Os06g0298400

From RiceWiki
Revision as of 09:15, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0298400| Description = WW/Rsp5/WWP domain containing protein| Version = NM_001063977.1 GI:115467685 GeneID:4340813| Length = 8367 bp| Defi...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os06g0298400

Description

WW/Rsp5/WWP domain containing protein

Version

NM_001063977.1 GI:115467685 GeneID:4340813

Length

8367 bp

Definition

Oryza sativa Japonica Group Os06g0298400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:11153837..11162203

Sequence Coding Region

11153952..11154042,11155241..11155321,11155811..11155929,11156519..11157138,11157236..11158428
,11158524..11158603,11158995..11159090,11159175..11159248,11161251..11161395
,11161922..11162005

Expression

GEO Profiles:Os06g0298400

Genome Context

<gbrowseImage1> name=NC_008399:11153837..11162203 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:11153837..11162203 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggaggaggaaggagcgccgccttgcggccaaggcggccgcgggcggccgcagggtgaagctcgacctcttcctcgatccctcccccgggggaacaccttcgaaagagggagagcgaggggaaaaccatgaccaacaaactggggttcccacttcaccatcttcttcagataagaaggagaatcctctagcgttgcttgggcaatatagtgatgatgaagaggaagaggaagcagcagatcaacccaatgatgaaacagaggctaatcctgcagatgcaggtgataagattactcatgaacgtggggacttgactaggaatgaaggtgatgcacaaagtgatctggctggttctgctaatgtccaacaagagttaactgaagctgatgataagaagtgcactggaaatattgctgaagaaaatgttgttgccataaagccaactctggaagatgggactgcaacagcaactgaagctattcctgactcatctgggatgcaaattgttggtgacattggtgggaattggaagactataatgcatgagcagagcaaccagtgttactattggaacacagttactggagaaacctcttgggagattcctaatgtattagcttctgaaattgcagctgacagtgtcacttctgcatctgctcctactcatgtagactactctatggaggcccaagcacatgcccttacccacaatgccgtggaagcttatccaagtgatatatctgtgctaaatggctcagtggcttatgctactttgggaatgggacagcctactcatgatgcttatgcttatgctggagctgtcactagtcatgaatcgatggacattgatcctttgcagcttgcaagatatggcgaggaattgctgcaaagattgaagccgctagaaaggttgcatggttccatttacaatgttgaattgctaaaaagagaaattgagatacgaatatcagactgcaatgcactttcatcgtatggatcttctttgcttccattgtggttgcatgctgaggtacaccttaagcaactagaattctcagtttccaaattggaaactagttactctaccactgaacctagacatccagagaaagcagacacagaacacaaaacacctaatgaagctgaagtgatgatgccaccctccaatggtgagggtttgaaatctgaggtgagcactgacgttatgatggatggaaatgttaaaaatgaggagccattttcaacatcatccattcagaaatcagaagaaaatgataccacaacagtcccatcaaaaattgaatccgacaatgatgaagatatggatgtggatatggaggttgacgatgacaatgttgaagagcataagcactcgaattccacgcctattaaggaatatcctccatcagagcaagttcagtcaccggctttgttattgttggacggttcagctgcacccctagaggatagcgacattcctccaccaccaccagaagatgaatggattccacctccaccacctgagaatgaaccagctcctccacctcctcctgaagaacctgctgtgtcatctgtttctactgaaacaattccacagtcctatgtcgatcaagcaaacttggtctatacagttcctggaatggagtactatgctgctgcaggtacagaaggtacacatgccagctattatatgcaaacgagtgagcctcatgtcgttcaagcacaccagaatggttactatgcaccagtatctgcaagtggcatatctattcctgttgatgccacatctattgctccagtacctgtttcttactatagctatccttcagtcactatggctgccactggagaagcagctgagccttctggatactacgcggcatcagtctctgccacttctagcagtgtattagataacacaacaagctcttccaatcttgctcctgcgaatagtagtttgcattccagggagtctgacaacatcatatccaaggaggcaaaacttgcatctttgagccaacctgtgggagcaacatcagcatcagcatccatacagggaagttctgcacaggcttctacaagtaccacaagtcagagcaaagttgttcgtagcaagaagcgagctgtttctgttgcaacatcactgaggtctaataagaaggtttcaagtctggtggataagtggaaagctgctaaggaggagcttcgtgatgaggaggatgaagagccagaaagtgctttggacgcattagaaagaaagcgtcaaaaggatattgatgagtggcgcaagcaacagatagccagcggagaagctcaggaaaatgccaattttgttccccttggtggtgactggcgtgatcgtgtgaaacgcaggagagcggaagcaaaaaaggaggcaaatagcgagactatttctgcaccagtgagtgtcaccgatctgcataaaggacaacctgatcttgcagagctctgcaagggtcttccttctggatggcaggcatacctggatgaatctacaaagcaggtgtactacgggaacagcctcacatcagagacgacatgggatcggcctaccaagtga</cdnaseq>

