Os06g0275900

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Revision as of 09:14, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0275900| Description = SMAD/FHA domain containing protein| Version = NM_001063918.1 GI:115467567 GeneID:4340752| Length = 7445 bp| Definit...")
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Gene Name

Os06g0275900

Description

SMAD/FHA domain containing protein

Version

NM_001063918.1 GI:115467567 GeneID:4340752

Length

7445 bp

Definition

Oryza sativa Japonica Group Os06g0275900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:9399937..9407381

Sequence Coding Region

9400081..9400562,9400733..9400818,9401601..9401680,9402010..9402065,9402222..9402270
,9402876..9403025,9403177..9403272,9403626..9403739,9403839..9403969
,9404355..9404587,9406139..9406906,9406981..9407030

Expression

GEO Profiles:Os06g0275900

Genome Context

<gbrowseImage1> name=NC_008399:9399937..9407381 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:9399937..9407381 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacccctccatgcctccgcctccacctcgaaaccctaacccctcctccgcctccatgccgccccccccgccaccgcccaagttggagccggcgtccaagcccgaatccactaaccctaactcctccatgccgccgcctccgcctccactcccggtggagggtgcgagcactagctcctctatgcctccgcctccgccgccacggcccgcggcgccgccgcagccggaggtggagggggcggacgcgtcggccgaagggggcactagcgctagcgattccgaggcggatgaggcggcggggaacttaggtaggggctccagggatattgagatggcggaggcggcggcgccgccgccatcacagcagcagcagccgaggccgcgtgccccgtacgccatacccgagtggagcgccgcaccgggccaccccttcttcctcgaggttctcaaggacggcaccatcgttgacaagcttgacgtgtccaggaaaggagcttacatgtttggtcgaattgatctttgcgattttgtattggagcatcccactatttctcgctttcatgctgttttgcagtttagaaatgatggggaggttttcctttatgatcttggaagcacacatgggtccttcatcaataaaactcaggtcaagaagaagatatatgtggaaattcatgttggagatgtaattcgatttgggcaatcatcacgtttgtacatattccaaggaccatctgagctgatgccccctgaaaaagatatgcagaagcttcgggatgctagagttcagcaagatatgcttgatcgtgaagcttcccttttacgtgcaaaaaatcaagcagctttagcagagggtatctcatggggtatgtctgaggatgcagtcgaagattctgcagaggatgaagctgatgagatcacatggcaaacctacaaaggtcaactcactgatagacaggagaaaacacgaagcaaaataataaagcgattggaaaagattaccaacatgaagaaagaaattgatgcaataagagctaaggacatttctcaaggtgggttaacccaaggtcaacaaacacagattgcacggaatgagcaaaggacatctcagcttatggaggagctggaaaatttagaagaaactttgaatgacagtatacgggaaagtcttggtgctcgcactggaaactcaaatcgtggtagtcataaagcaagtcttgaggaagaagatgacattcttagtgacgaagatgacttctatgatcggacgaagaagaaatcttctagtcataaatccagtgagcagcaagtggagactgctgatagtcttcttgataaaaaagataccataaccagcgatattgaaagtaaaaagaaattggttgaagaagagaagaataagttggcaaaaagtgagaatgcggatgttggggacgaccttgatgcttacatgagtggattatcatctcaattagtacatgacaagattgcccaaatccagaaggagctttctgatcttcaaactgagctgggcagggtggtttacctactgaaaatagctgatcctatgggagaagcagctcgcaagagggatctcaagccacgagaaacaaaatctccagcatctaatgatagtctaagaccagagtccagaaagcaaaacaaagttgcacaaaacaaagcctcaacagaggagaagcttaaggaatcttgtgctgaaaaaacacaagtggataaaccagccgaggaagagaagggtatctccacaaaccaagaaaatggcagcaaacctgcattctccattccaaaacctcagtggcttggtgacaagaggaccgtggaatctgaagagaactgtataaaagaagaaagtgccaatgaagaggagactgataattttgtggactacaaagatcgaaaaactattctttcaggttccgccaatggaaaagaccttgaagaagctgctcctgggcttattttacggaagagaaagtctgatcaatcagcagccaatgaggtggaatcttcagttgaatccgaagcatctgctgctgatgctgtggccctcttgctgaagcacaaacgtggtttacaaacttctgaagatatggaggatgagaatgaaccacaagctagcaagagaaaaagtaaaaagtcgaaacaaaaacgcgtactgggtccagcaagaccagattttctggacgcaggtccagatcatgaaacatgggtgccacctgaaggtcaaactggtgatggccgcacttcattgaacgatcgtctgggctactga</cdnaseq>

