaggagatgtcatacctggagaggtggtggcgcgacgcccctcggaagaagcaggaggcgttcaccaagcttgtgcgtgatggacagctggagattgtcagtggagggtgggtcatgaatgacgaggcaaactcccactattttgctatcatagagcagatgatggagggaaacatgtggctcaatgataccattggagttgttcctaaaaattcttggtcaattgatccatttggttattcagctaccatggcttatctgctgaggagaatgggtttccacaacatgttaatccagcgaacgcattatgaattgaaaaaggagcttgcgatgaataagaaccttgaatatttatggaggcagaactgggatatagatgaaacaactgatatatttgttcatatgatgcccttctattcttatgacattccacacacctgtggaccagaaccagctatctgctgccagtttgactttgctcgaatgcgtagcttcagctatgaatcttgcccgtggagatttgatccagttgaaacaaatgctaacaatgtgcaagagagggcaatgaaacttctagatcaatacaggaaaaagtctacgctgtacagaacaaatacacttctcattccattgggggatgatttccggtatgttagtacagaggaagcagaagcacagttccgcaattatgaaaagctttttgattacataaactctaatccccatcttaaggctgaagtaaaatttggtaccctggaggattacttctccacgctgagagatgaagctgaaaggataaactatacacgccctggtgaactggtttcttctgagctgccaggttttccaacactttcaggtgatttctttacatatgctgatagaaatcaggattactggagtggttactatgtatcaaggccgtacttcaaagcagttgaccgagtactagaacagacactacgtgcctcagagattctgagttcttttgttctaggatactgtcagaagcttcaatgtgtaaaactccccatcagcttttctcacaagctaacagcagctaggaggaacctggcactcttccagcatcatgatggtgtaactggcacagctaaggatcatgttgtagtggactatgggactcgaatgcacacttctttgcaagacttgcagctctttatgtccagggcggttgaagtgcttttaggtgatatccatgacagatctgatcctaccttactatcgcattttgagccagtgcaggaacggtcaaaatatgatgttcaacctgtatacaaggttctcaaccctcatggagggaaggcacattctgttgtcctttttaacccattagagcaaacaagggatgagattgttatggttgttgtaagtaatcctgatgtatctgttctcaattcaaatggttcctgtttgagaagtcaaatttcccctgagtggcagtatgttagtggcgaaaaggtttctactggccagcaccgtctttattggagagcttctgttcctgctcttggtttggagacctactatgttgctactgggtacgacgattgtgcaaaggcgactccagctgtggtgaaggcattcacaactgctgggcaatttccttgccctgaaccatatgtttgttcaaaactggaaggaaaaacagtggagatgaagaactcttaccactctctctcttttgatgtaaggcatggcctcctccagacagtaactcgcaacaaggatggggaacacaccgatgttggtgaagaaattggcatgtaccgcagccacggtagtggggcatacttgttcaaaccaataggggaagcacaatccattgttgaggaagggggatatttcatccttagtgaagggccattggttcaagaggctcattcccttccaaagacacagtggcataagtcacccatctcacatagcacacggatttatagctgtggagactctatacaggatatgctgattgagaaggaataccatgttgaacttgttggccatgtatttaatgacaaggagttgattgtcagattcaagacagatattgacaaccaaggagtcttctattctgatctaaatggctttcagatgagtaggaggcagacatatgataagatccctttgcagggcaattactacccaatgccatcacttgcatttttacaggattcgctgggcaatcggttttcagtacactccaagcagtcactaggggcagcaagcttaaaaaatggatggctggagattatgttggatcgtagactaactcaggacgatggtcgtggtctgggccagggagtggtggacaaccggcctatgaatgtaatcttccacctcctcagggagtcaaatgtttctgccttgcctaaaactcacagcttgctaactctacaaccatctcttctctcccaccgtgtgggtgcacacctgaactacccaatgcatgcttttgtgagcaaaaaagctcaagaaaaatcgttcaagcttgctcaacaaacatttgctccattaacttctcctttgccctgtgatgtacatgttgtgaacttgaaggcccctcagcctctaaaatttcaccatgctgaagcagtcgaagcaagatttgcccttctgttgcagcgaagaggctgggatgcatcattctgcagaaggggcggattaaactgtacaactattggagaagagcctgtgaatttgttctacatgttcaaagatctggccgttctggatgtgaaggcaacttctctgaatctcttacatgatgaccctgaaatgctagggtaccttgagcaaattggtgatgtagctcaggagggaaacgttcttatctcaccaatggacattcaggcatacaagctggacctacagccaccatcatcacaggaagagtag</cdnaseq>

Protein Sequence

<aaseq>EVSYKSDEWDGEKLKVFVAPHSHNDPGWRLTVEEYYEKQSRHIL DTIIESLSKDSRRKFLWEEMSYLERWWRDAPRKKQEAFTKLVRDGQLEIVSGGWVMND EANSHYFAIIEQMMEGNMWLNDTIGVVPKNSWSIDPFGYSATMAYLLRRMGFHNMLIQ RTHYELKKELAMNKNLEYLWRQNWDIDETTDIFVHMMPFYSYDIPHTCGPEPAICCQF DFARMRSFSYESCPWRFDPVETNANNVQERAMKLLDQYRKKSTLYRTNTLLIPLGDDF RYVSTEEAEAQFRNYEKLFDYINSNPHLKAEVKFGTLEDYFSTLRDEAERINYTRPGE LVSSELPGFPTLSGDFFTYADRNQDYWSGYYVSRPYFKAVDRVLEQTLRASEILSSFV LGYCQKLQCVKLPISFSHKLTAARRNLALFQHHDGVTGTAKDHVVVDYGTRMHTSLQD LQLFMSRAVEVLLGDIHDRSDPTLLSHFEPVQERSKYDVQPVYKVLNPHGGKAHSVVL FNPLEQTRDEIVMVVVSNPDVSVLNSNGSCLRSQISPEWQYVSGEKVSTGQHRLYWRA SVPALGLETYYVATGYDDCAKATPAVVKAFTTAGQFPCPEPYVCSKLEGKTVEMKNSY HSLSFDVRHGLLQTVTRNKDGEHTDVGEEIGMYRSHGSGAYLFKPIGEAQSIVEEGGY FILSEGPLVQEAHSLPKTQWHKSPISHSTRIYSCGDSIQDMLIEKEYHVELVGHVFND KELIVRFKTDIDNQGVFYSDLNGFQMSRRQTYDKIPLQGNYYPMPSLAFLQDSLGNRF SVHSKQSLGAASLKNGWLEIMLDRRLTQDDGRGLGQGVVDNRPMNVIFHLLRESNVSA LPKTHSLLTLQPSLLSHRVGAHLNYPMHAFVSKKAQEKSFKLAQQTFAPLTSPLPCDV HVVNLKAPQPLKFHHAEAVEARFALLLQRRGWDASFCRRGGLNCTTIGEEPVNLFYMF KDLAVLDVKATSLNLLHDDPEMLGYLEQIGDVAQEGNVLISPMDIQAYKLDLQPPSSQ EE</aaseq>

Gene Sequence

<dnaseqindica>2306..5062#1115..1147#246..395#2..160#ggaggtctcctacaagagcgacgagtgggacggcgagaagctcaaggtgtttgtcgcgccccactcccacaacgaccccggatggcgtctcaccgtcgaggagtactacgagaagcagtcgcgccacatcctcgacaccatcatcgagtcgctctccaaggtcgctgcgatctaaacccagattcggtgttagggttttagtgcggtttttgatgcctaactttaacctttttgttgtcatgtaggattcgcgtaggaaatttttatgggaggagatgtcatacctggagaggtggtggcgcgacgcccctcggaagaagcaggaggcgttcaccaagcttgtgcgtgatggacagctggagattgtcagtggagggtgggtcatgaatgacgaggtgagacggaaggaaacatttgtggtttatacatgatcttaggagtagatggcagtttttgcttgtctaattgggttgccttttgtgtatttgttggcatttgaggcatggtatgcttgtcatttgttgcttggttatgaatggagtgaaatttcatttcatgctttacctgattgggccgtagtttcaatgctcaggaatcagttttattcgcattttatgttgtgtacacattgctgttttgaattatgcaaatgcgcttttgacgggtgatgcttctgaagttccaatttgttagtaaacatgttggagattcagcactagataaaggatcagcaacaactctgatgtgtctaatatgttttccttcaatattttacctcttgccatgagatacttggtatccattgtttaaataataaaatagaactcatgatttgaatatttgactgctgcataatttccatgttatttttccttgagaacagcatgtttcagagttacacaaatggagtattaagatcaattgtcagtttgatgaatgatctgtccggtattgcggttttctggatgatgtagaagtccttggagagatgctattttagttcaattgtttactgtgttatggatttctgatcagaagtatttcacacttctttctttttttttttccttttgaagaagaagctaaatgtaaccatctttctttctttgtgcaggcaaactcccactattttgctatcatagagcaggcaagtacactcttgactctttgtgcatcacatcttcttttatctcctctgtgctaattgctaaatgcgccaggttcttagcttcatttgtacctgatgcataaagaaatcacattatttattccttttcctattgtgtatatcactgacctgaaatacccataaaagtaaattgtacatatcgaaaaaacacttcagtacgtgctgcaaacatatgtttaatgctacgtgctatcatgctgctttagctatttgaactcacctgactgttcattattagcactgacactttgcatcgatagtacaatttaacaagcatacaatagtatggagtggacaaatgcaccttattctgttctccaattgaatgaagttaatacagttttagtttacaccatcttggtgacttggtctgtgtttagatggtgctcttgaagaaaaatacagggacagtatcgtagacagaatgttgcaatgtgcttgtattgcatgatttcactattcagtttcatgtttaataatttgtggagcaatccacacctcttctgattatcaaatgcatgaactcagaattgtctttttttacaagaaacccttgacaactagattcatcaatttcatggtgcgcacttagtccttagactttaccctttttaagatatcctggttgtattcacatatggaccatataatttttttaacgttttggttctgtattgttgaagttacattaatactttttaaaaatcactccaaaaggtacacaattccctccaacaaatccctcttttaatcgatcaagctgtgtcatagcttaatgtcgattttctttgtgttgctaatgctatctatgttggcctgaacattggagtcagggcagaagagtaatctaacaaatgaagcaaatatgctttatatcttgttcaaatccagctacatcttttgttttaatggaaacctgatgcttcaattttcatagtgcctgatttttttacggagacaaagtttgcgtacttctattttttactccaaagttgtgttactctgaccaacctgcaatatataatgaacaaatctctaattgtcagttatgtgactatagtatatgggctggaacaattatttaattatgccaatctttctattcttcgtcctcagatgatggagggaaacatgtggctcaatgataccattggagttgttcctaaaaattcttggtcaattgatccatttggttattcagctaccatggcttatctgctgaggagaatgggtttccacaacatgttaatccagcgaacgcattatgaattgaaaaaggagcttgcgatgaataagaaccttgaatatttatggaggcagaactgggatatagatgaaacaactgatatatttgttcatatgatgcccttctattcttatgacattccacacacctgtggaccagaaccagctatctgctgccagtttgactttgctcgaatgcgtagcttcagctatgaatcttgcccgtggagatttgatccagttgaaacaaatgctaacaatgtgcaagagagggcaatgaaacttctagatcaatacaggaaaaagtctacgctgtacagaacaaatacacttctcattccattgggggatgatttccggtatgttagtacagaggaagcagaagcacagttccgcaattatgaaaagctttttgattacataaactctaatccccatcttaaggctgaagtaaaatttggtaccctggaggattacttctccacgctgagagatgaagctgaaaggataaactatacacgccctggtgaactggtttcttctgagctgccaggttttccaacactttcaggtgatttctttacatatgctgatagaaatcaggattactggagtggttactatgtatcaaggccgtacttcaaagcagttgaccgagtactagaacagacactacgtgcctcagagattctgagttcttttgttctaggatactgtcagaagcttcaatgtgtaaaactccccatcagcttttctcacaagctaacagcagctaggaggaacctggcactcttccagcatcatgatggtgtaactggcacagctaaggatcatgttgtagtggactatgggactcgaatgcacacttctttgcaagacttgcagctctttatgtccagggcggttgaagtgcttttaggtgatatccatgacagatctgatcctaccttactatcgcattttgagccagtgcaggaacggtcaaaatatgatgttcaacctgtatacaaggttctcaaccctcatggagggaaggcacattctgttgtcctttttaacccattagagcaaacaagggatgagattgttatggttgttgtaagtaatcctgatgtatctgttctcaattcaaatggttcctgtttgagaagtcaaatttcccctgagtggcagtatgttagtggcgaaaaggtttctactggccagcaccgtctttattggagagcttctgttcctgctcttggtttggagacctactatgttgctactgggtacgacgattgtgcaaaggcgactccagctgtggtgaaggcattcacaactgctgggcaatttccttgccctgaaccatatgtttgttcaaaactggaaggaaaaacagtggagatgaagaactcttaccactctctctcttttgatgtaaggcatggcctcctccagacagtaactcgcaacaaggatggggaacacaccgatgttggtgaagaaattggcatgtaccgcagccacggtagtggggcatacttgttcaaaccaataggggaagcacaatccattgttgaggaagggggatatttcatccttagtgaagggccattggttcaagaggctcattcccttccaaagacacagtggcataagtcacccatctcacatagcacacggatttatagctgtggagactctatacaggatatgctgattgagaaggaataccatgttgaacttgttggccatgtatttaatgacaaggagttgattgtcagattcaagacagatattgacaaccaaggagtcttctattctgatctaaatggctttcagatgagtaggaggcagacatatgataagatccctttgcagggcaattactacccaatgccatcacttgcatttttacaggattcgctgggcaatcggttttcagtacactccaagcagtcactaggggcagcaagcttaaaaaatggatggctggagattatgttggatcgtagactaactcaggacgatggtcgtggtctgggccagggagtggtggacaaccggcctatgaatgtaatcttccacctcctcagggagtcaaatgtttctgccttgcctaaaactcacagcttgctaactctacaaccatctcttctctcccaccgtgtgggtgcacacctgaactacccaatgcatgcttttgtgagcaaaaaagctcaagaaaaatcgttcaagcttgctcaacaaacatttgctccattaacttctcctttgccctgtgatgtacatgttgtgaacttgaaggcccctcagcctctaaaatttcaccatgctgaagcagtcgaagcaagatttgcccttctgttgcagcgaagaggctgggatgcatcattctgcagaaggggcggattaaactgtacaactattggagaagagcctgtgaatttgttctacatgttcaaagatctggccgttctggatgtgaaggcaacttctctgaatctcttacatgatgaccctgaaatgctagggtaccttgagcaaattggtgatgtagctcaggagggaaacgttcttatctcaccaatggacattcaggcatacaagctggacctacagccaccatcatcacaggaagagtagtatgtcaggacagtatgcggattccgatctgtgctactaacaggagacgatggctttatccgtaataagtgatagttgcatcatgattctgctggaacatctctcctactcaaatctctgctcgctttgttgacgtacttcgtatcaacataaggtgatcttcaaaatgctctttagtcctaaatatatagaggtgttgggtgacctttgaagtctggatgttaccctctgaattcagcccggctgtttcctggcaaccttctgatatacgcaggtgcatatacttcctttcttctcggtgattgtttgacaaattggaaatttggggcacattcaagcaagcaaattgtagtaatttccatttctttttgctctagtgcagactagctgtgctattacagcttctgtatgctttgctactgtagtcatacagcgtgatatgccggctagtgctatcataataggaacctgaacctatatatgagcaaatttttcgtgtatctccttttggtatctgacttttgtagtgtgatcacagagcttgctggccaagacctgaaatagtctagacagttgattcttgctttgagagttttcacatgtacaaattatgactgtaaacattttctgaagatctctcgaaggcaggccttggttatttctggggcttatgtatc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0245700, RefSeq:Os06g0245700