Protein Sequence

<aaseq>MGRRKERRLAAKAAAGGRRVKLDLFLDPSPGGTPSKEGERGENH DQQTGVPTSPSSSDKKENPLALLGQYSDDEEEEEAADQPNDETEANPADAGDKITHER GDLTRNEGDAQSDLAGSANVQQELTEADDKKCTGNIAEENVVAIKPTLEDGTATATEA IPDSSGMQIVGDIGGNWKTIMHEQSNQCYYWNTVTGETSWEIPNVLASEIAADSVTSA SAPTHVDYSMEAQAHALTHNAVEAYPSDISVLNGSVAYATLGMGQPTHDAYAYAGAVT SHESMDIDPLQLARYGEELLQRLKPLERLHGSIYNVELLKREIEIRISDCNALSSYGS SLLPLWLHAEVHLKQLEFSVSKLETSYSTTEPRHPEKADTEHKTPNEAEVMMPPSNGE GLKSEVSTDVMMDGNVKNEEPFSTSSIQKSEENDTTTVPSKIESDNDEDMDVDMEVDD DNVEEHKHSNSTPIKEYPPSEQVQSPALLLLDGSAAPLEDSDIPPPPPEDEWIPPPPP ENEPAPPPPPEEPAVSSVSTETIPQSYVDQANLVYTVPGMEYYAAAGTEGTHASYYMQ TSEPHVVQAHQNGYYAPVSASGISIPVDATSIAPVPVSYYSYPSVTMAATGEAAEPSG YYAASVSATSSSVLDNTTSSSNLAPANSSLHSRESDNIISKEAKLASLSQPVGATSAS ASIQGSSAQASTSTTSQSKVVRSKKRAVSVATSLRSNKKVSSLVDKWKAAKEELRDEE DEEPESALDALERKRQKDIDEWRKQQIASGEAQENANFVPLGGDWRDRVKRRRAEAKK EANSETISAPVSVTDLHKGQPDLAELCKGLPSGWQAYLDESTKQVYYGNSLTSETTWD RPTK</aaseq>

Gene Sequence

<dnaseqindica>116..206#1405..1485#1975..2093#2683..3302#3400..4592#4688..4767#5159..5254#5339..5412#7415..7559#8086..8169#gttcttcgtcttcgcctcctccccatctcacggcctccgaaaccctaaccctaggggaggaggaaaaagaaaacaggagagagaaaactcgctcgcccgcccgctgcgccgcgcgatggggaggaggaaggagcgccgccttgcggccaaggcggccgcgggcggccgcagggtgaagctcgacctcttcctcgatccctcccccggtgagtcgtcctacggcctctcgaaaaatctgggggggggggggggcgatctcgttcgctttctgatcgatcgcggcgtgcgttcgtgattagtctctcgctcgcctgattgattttagggaatagctgatggttgagagcggttgattcgtgactagtgctagatttgtaggcgggctacgcttttcgatcgagcttgattgattcgggcagcacgagattgttttttgtcttgtggttacttattatcgtttggtgcgtggatcggtccatcccccactgctcgaagctaatcctgaactcaacctgagggctgtctgatccgtgcggatgggtttggaatatgttgtttggttgtttctagtatgtatgatctggaggtagcacacgatatggatttgaaaggaggatgaagtgcctaactgacaaatggtcagcctgttaggctttgagtcagcagtatctaagcagttatccaaagtgttgactaataaggtttaataataccaaagggcacaattgttcgccacatttggaaataaatatatccagcacatcttctgaactggccaaatctgaaacaaaaatatggattatcatcatgtttaaacactaggaagagaagagaagataagtgtcaacatccaaggaacgacaataaatacgttggacggggacaagtgaaactgcactgaacctagataacacaaaatcatgtataaaagctgcacataaacacataaatataacttaaatggtgcttctgatgtttttgccttaaaaaagaataaatagggttgggttgcggcgatagcttgggcaatgaaaaggttcggtggtgaaggcagaggtgaatttatattgaactaaccaaattttgaacatgtgaaatgggagggggcagaaacctcatatagcagtcagagcaaataaaagtttaggtttggttaagggaaggaaggtcgataaacaaattaaatcaacgtttatatagtagaggtgtagttcttggatactcttcctagttttttaacgatgaaaggggtaattagggtagcaatacgtgcttgtaagtagtaacagtatagcgacctaatatgtaagagatattaaattagcatgcctccagaggcattctgatatattttgggatagatatttttgatgaaaagctgactgctgctacggtattttgcagggggaacaccttcgaaagagggagagcgaggggaaaaccatgaccaacaaactggggttcccacttcaccatcttcttcaggtgggtttcatcagtttccttccaagggatttgtaaagaagacatgcctgtggaacctaaatttggtggaaatttggaatttttgtacaagcatatatatgctccacatatatggttgaggcacatgtagggttccggcctgcaaggaacattgagtaaattcttcaaaccgggctgctactgtcaaaattgagtaaatgcctatgggtaatttctcttttggcagcctctaagcgtgcggatcagaatgtgattgttgcctcctcggttcgtatgtctctttctctataattcatctcctaacctggttgttatattattgccaggctgatatactgcatgtaacatagttttaacctatatataccacttgtttgacttctattatactcgaatactgtgtatcttcatatatacttcagaataaagtgcaatgcagattgccacatgcaagctattgcaattttactgatccattcttatttccagataagaaggagaatcctctagcgttgcttgggcaatatagtgatgatgaagaggaagaggaagcagcagatcaacccaatgatgaaacagaggctaatcctgcagatgcaggtgataaggtaattctacctttcattttggcttctctttatccatttctttgggtcgatctacagctttggtttatcttatgggctcttgaacttaagcttatgctagttttgtactatataaagcaacaaataagctggagcctatgaaatggcttataataagctagcttttgttgtgtgtgtgtgttgttggggggggggggggcttgcttggccaacaagccgccctgtttggtacagctactctctagtattgttggagacttggagttcgatatctctagctccaacaaatcttggagttggagctgggcccaaatgctgttagggcgagacattttgttcacacatttgagtctaccgttggatgattaaattacattgttcagtttgcaaactctattttccgcaagaatccaggagaagccatgccaaacaggcccttggcctattcttagcaatattgttttcctgtacactagccactataggaagcaatgttgtcaactatatctctttggcttgagaattgattttattattgaagagtttgaacacacctggcctcatggtaacactactttgcttgtttcagattactcatgaacgtggggacttgactaggaatgaaggtgatgcacaaagtgatctggctggttctgctaatgtccaacaagagttaactgaagctgatgataagaagtgcactggaaatattgctgaagaaaatgttgttgccataaagccaactctggaagatgggactgcaacagcaactgaagctattcctgactcatctgggatgcaaattgttggtgacattggtgggaattggaagactataatgcatgagcagagcaaccagtgttactattggaacacagttactggagaaacctcttgggagattcctaatgtattagcttctgaaattgcagctgacagtgtcacttctgcatctgctcctactcatgtagactactctatggaggcccaagcacatgcccttacccacaatgccgtggaagcttatccaagtgatatatctgtgctaaatggctcagtggcttatgctactttgggaatgggacagcctactcatgatgcttatgcttatgctggagctgtcactagtcatgaatcgatggacattgatcctttgcagcttgcaagatatggcgaggaattgctgcaaagattgaagccgctagaaaggtgcttgttattatttttctgccatttacttcctctttcaagcatttttccacaccttgaactgtataactaaacttttgtcatgcttctgttgtaggttgcatggttccatttacaatgttgaattgctaaaaagagaaattgagatacgaatatcagactgcaatgcactttcatcgtatggatcttctttgcttccattgtggttgcatgctgaggtacaccttaagcaactagaattctcagtttccaaattggaaactagttactctaccactgaacctagacatccagagaaagcagacacagaacacaaaacacctaatgaagctgaagtgatgatgccaccctccaatggtgagggtttgaaatctgaggtgagcactgacgttatgatggatggaaatgttaaaaatgaggagccattttcaacatcatccattcagaaatcagaagaaaatgataccacaacagtcccatcaaaaattgaatccgacaatgatgaagatatggatgtggatatggaggttgacgatgacaatgttgaagagcataagcactcgaattccacgcctattaaggaatatcctccatcagagcaagttcagtcaccggctttgttattgttggacggttcagctgcacccctagaggatagcgacattcctccaccaccaccagaagatgaatggattccacctccaccacctgagaatgaaccagctcctccacctcctcctgaagaacctgctgtgtcatctgtttctactgaaacaattccacagtcctatgtcgatcaagcaaacttggtctatacagttcctggaatggagtactatgctgctgcaggtacagaaggtacacatgccagctattatatgcaaacgagtgagcctcatgtcgttcaagcacaccagaatggttactatgcaccagtatctgcaagtggcatatctattcctgttgatgccacatctattgctccagtacctgtttcttactatagctatccttcagtcactatggctgccactggagaagcagctgagccttctggatactacgcggcatcagtctctgccacttctagcagtgtattagataacacaacaagctcttccaatcttgctcctgcgaatagtagtttgcattccagggagtctgacaacatcatatccaaggaggcaaaacttgcatctttgagccaacctgtgggagcaacatcagcatcagcatccatacagggaagttctgcacaggcttctacaagtaccacaagtcagagcaaaggtaattctgttattcctcataaaaaaactaatatactatcttgtttatggttcctacatggaaaacattgtttaaccttttgctgtgttttgcagttgttcgtagcaagaagcgagctgtttctgttgcaacatcactgaggtctaataagaaggtttcaagtctggtggataaggtagctctctacgatgagcctcctataactgtttccaagcatcatatctgttcacaacatgtgtaattgctaattgtttatgtatatatacctgatgaagtgtatggagattgtgaagtcctcaactgcctcttccaacaaagaactagagcagcttaaacttgtttatttccttctgtcaaatagaggttatgctgaaaaagattctgaaaacatattaactatgtgctacctgatttatttttctcatttcaccatttcttagtttaaaggcagatcaatctgtttacatggtaaggcataaaatgaggtgagtattgatgtgcatatacttattcctccaccaatttcactttgctaacacaactgcttgtgtattttcttataatagtggaaagctgctaaggaggagcttcgtgatgaggaggatgaagagccagaaagtgctttggacgcattagaaagaaagcgtcaaaaggatattgatgtaaacttctctttcgcctgacatcacatacatgaaatatctttgaagttgccaattcatttatgttccttccatttgtttcaggagtggcgcaagcaacagatagccagcggagaagctcaggaaaatgccaattttgttccccttggtggtgactggtattgtttccttactatatgatagtttgattttaataccttcattaacttaccagaatactagttaagacctaccacatattacttctgactgctgtcatggctattttgttttatcttgtgtttgcagtattaccatatctgatatctgtttgtatttttcatatgataatcatttgttctttgtaatgtacactagcttaatatgttttagctgcctgcttttgagggtttggtacttcactttggttgcatgtgtatgactacaaaaaaagttatgtatgaacattttttggaggtatagcaaactaatgtaattagattagtaaatagatgatgtaaaggatgaccttatttgcccctgtcaacttcatgtgatctcttatttgcccttgatgtttcattggatccatccatgtcatgtgacagttaggggcaaataattggttgaagtgatgggatgggtcaggttgggttgaacccatttttcagggtgtttggtttgaggacaggtgggatgggatgatccctaaaagagaatattcccttgagatccgggttgcccttgtcccttaaaaagggcagaccaatccaacccatttttctcattgataggccatcccttgggatgtgtttggtttggggatgaggtgggatgggtcatgggttggactcatccttctttttaggacgggatcattccatctattcgtttggcatgagggatggaaaatgatcctagttttcggggatgacccacatgtcaatgagacagaaaagtgggatggattggtccgccaatttttgagggaccaatccaacccggatcttaggagaatatttctttttagggatcatcctatcccacctatcctcaaaccaaacaccttgaaaaatgggttcgacccaacccaacccaacccactccatccctggaaccaaacacatgcttaatgttttggtttggggatgaggtggcatggattagacccatccctgtttttatgggatgggatggtcccatccatgtgtttggcacaagggatggaatgatcctatttttttgagaaattggactattggacggtgtagcagttttcgaggtatgaagctgacctagatctagagggaatattccctttcaggaatcatcccatctcacctgtccccaaaccaaacaccctgacaagtggattcacgacccgacccatcccatcacttcaatcaaaacacatgctttgcctctgtttgggatggatggatggatgggggcatcccattccaaaaacatggatgagtgcaacccaactcacctcctgaaccaaacacaacaaataaggattttattccaacttgaaataggtataggtaatgtctgattcgtgcggccaaacctctgccagttgagcaatgttctgtggttgctaccagtgatagctggtttgatgactgccaaaaaactgaacttctgctttgggctagttagtttcctttggagtttgttggattcaatatggagtgttttgttgaaacagctggaaaccatctcggagatgcccaattagacctccagctggtttctggaacttggccatatgcctatatatcttatactctggtattggagaaatgattggacatgtctcaattcgaactttaaaagctttttggattccgatatcttttcaactatttagatgggatgtctaaaaatagttgttgatttgccttgacataagttgtgggtagaccttgaatcatgccaccattgtacaaattaagattacatgtcctttatgctttttttttggtgaactgtttagtttataatatggcaagttttaagttttctacaacaaaatgctatagatttaggtatgcaatggaaaactgttgactaactgggaattgggaacccaactaccaatgttttgagggagtacgtgggtttttccgttgcatatattgcgggtttttcagtttgagcaaatattttgtgcaggcgtgatcgtgtgaaacgcaggagagcggaagcaaaaaaggaggcaaatagcgagactatttctgcaccagtgagtgtcaccgatctgcataaaggacaacctgatcttgcagagctctgcaagggtcttccttctggatggcaggttagtacaatttttactgctgtttctattgtgactagttgagctcaacctatattaaatggagtaaattgaagaaaattcaacctggcaagcgaaacattttgaagctaattcgagaacaagataggagctagttaatctaacaagctaattcgagtttttaccactcagaacatccttcacctcatcaatctcttcaccagagatgtgattacagttgaagttcagttgcacaaagactggcttgttagtagcatgggtaaagcaccgagctccaacctctggagcatattcgtggtaacaaccttccttcagatcccagtgtccttccaatgactagagatacgtctagaataaaatccagcatgcaacttgattttctgatgacaattcaaatacacactaaaagaaagtcttgaggaccaagttcacgtattctctgctccagtatcgtgccatgatagccttgcttatttaacatttacgttcgttaaaatggaagtgctgacttttccattgttggcaggcatacctggatgaatctacaaagcaggtgtactacgggaacagcctcacatcagagacgacatgggatcggcctaccaagtgaagataggactaggaagtctagaacatgttttgcggtttctggttgggtcaactgccaattcagtgattcccctatctagataactagatatcctctcccccctaaggagcgaatgacactgtagctggcatattttgagagaagataagttttgtatgtttaaaattaccttggagcaaagaaaagttttgcatgatt</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0298400, RefSeq:Os06g0298400