Os06g0270900

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Revision as of 09:13, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0270900| Description = Similar to RF2 (EC 1.2.1.3) (T cytoplasm male sterility restorer factor 2)| Version = NM_001063893.1 GI:115467517 Gen...")
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Gene Name

Os06g0270900

Description

Similar to RF2 (EC 1.2.1.3) (T cytoplasm male sterility restorer factor 2)

Version

NM_001063893.1 GI:115467517 GeneID:4340725

Length

5447 bp

Definition

Oryza sativa Japonica Group Os06g0270900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:9090027..9095473

Sequence Coding Region

9090243..9090351,9091954..9092091,9092309..9092451,9092546..9092699,9092794..9093023
,9093566..9093655,9093790..9093963,9094057..9094194,9094396..9094533
,9094634..9094695,9094928..9095201

Expression

GEO Profiles:Os06g0270900

Genome Context

<gbrowseImage1> name=NC_008399:9090027..9095473 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:9090027..9095473 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctgccgctgctgcaaggaggggctcatcgctgctctctcgctgcctgctgtccaggcccgccgccgccgcctcgcctgctgtcccctctgcgctccgcagggcagatgggacacaaggattgttgccgggaatccttcagaggttcagcactgcagcagtagcagaggagcccatatcacccccagtccaagtgaactacactcagctcctcattgatggaaaattcgttgattcagcatctggcaaaactttcccaactctggaccctcgtaccggggagctgattgcccatgtggctgaaggcgatgcggaggatattaaccgtgcggttcatgcggcccgcaaggctttcgatgaagggccatggccaaagatgactgcctatgagagatcccggattctgttgcggtttgctgacttgattgagaagcacaacgatgaaattgctgcattggagacatgggacaacggcaagccgtatgcgcaagctgccaacattgaagtgccaatggtggcacggctgatgcggtactatgctggttgggctgacaagatccatgggcttgtcgtgccggctgacggcccacaccatgtacaggtgctgcacgagcccattggtgtcgcaggtcagatcatcccatggaactttccgcttctgatgtttgcgtggaaagttggccctgctttggcttgtggaaacactgttgtgctcaagacggctgagcaaactcctctgtctgctctatttgcttctaagctgttgcatgaggctggactcccagacggtgttgttaacgtggtatctggttttggacctactgctggtgctgctcttgctagtcacatggatgtcgataagattgcattcactggatcgaccgatactggaaaagtcgtccttgagttggctgcaaggagcaaccttaagtcagtgacactggagctaggaggcaagtctcctttcatcatcatggatgatgctgatgttgaccatgctgttgagcttgcgcattttgcactgttctttaaccagggacaatgttgctgtgctgggtctcgtacatttgtgcatgagcgtatctatgatgagttcgtggagaaggccaaggctcgtgctctcaagcgtgtggttggtgatccattcaagaatggtgttgaacagggccctcagattgatgacgagcaattcaacaagatcttgcgctacatcaagtatggtgttgacagtggagccaaccttgtgactggtggcgacagattaggtgacaaaggttactacatccagccaacaattttctcggatgtacaggataacatgaggattgctcaagaagagatatttggccctgtgcagtccattctgaagttcaatgatctgaacgaggtcatcaagagggcaaatgcaagccagtacgggctggctgctggggtcttcaccaacaacctgaacacggccaacaccctgacccgcgcgctcagggtcgggaccgtgtgggtgaactgcttcgacgtcttcgacgccgcgatcccgttcggcggatacaagcagagcggcatcgggagggagaagggcatcgacagcctgaagaactacctgcaggtcaaggccgtcgtcacgccgatcaagaacgccgcgtggttgtaa</cdnaseq>

Protein Sequence

<aaseq>MAAAAARRGSSLLSRCLLSRPAAAASPAVPSALRRADGTQGLLP GILQRFSTAAVAEEPISPPVQVNYTQLLIDGKFVDSASGKTFPTLDPRTGELIAHVAE GDAEDINRAVHAARKAFDEGPWPKMTAYERSRILLRFADLIEKHNDEIAALETWDNGK PYAQAANIEVPMVARLMRYYAGWADKIHGLVVPADGPHHVQVLHEPIGVAGQIIPWNF PLLMFAWKVGPALACGNTVVLKTAEQTPLSALFASKLLHEAGLPDGVVNVVSGFGPTA GAALASHMDVDKIAFTGSTDTGKVVLELAARSNLKSVTLELGGKSPFIIMDDADVDHA VELAHFALFFNQGQCCCAGSRTFVHERIYDEFVEKAKARALKRVVGDPFKNGVEQGPQ IDDEQFNKILRYIKYGVDSGANLVTGGDRLGDKGYYIQPTIFSDVQDNMRIAQEEIFG PVQSILKFNDLNEVIKRANASQYGLAAGVFTNNLNTANTLTRALRVGTVWVNCFDVFD AAIPFGGYKQSGIGREKGIDSLKNYLQVKAVVTPIKNAAWL</aaseq>

