Os06g0245900

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Revision as of 09:12, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0245900| Description = Transcription factor E2F/dimerisation partner (TDP) family protein| Version = NM_001063814.1 GI:115467359 GeneID:4340...")
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Gene Name

Os06g0245900

Description

Transcription factor E2F/dimerisation partner (TDP) family protein

Version

NM_001063814.1 GI:115467359 GeneID:4340638

Length

5826 bp

Definition

Oryza sativa Japonica Group Os06g0245900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:7583781..7589606

Sequence Coding Region

7583825..7584027,7584136..7584256,7584360..7584437,7584555..7584620,7584740..7584872
,7584958..7585025,7585114..7585186,7585281..7585342,7585424..7585817
,7589319..7589398

Expression

GEO Profiles:Os06g0245900

Genome Context

<gbrowseImage1> name=NC_008399:7583781..7589606 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:7583781..7589606 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgccgccgccgatgctcccccgcctcctccggaggtcgccccgcccgcgcccgcgcccgcccccgcgccggcgccatatcagccgccgcggctggcggtggccgacggagcgggaggtggcggcggcggcggcgggaagccgtgcaggcaccacgcgtacagccgcaagcagaagtcgctcggcctcctctgcaccaacttcgtggcgctgtacgaccgggaggacgtggagtcggtggggctggacgacgcggcgaggcggctgggcgtcgagaggcgccggatctacgacatcgtcaacgtgctcgagagcatcgggatgctcgtgaggagggccaagaatcggtatacgtggatcggcttcggtggagtccctgcggcgctcgcgaaactcaaggagatgtcactgagggcggtgtcaagcgtggcgtcaccgtcgctggatgaaacatctgctgctaatgtctcggatgatgaggatgatgacaagttagatgatgctgagggcgatgcggagagcgagaagctcagcctcagccagtccattgacaatccttctgataagcctgatgcacccccttgcaagcttcgatccgagcataggaaggagaagtcccttgggctgctcactcagaattttgtcaagctcttcctcaccatggagattgagacgatctcacttgatgaagccgcaaagcggctccttggagagggacatgcggcgaacaatatgagaaccaaagttcggcgattgtacgatattgccaatgtgctgtcttctttgaatcttattgagaagacacaacaggcggactcaagaaaacctgcattccggtggctgggccaggcaaaacggaatgaaggcgtcacggttgctttacccccaaccaagacgttgcctaacaagagagcatttggtactgatctgactaacattgacaataagaggggtaagttggactccacaatggagaacagaggcaagcccacgcaggatggtggcaacctattcaataatttgcagaggcaattagggcaagagaacaggagcgattttgtttatggccccttccaccctgctgttgcaaggaaacaagaacatggtaatcgcacagtacaagagaaggagaggaagagcattcaagactgggagaaccttgcttcttctttccgtccgcaatatcaaaatccaggactgaacgatctttttggccactacatggaagcatggaggtcatggtactcggatctcaggcgagacagagcatcataa</cdnaseq>

Protein Sequence

<aaseq>MAAAADAPPPPPEVAPPAPAPAPAPAPYQPPRLAVADGAGGGGG GGGKPCRHHAYSRKQKSLGLLCTNFVALYDREDVESVGLDDAARRLGVERRRIYDIVN VLESIGMLVRRAKNRYTWIGFGGVPAALAKLKEMSLRAVSSVASPSLDETSAANVSDD EDDDKLDDAEGDAESEKLSLSQSIDNPSDKPDAPPCKLRSEHRKEKSLGLLTQNFVKL FLTMEIETISLDEAAKRLLGEGHAANNMRTKVRRLYDIANVLSSLNLIEKTQQADSRK PAFRWLGQAKRNEGVTVALPPTKTLPNKRAFGTDLTNIDNKRGKLDSTMENRGKPTQD GGNLFNNLQRQLGQENRSDFVYGPFHPAVARKQEHGNRTVQEKERKSIQDWENLASSF RPQYQNPGLNDLFGHYMEAWRSWYSDLRRDRAS</aaseq>

Gene Sequence

<dnaseqindica>45..247#356..476#580..657#775..840#960..1092#1178..1245#1334..1406#1501..1562#1644..2037#5539..5618#aaatctctcctcccgctcgccgaaaccctcgccgtcgccgcgccatggccgccgccgccgatgctcccccgcctcctccggaggtcgccccgcccgcgcccgcgcccgcccccgcgccggcgccatatcagccgccgcggctggcggtggccgacggagcgggaggtggcggcggcggcggcgggaagccgtgcaggcaccacgcgtacagccgcaagcagaagtcgctcggcctcctctgcaccaagtaaacagctaacaaccctccccctcccctccgcgcagcttcgcgcaaccgctatagctttctcgaggttgatttggctggccctccctggtgtgtttggtttgctagcttcgtggcgctgtacgaccgggaggacgtggagtcggtggggctggacgacgcggcgaggcggctgggcgtcgagaggcgccggatctacgacatcgtcaacgtgctcgagagcatcggggtcaggaaaattttttcatctcctcgcctcgtctccctttcttggatttgaggagcgatcttgttctgcgttcgctaaacatttcttggccggtcgtgcgcagatgctcgtgaggagggccaagaatcggtatacgtggatcggcttcggtggagtccctgcggcgctcgcgaaactcaaggttaggaggatccgcatattctgttcttaccatagtgtcattgtatgctttgtgaggcgtaatcagatcggaatttcgatgtatttattgaattttctgttgtttcggtttggtcaggagatgtcactgagggcggtgtcaagcgtggcgtcaccgtcgctggatgaaacatctgctgctaatgttagatttattctctcctctttgctagctcttggtattgttacaaatcgacgaaatgattagcacttgtactgacaaaagtggcacattttgggttttgtgaattatgattataaaaggtctcggatgatgaggatgatgacaagttagatgatgctgagggcgatgcggagagcgagaagctcagcctcagccagtccattgacaatccttctgataagcctgatgcacccccttgcaagcttcgatccggtatagttggttaatcgcttttcttgctatctcaccgtgcctgttggaacacatggtttgtactgactggttgttgtattagcagagcataggaaggagaagtcccttgggctgctcactcagaattttgtcaagctcttcctcaccatggaggtaagcagcactggatttgttcctcaactgtttgattaagttggatgtcctttgtggttaattttagcggaatttgtatttgattcagattgagacgatctcacttgatgaagccgcaaagcggctccttggagagggacatgcggcgaacaatatgagaagtaattgttcacatttcctatttataattccaaactgacagtagtttttactatccaactggaactcacaatgattctgatgttcttgatacagccaaagttcggcgattgtacgatattgccaatgtgctgtcttctttgaatcttattgagaaggtataccctcaaaccgcattcgatttcagttgaacctaagtgattttttcttaacttggtatcttctgctgcttctttcagacacaacaggcggactcaagaaaacctgcattccggtggctgggccaggcaaaacggaatgaaggcgtcacggttgctttacccccaaccaagacgttgcctaacaagagagcatttggtactgatctgactaacattgacaataagaggggtaagttggactccacaatggagaacagaggcaagcccacgcaggatggtggcaacctattcaataatttgcagaggcaattagggcaagagaacaggagcgattttgtttatggccccttccaccctgctgttgcaaggaaacaagaacatggtaatcgcacagtacaagagaaggagaggaagagcattcaagactgggagaaccttgcttcttctttccgtccgcaatatcaaaatccaggtgagctccaactctctctatatatctatatcgccaaacgaatgctgtttcaagaacccattttgcattagctattagtccatctgtctagctagcatttttggttgctctctacataccatgtgatatgtcagtgctacacaaacgtcaagaagcaaatgaaacctggaaattactgagtgctcgtggattgttgtgaacaattgaagggcttcttaggttcatacatgtgtcatcagttacaagtttaaccccttcaacccttagttgatatacacttgtagggtagagctcctttacctgtgccttgcgcatctgctttactcaacacatcgtttcctctagttcacttgtttgccagcatacattctgtatttgaattccttgaaatcaaatcaaaacatcaaagactggtggatagaagaccatgtaccgacgtttaatagtagttctgaacattttgtatatggcatgttgataagtttagtatcattcggtcttctcaagtagttcaccttctgctagtgatctatcttctattatctatctatctatctattatatactaaaagtccattaaacttcctacaaacgctctcaagccgccacgtggcgttcctacaaacactcctaaaccgccacgtggcaatgtctaatcgcaccgtcgattttcacttaaatcggtggacccgataatttagaccattagattagattagatgtattttatttaataaaaggaaatgaataccatactgttggccggaaaaaaaacaaaagcataattactccttaaatacgtacgactacaaaaacaatcaagcttacataatgttcatcgaagaaaaaaaagacctacgcacagacttacttaaaaaaaaagccaaaagcaacataagtacatagtaccattgaaaaaatataaaaacaacaaagccaaaaaaaatatacgtacgtaataccattgaaaaaaaaaattgatgacctttaaaatataattttctattatttaaagataaaatatatcactctataaatttaagcaaatattatagttaattttcacttaaattagtgaacccaatagtttagaccgttagattagatgtattttattaaactaataccttattactctgtgtatgggagaattatataactattggctagaaaaagacaaaagaaaaaacataagtagcctttctacaaatgctactaaatcgacatgtggcatcctataaacgctcctaagccgccacgtggcactctaatagttaaagatttttttttaaaaaagcaaaacatctaaccgttaattttcattaaatttggtggacccattatttgtaacctttagatttatctataaaaaaaatctccttctaatatctgggcccacctgggcctgttggcatgtacgtacctacatagtacctacatacgtatgtttcttacgtctactccccctccctcttttttacctatttcttttcctactttcacgcttttagaaaagcaaaaattctatgttaaacaattaagcaaatgtaacatctaaatcataaaactaatatttgatctgcttatgtcttttgattattttacatttaaaaactcatatccactttaattcaattttgagaagaaatatgtaacattaattaggggtacatcttctgacttttgcatgccacttaagaaattatacaattataaaaaataatgatatatattttatcatcgtacaaaacttcataaaaaataatagatataatataagtaaaatgaacataactttgggtaatattaaaaagaattagacccccattctaacacaacaaaaagtcaaaataacagttagattattagatttgtagtgtgctccttacaaaaaaaattatttgcagtgttcatattttaatatcaactatgaatatattgtaggtacagacgagtaaaaaagattgattttaatcaatcattaaagcttttgttttatttttagttaataaagtaatagcagctaaaacactataactgataataattattataattatatgcatacatactctctccccttcgactatctcttcctctctcccattcaattatttggtcttctaaattttaactgattaatcaaaatgattaataattagaaaactaaataattaaattttttaagttatatctaacccacttttagtttacttgaatttgtttttttataattaaatatataattcaagatctgtattacccatattttatgctattaaaataaaagtttgtcattttaacatatacccctatcctttacaagtacctaaatagaaaaaatatcagaacattataaaatataataataagtattatataaccttaaatcattgtatatcctctgcaatgcacttaagatgtcatgtgttacatcttaaataaaaataaaaactagaaattataggaaaaaaacatctgactatcagttttcacttaaataggtggatccattattttaaaacaattgatatacttttagaacaatcctatccctccatgtgttagtcggatattagaaattatgagaaaaaaatggatcatcggtttcacttcaattattttaaaaaggaaaaagtatgaattacaccaccgaactatcgcgatcgaccaaattaaacccctaaacccaaaaaccaaacatcactcaccctgacctttcaatactttacaaattaccccctcgacccaatccagagcaattttgtcctacatggcgtacgcatgacaatccagtcaatattttctttttttaatggtgggcccaccagtcatatatactttctcacctcctctttcccctcgtcccccctctctctccatctctctcggtgcacatggcggcgcgtggcgcgcggtcggtcggcggcaacgcacggcccatgtttaagtgcttagatgttaatgaccttccatctatgctatatcatggcattacgagtttctcaatatattattacatatataaaacacatagttggataaaaacttatatatgctactattaactttaaatttaggactcatgttgactaggtatttttttagaaaaaacactgtagatcacatatagtaatagggaagcgagctgtacaatatgtatatctcctacatacttattgacacggttttttttctagaaaatgaagaattagtgataatcgcttatagtaataaagtaaatattatatagttcaaaccttacaaatatcatgtaaaaaaattatatgagcaatgcagatgaagaaaatttataaagaaattgtactttttcaagtacgaaatgtgtctcgatatccatcttacaagttagtcaaacctatcctactttgcatgcctgcgcaatgcgcgggctatcttcctagttctattaaatgtactgttaaagagaaggttctgttgtaacaaacttaacataatttcttccattttctaatgcaggactgaacgatctttttggccactacatggaagcatggaggtcatggtactcggatctcaggcgagacagagcatcataaaaccagattcaggccggtccgttgtaaacaaaattcttgtaggcagataaactcatttgttgatgcatggttagggatttttgagttatacaagatgtcacaaaaacaaaggctagtgctggcctttgattgattgtatttactcagtgcaagaaattggaaagtcgtttcgtcaataatactaggatacctgattgtcgatttgttt</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0245900, RefSeq:Os06g0245900