Protein Sequence

<aaseq>MDPSMPPPPPRNPNPSSASMPPPPPPPKLEPASKPESTNPNSSM PPPPPPLPVEGASTSSSMPPPPPPRPAAPPQPEVEGADASAEGGTSASDSEADEAAGN LGRGSRDIEMAEAAAPPPSQQQQPRPRAPYAIPEWSAAPGHPFFLEVLKDGTIVDKLD VSRKGAYMFGRIDLCDFVLEHPTISRFHAVLQFRNDGEVFLYDLGSTHGSFINKTQVK KKIYVEIHVGDVIRFGQSSRLYIFQGPSELMPPEKDMQKLRDARVQQDMLDREASLLR AKNQAALAEGISWGMSEDAVEDSAEDEADEITWQTYKGQLTDRQEKTRSKIIKRLEKI TNMKKEIDAIRAKDISQGGLTQGQQTQIARNEQRTSQLMEELENLEETLNDSIRESLG ARTGNSNRGSHKASLEEEDDILSDEDDFYDRTKKKSSSHKSSEQQVETADSLLDKKDT ITSDIESKKKLVEEEKNKLAKSENADVGDDLDAYMSGLSSQLVHDKIAQIQKELSDLQ TELGRVVYLLKIADPMGEAARKRDLKPRETKSPASNDSLRPESRKQNKVAQNKASTEE KLKESCAEKTQVDKPAEEEKGISTNQENGSKPAFSIPKPQWLGDKRTVESEENCIKEE SANEEETDNFVDYKDRKTILSGSANGKDLEEAAPGLILRKRKSDQSAANEVESSVESE ASAADAVALLLKHKRGLQTSEDMEDENEPQASKRKSKKSKQKRVLGPARPDFLDAGPD HETWVPPEGQTGDGRTSLNDRLGY</aaseq>