Gene Sequence

<dnaseqindica>217..325#1928..2065#2283..2425#2520..2673#2768..2997#3540..3629#3764..3937#4031..4168#4370..4507#4608..4669#4902..5175#gggtaaagccctggctttcctcccccaacaactcggccaaattcaaagcaaagccgccattactgctcctcttccattccactggggacgtacgagctccgcgcatcccttccattccattactgaccttggctgctgcggctgcagtgcagagggggtttggtggtgcggttgatttgagcaataaattctctaggggggagggaggtatcggtcatggctgccgctgctgcaaggaggggctcatcgctgctctctcgctgcctgctgtccaggcccgccgccgccgcctcgcctgctgtcccctctgcgctccgcagggcaggtatattgattgattcatcatcccctggaccccttgttaattccaccgtacttttttttggttgtacagaatcttggttggtactagaagtaggtattcgtggccaagttcatgtgttctaggaaaaaaataaaaaaagttcatgtgttatttgtgtttcttggtgggtaaaattattttttccccaatgttgttggggggtgtcttggaattatttttcccacctttggttgatgccacaccgttgtagggcggcttctgtttgtctctttttgggtggtggtggggttttggatcttggagggattggccggacctgactgatctgaattccagggttggtgtgttgttgtcactagtgccactgtttaattattggttcatgacagggcttaattattgggtgcttaaaaacattatctcttgctgtatgggtgactgctctgatggcaagattcaatttggtactagaactcaaccatgtttgtatgaaaaaaaaatggtattgttgtagtagcttgtaatgattcttgaatttgctttttcacccagaaattcagcctctagagttgatcttttagatcaggttgtgtcctcatcttttgggaaaatatccttcattcaacgttgctgtcctccactactttctgtgtagtatacctatttgtcagctaatctggttgtagtgagaaatccctgccttatcttgacccggaaaatatggggtttctaggatttttggcgtcagatatgagtcatgagcatgagcggcagattggacctttcctcttttcttcggtgggctgtgatattttctttccttgacatgataggataccagtttttcttcagtccttatcagtgccatagaaaatcttaggtttttggttccaaaccgttcttgtttgctaatgtcaccatatatacagcgaaaccgatgtgaattgcctcgactatgaaatgacaagcagataccataaaaattcaaaacactattctttatctgaaattactgattagtactagtttactagttgccgggcagcacagtaacactcctggacattattgagtggtcattcagtcaaaaagaaagggacaagttgtaatcggctttcttatctgcgctacactgaggcacaattttaaactcttatttttcccatcatccttcaggccggtcaagatataaactagtttgtacctataagaaacatgaaataaatttagttccctagaattacagacagacggggtaaacacatgtaggacagtattggcgatgtattatacttttcagtcctgtgtgcttgtttttcaggttattttcctggggacaaatttatcacttacgcaaattttttcttgaaacgccagttttgaaaaataatgtttaagtatgtttaaatgctcctttcttccaccatgtgtggaggcatttgatctagggaccatatattatttttgtaccatttttgaggggcatttactgtcccattcagacttcattgaatacatgatcttaggaaatggatttactccgtaccactgctactactgtagtactcgtactattcctgactatgcattttctgcttgcagatgggacacaaggattgttgccgggaatccttcagaggttcagcactgcagcagtagcagaggagcccatatcacccccagtccaagtgaactacactcagctcctcattgatggaaaattcgttgattcagcatctggtacacttcttcagctcagcccttcctatgaaactatttcaactcaactagtagtaatgagattggattcataaggctagtttggtgggcttcagctgttctataggcattgaacaccacaaggcccatgaactgagaaaaatagattggttttaaatttctttttgtgacagtaagttgagctcataattcaaattgtgcattgcaatttcattaggcaaaactttcccaactctggaccctcgtaccggggagctgattgcccatgtggctgaaggcgatgcggaggatattaaccgtgcggttcatgcggcccgcaaggctttcgatgaagggccatggccaaagatgactgcctatgtaaacacttactgacacttctgttgctagctgctactgttgtattgttctgaagtcatgctcatagaagtacacaatttattttcttctacaggagagatcccggattctgttgcggtttgctgacttgattgagaagcacaacgatgaaattgctgcattggagacatgggacaacggcaagccgtatgcgcaagctgccaacattgaagtgccaatggtggcacggctgatgcggtactatgctggtgagtaagcttccttctgacatcaacagcaatgatcaacaaggtgcctatgcaggtggctaatattgttccactcgtgctgaaatgtttgcaggttgggctgacaagatccatgggcttgtcgtgccggctgacggcccacaccatgtacaggtgctgcacgagcccattggtgtcgcaggtcagatcatcccatggaactttccgcttctgatgtttgcgtggaaagttggccctgctttggcttgtggaaacactgttgtgctcaagacggctgagcaaactcctctgtctgctctatttgcttctaagctgttgcatgaggttggtgcagtgatcattttcgtaatttttgttcaatgagaggaatccatttttaattgctccatgctatttggacatttattatgattactgagaatggcctgttgttggcttgtgtagttttgggattgcaaaatattataattagttctaaagcaaccattttgcaaaatatggttactgagaattgcattttacagaatttcttgtcctgcagtctagtgatcaagaagcaactgcaagttcagatcttcccgaaaggaagggatagaaacaacccattctagtgtcaataatccttttaggtctaatatccaagacctagagtgaaatgattcaaatttcattgcatgatctgtttgtttagttctttgtcaatgcagccatcaattctggcttgcttcagtgcaaagaaagagtgcatttttgactaagtctgaccagctgaagcattctttatattttctagtctacagtgaacaatgttctatatcagctacacattattgaatcagaattgatcatcttaaatgattaaataggctggactcccagacggtgttgttaacgtggtatctggttttggacctactgctggtgctgctcttgctagtcacatggatgtcgataaggtaaacttgtggttttcttgtaattcctgtattttacagataatggccagaaaacagtgcaatatttagatttatagtattaaaatatttaaattcagttgcattctaagattttactttcactttcaatatagattgcattcactggatcgaccgatactggaaaagtcgtccttgagttggctgcaaggagcaaccttaagtcagtgacactggagctaggaggcaagtctcctttcatcatcatggatgatgctgatgttgaccatgctgttgagcttgcgcattttgcactgttctttaaccaggtaccacatgataaattatgtcaaagcaggcacaacaactttgttcattagtttgaaatctctaaatgatttttcttgacttaaaatttcaagggacaatgttgctgtgctgggtctcgtacatttgtgcatgagcgtatctatgatgagttcgtggagaaggccaaggctcgtgctctcaagcgtgtggttggtgatccattcaagaatggtgttgaacagggccctcaggtacatagtactgactagcacattcagccttcatactgcctgtccttcagttatccatcacatggccatgcattgatgtggtataatcatgcaggctttacattaattaccttcaatcgtattgtcaagtatccagtcatcataacacattcaggttttggactgatgataaccttgcaaattttgttttaatacttctagattgatgacgagcaattcaacaagatcttgcgctacatcaagtatggtgttgacagtggagccaaccttgtgactggtggcgacagattaggtgacaaaggttactacatccagccaacaattttctcggatgtacaggtaattaagcttaggataacgtcaaagaatgtcagcacagattgtccttctcctttgttgcctcatcttcttaacacttattgtatggtgattgcttcaggataacatgaggattgctcaagaagagatatttggccctgtgcagtccattctgaagttcaagtgagtaaacactccatttcacatgcatcctgtcccaaactcttagcagtaaccaaattaatcaagaactgaaccgaagactatatatattttttaagataaaggaagcttttattgatctcagacaattacatcaagttgatacaaccatactaagaacatttctggcctctacataactaggatgcacataactgacaaaaccataacgcaatttatgctatgtcgacagtgatctgaacgaggtcatcaagagggcaaatgcaagccagtacgggctggctgctggggtcttcaccaacaacctgaacacggccaacaccctgacccgcgcgctcagggtcgggaccgtgtgggtgaactgcttcgacgtcttcgacgccgcgatcccgttcggcggatacaagcagagcggcatcgggagggagaagggcatcgacagcctgaagaactacctgcaggtcaaggccgtcgtcacgccgatcaagaacgccgcgtggttgtaaacacatagatgtttggacatttcagaactggggaagaaataggtataatcttatggacggatgcgaaaatggcgataaattatggcgataagattatgatgatgatgatgaagaagaagaagaggaggaggaagaacagctgaaataagcttgtcctagcatggggctggcattgtctctaataaaccttgtggttggtgctcatgttactgatggagtatattgtagaagcagatttatgttcattatgaaatatatatcgcttgtttggg</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0270900, RefSeq:Os06g0270900