Gene Sequence

<dnaseqindica>145..626#797..882#1665..1744#2074..2129#2286..2334#2940..3089#3241..3336#3690..3803#3903..4033#4419..4651#6203..6970#7045..7094#tctcgccgccttcttcccccttgtcgccgtcgccgagccgcctccgcctcaccgtgccgaccaccacctctcccaacctcgccgtcgaatcctctctctctctctcgtctccccgcttcgcttccacctcgcactcacactcccatggacccctccatgcctccgcctccacctcgaaaccctaacccctcctccgcctccatgccgccccccccgccaccgcccaagttggagccggcgtccaagcccgaatccactaaccctaactcctccatgccgccgcctccgcctccactcccggtggagggtgcgagcactagctcctctatgcctccgcctccgccgccacggcccgcggcgccgccgcagccggaggtggagggggcggacgcgtcggccgaagggggcactagcgctagcgattccgaggcggatgaggcggcggggaacttaggtaggggctccagggatattgagatggcggaggcggcggcgccgccgccatcacagcagcagcagccgaggccgcgtgccccgtacgccatacccgagtggagcgccgcaccgggccaccccttcttcctcgaggttctcaaggacggcaccatcgttgacaagcttgacgtgtcagttgctgtctctcttcacccttagcatgattgtctattgtctatagaacaattgccactacctctttgctcgtagcctcatattttggttagcgctcggggttatggattgaaaatggcatgaatgtgtctgcttttatattcatgtttggtgttacatgtgacaggtccaggaaaggagcttacatgtttggtcgaattgatctttgcgattttgtattggagcatcccactatttctcgctttcatgctggtatgttactatgctttcatcattgtcttttcaattatgacataggtaaaactgtagaagaatcaagattcaaaatcctggtgtttaacttagtggctagcttgcatgttccgaatggttttgcattcttaaaaattgtcttgtccttgaggggttttgttgctgatgttagaaaaggaaaatggcattcagtctcaggaatagctttttgcatcatctttttaccaattgatcatatatgaaatgttgacaaactggtaaccagcctgtccttgttcttttcacattgaggagaacaaagcataattgctattcatgatgctgtgatttccgtgaacatatatgaaatagcattgcatgaggaaccgatgaaacttacccagtaaatttggcttgaaaggttaaactttcacttcaaactctacaacttgtgaataccttcagccctaaatagcagaaaaaaaacacaacaaaattcaagaatttgagagaccaggttatgagattttcttgtgcagagctctattatttttaacttacaaaaacattttatttcaagtgtttatgtatgagcacttgttgcctttcttgggaggtatccgtctttaatattcgaataatctctcaactccagtgtcactatcatagtggacattatttgctagctagagaaggaaatgaatggattaggtaaaattggtactattagtttgtaatatagaatattttcttgtttagtgcttaaagcaagacattcatgaactgcttttatgctattttagttttgcagtttagaaatgatggggaggttttcctttatgatcttggaagcacacatgggtccttcatcaataaaactcaggtaatagtcttctgtcatatatcttacttcagagaaagcttcccccttatcaaagctcaacatatctttataccttaaagctttataagcttttgtcatgagtgcattctgtcgttgctcgtgctcttttatttaaaaagcagtgatttatgtcagtagtttcttatcctgttgcgttttagttccatcatttatctcaaccttattgtatcgcattgtaaattttaagaagtcacctgccacattaattatttatatggaacattgcagtaatatttacaatttgttgttcatattatattctctgatgttatttgtgaaaatactaggtcaagaagaagatatatgtggaaattcatgttggagatgtaattcgatttgggcagtaagtgatcttgttaattaattgtttaatttttttgttgcctaattctatggaacttactggcccttctttccttaaatgtttctattttttttattgagttggtgctgttgttacttagtacaattggactaatcttctcgtcgtatttgccagatcatcacgtttgtacatattccaaggaccatctgagctgatgccccctgtaagattcatctgttctttcatattttcgttaccttatttggatcgttcaaccatccacaattttgtcagtgttattgatgatgtagtatgctgtttattcttatcaaattctgcttttggatgtcatattgaaatgaagatttttttctaccagttaggcatgttcgatttcttggcagtgatcttgtaatactttctgaagtagtgccaattgagtgtggctagtaaaatcatagcatgctatatcagatctgtgcttatgttggatttctttggagctctgtttctttttgagaggttcctttatgcaatgggtcacacctataaaagcttctaaaatacttatttttttccagaaatagttctcagagaaattcatttcaatacgaagatatattatcatgtaacaagcaaacatacatgaagttgaactagttattcttcattctaacttcactttgataattttaactgttaaaaacctcataatttgatcatgttctttgttattacgagggacattttcacatccagtgaatagtccagtgaatcaaattaacctatcctgttgtttaaagttgcttgaatttacgtatttggcaggaaaaagatatgcagaagcttcgggatgctagagttcagcaagatatgcttgatcgtgaagcttcccttttacgtgcaaaaaatcaagcagctttagcagagggtatctcatggggtatgtctgaggatgcagtcgaagattctgcagaggttagttgtttttgcaagaattatattttgtatattgataaatttacataaatatttgtgatgcgtgtaatcacgtaaactgtgttttattgaaatttccaaagttcatatttatatttcagcattacatcatttgttgcatttatattaggatgaagctgatgagatcacatggcaaacctacaaaggtcaactcactgatagacaggagaaaacacgaagcaaaataataaagcgattggaaaaggtaaacattacttgtgctgactactgagatttgatctctatgcaatgttctttgtgacttagcttaaccaactttcttgtggatttataacttcattttatctggaaaactattatttgtgaatctgaaatgtgtgcttcttgttacatggactgtcaattctgatttctattgttctttaaaaagtaacttcaacaagtactgaagaccattgattaataatatctggatgctggaaatcggggatatgttgttgaaatttggggggtggtctagactttttccttcccatggatgcatatggtttgcacctctgcttgtcttacaagtttatctttctgtctttgtttcagattaccaacatgaagaaagaaattgatgcaataagagctaaggacatttctcaaggtgggttaacccaaggtcaacaaacacagattgcacggaatgagcaaaggacatctcaggttagtggatcaaatgcttcataccttcttgcactaccttttcatatcatattaccagtccaccaccaacgggtatcataacaaaccttttttcctcagcttatggaggagctggaaaatttagaagaaactttgaatgacagtatacgggaaagtcttggtgctcgcactggaaactcaaatcgtggtagtcataaagcaagtcttgaggaagaagatgacattcttaggtttgtcttctaataaattttgcctagcctgttatgcattttttgtttacgatatttgttggttgttatttgaaatgatattccttttcttttaatttaaatctagttagatatgaactgcactgctgaatttggttgatcaagcttggctactaaatttcctttagatagttactgcaaactagaacacggataaatgtactaggaacttctaccttgcaacctattatcaaattatttatattttatccaattgcataagttttgtcctgtctgctggtagacgcttatatagctgtacattgttcataagtatgatttaagaaatttatctttatatatgctcattgtcgtgtactgattaatggattctcaaataatttagtgacgaagatgacttctatgatcggacgaagaagaaatcttctagtcataaatccagtgagcagcaagtggagactgctgatagtcttcttgataaaaaagataccataaccagcgatattgaaagtaaaaagaaattggttgaagaagagaagaataagttggcaaaaagtgagaatgcggatgttggggacgaccttgatgcttacatgagtggattatcatctcaattaggtatggtgctgtagtgcctacaaggtttatcatctcagaattttgacatgcttcaattttccttaagagttccggtcaaaaaattttccttaagagtgtagtctatggtatcatgtcactaagaatctgttgctgcctgttcacctcggtgtttattgttgagtcattgaaatttgttgagtggtagttttgtatgtagttctttccatggtctgtaattgcatctggggaagtagtggtgaatgaaaataaggtaaatgagcttcatatagttctggtttgaaagttcccgtgatctcttttggaaacttgacttgctatttggtaacgacactggcctcaaagcaacatttgcaactgaaatgactcgacctctctgtacgatttgataatcatcaactctattttgggacaatcaagttcatctgagtacagttgcaattacccttcagcaatatgtcttgtcattttctctactactaaaaagaggagttgatggtggttgtttgcctatgcatcctcagtttagatcatttgtattgtagtatccattttctaaaaaatcccattatttacacgtgtatttagttgcctgttgttttgataaagttatacttgtatgtaatatgggtgcaatcaattagattagagataactattttttttacttcatatttgtggtgtgtttgtttttagatttggcataatgcacaggtactgtctagaacaattttaatgtagttgttaatcatttggtttggtctaaaaaacatggtcacattaatatggatattttagcttgtttgcgttgaggaactatgatcaatgttatttcccagcaatacttttagcttctgtgatagtgggaactatgaaatatttcccttttctttgttttcttctttacttattcttgcattgtacttggcattagttgataacttaatataaaccacgaatccatgcaacacttgaagttcatggtatgcaacaatttccttctaattatatttgtagtgctattttctgaacatattgatagatgtgtgagtagatatcctacagcactgatgcatggaagagattctttactctgattggacgttggagcagaggatacatatgctccattattaattttcccttgtataatacttccaacactcaaattattacaaaaatgacatgagtaaagttactaccaatatgctttcatagtagtattacatatctgaatatatagtaataaatattggtcattaataaagtggtgatattgttgactttgaagtgtagggtagagcattcaatgaccgcaagctaagttactaaagtatacgtcattgaaatatgactttcatttacagaacaatctgatattgcatcagtttttgtaatatttactttgtttaacccctgattagttttagacttcactcatggaaaaacaaagcttgaaaatgatgcatgtctgtatgcttgttttccatatttatgttcagttttatgcttgccacttttcttcactcactagtttgaactgttctgcagtacatgacaagattgcccaaatccagaaggagctttctgatcttcaaactgagctgggcagggtggtttacctactgaaaatagctgatcctatgggagaagcagctcgcaagagggatctcaagccacgagaaacaaaatctccagcatctaatgatagtctaagaccagagtccagaaagcaaaacaaagttgcacaaaacaaagcctcaacagaggagaagcttaaggaatcttgtgctgaaaaaacacaagtggataaaccagccgaggaagagaagggtatctccacaaaccaagaaaatggcagcaaacctgcattctccattccaaaacctcagtggcttggtgacaagaggaccgtggaatctgaagagaactgtataaaagaagaaagtgccaatgaagaggagactgataattttgtggactacaaagatcgaaaaactattctttcaggttccgccaatggaaaagaccttgaagaagctgctcctgggcttattttacggaagagaaagtctgatcaatcagcagccaatgaggtggaatcttcagttgaatccgaagcatctgctgctgatgctgtggccctcttgctgaagcacaaacgtggtttacaaacttctgaagatatggaggatgagaatgaaccacaagctagcaagagaaaaagtaaaaagtcgaaacaaaaacgcgtactgggtccagcaagaccagattttctggacgcaggtccagatcatgaaacatgggtgccacctgaaggtgagaatttggtactaatttctagcacactagttatccctgacaaactggtaattgctgattgtattctgcaggtcaaactggtgatggccgcacttcattgaacgatcgtctgggctactgaagttttcacattcaagactcgactcgatgcgtcatgaagaagaattcagtagcgacgatcgcggtattactgcagctagtccttgagcatgcgtttcatataacttcaaatggaaactggcccctttttattagttgctcgccatttcctgagactgtagtagaggctgtgtaagattgcgaatttgtagaaaatgagagttgaaatgacaggtggtggatctgtatgggaatggtgtcacctgtccaggggtcacaaaggatgcaaatgtcattttcagttcgctacgagaatggggtgggattttgtaatgtacatcatcgtcccatagtataacggttgtttggtgcc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0275900, RefSeq:Os06g0275900