Os06g0309000

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Revision as of 09:16, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0309000| Description = Zinc finger, FYVE/PHD-type domain containing protein| Version = NM_001064013.1 GI:115467757 GeneID:4340852| Length =...")
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Gene Name

Os06g0309000

Description

Zinc finger, FYVE/PHD-type domain containing protein

Version

NM_001064013.1 GI:115467757 GeneID:4340852

Length

8577 bp

Definition

Oryza sativa Japonica Group Os06g0309000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:11794019..11802595

Sequence Coding Region

11794358..11794406,11796326..11796468,11796813..11796926,11797099..11798132,11799967..11800291
,11802087..11802410

Expression

GEO Profiles:Os06g0309000

Genome Context

<gbrowseImage1> name=NC_008399:11794019..11802595 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:11794019..11802595 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggagcgggcgggagcggaagcggcggcggaggggggagatggggcgggtggcggggatggtgatggtgctcgcggcggcggggcaggcgcggggcgggggcgcgcccacggcggcggagcgcgcgctcgcggcggtggcgcgggagcggctgctggaggcggcggagttgctggcgcggcccagggagctgttcccgagggaggcggtgcgggcgctcgtggaggacctcggcctcgcccgcggcagggacccctccgccatgggctaccgcccgcgcagggcctccatcgccgagaggatcctcctcaccaagcgcaagatggaagaaatcaaggaggctccagtgtatccaacaactaatgtgtctcaaacaacagccacgagagcaacaactgtcttccaacatggagcttctaagccaactactgggttgcccatgaatatttcagctgttgcctcattccctgtcacaaccccacctactataccatccccaaatatcttgaagcagacacagttaaatgaatcaccatcaggagtgaaagcagctggtacctcttcaattgtttcagtaccatctgttggtcctacaaatattaaagtggaaaagggtgttaatagtcctacttgcacacaaaatggagcaactataggtcaagcaaataaatcagctcatcttacagcaactatgtctaatccaaatatagtaccttcttccagtcatgaagggacgcctcagcatgaaaaggcacctgtaattcgacccatcaccgtaaaaaatggtatgacacatcaatctcgacctggagtatcatttattcagcgacaatccacctttcccaatcatagtgcaattgcaaaaacggttcaacaagttctgcatcaacctgtcaatcatcctaactggatcccaccatcaactgagtatatgcgtagtgggctaggttgtcaagtatgtaaagtttttatcatcgacatacatagtatgattatttgtgatgcttgtgagaggggcatacacttaaaatgccttcagcatgacggggtcaatgttctaccacctaaagctgagtggtattgtccaacatgtgtagctcgtagcaagggaaaacccctgcctccgaaatatggcaaggttacaagaactgttgttgcaccaaaggttaatcttattagtggagttccttcgcagggagtttctgaaaatcgaactacaaaggataataatcaagaacttgcagcagatggaacagttatcgataaaaactccagtgaagctaacaggattgtacataatagtgataagttggctttggagagttcaaaagaacaatcacaatcaggctctgcttctgcagctgttgataagggaagaggaaaacctcaaggtgtgggaacaatggaaaataatgccatttcagaacgtggcaatgttcatgagttgacatcgaatggggatttatctacaaagaatgaaattgttataggcgatgctaaggataaaactattgtttgcagcacagatcacagtattgtgggttgggttggtgatcctctcagagtagtcgagaacaagacttactattactcttgtaacattgatggtatagcatacaatcttgatgatcatattttggttgcctccaaagataaggagtctgctccatccaagctgcagtcactgtgggaagagcatgattctaggtctaagatggctttggttagtccatatttctttgcttcagatattccagaattgatcagtaaaccatgcactgcagaagagaatgaggtatttgcttcctgtaatcaaagaactgtaacagtttccgcgatttgtggccaatgtgaggttcttcatgttgacaagtttagagaagaaactaagggaagtcaggttgtcagtagtaggctacatccaattttcctctgcaggtggaagtatgatgaatcaacaagcagtttcagtagtgtcaataattag</cdnaseq>

Protein Sequence

<aaseq>MGSGRERKRRRRGEMGRVAGMVMVLAAAGQARGGGAPTAAERAL AAVARERLLEAAELLARPRELFPREAVRALVEDLGLARGRDPSAMGYRPRRASIAERI LLTKRKMEEIKEAPVYPTTNVSQTTATRATTVFQHGASKPTTGLPMNISAVASFPVTT PPTIPSPNILKQTQLNESPSGVKAAGTSSIVSVPSVGPTNIKVEKGVNSPTCTQNGAT IGQANKSAHLTATMSNPNIVPSSSHEGTPQHEKAPVIRPITVKNGMTHQSRPGVSFIQ RQSTFPNHSAIAKTVQQVLHQPVNHPNWIPPSTEYMRSGLGCQVCKVFIIDIHSMIIC DACERGIHLKCLQHDGVNVLPPKAEWYCPTCVARSKGKPLPPKYGKVTRTVVAPKVNL ISGVPSQGVSENRTTKDNNQELAADGTVIDKNSSEANRIVHNSDKLALESSKEQSQSG SASAAVDKGRGKPQGVGTMENNAISERGNVHELTSNGDLSTKNEIVIGDAKDKTIVCS TDHSIVGWVGDPLRVVENKTYYYSCNIDGIAYNLDDHILVASKDKESAPSKLQSLWEE HDSRSKMALVSPYFFASDIPELISKPCTAEENEVFASCNQRTVTVSAICGQCEVLHVD KFREETKGSQVVSSRLHPIFLCRWKYDESTSSFSSVNN</aaseq>

Gene Sequence

<dnaseqindica>8190..8238#6128..6270#5670..5783#4464..5497#2305..2629#186..509#gtgtggctgtgtcgcaaaaatcttccccaatctcgctcgctctccgccccccctcgcttcgcttcgcgccgcgctccaacgatccaccgccaccctcgcgccaaaccgagccatttcaaaactcctccccccgcccttcccgaaccttctagaagcccctcccctccccttcccgcgcacgggggatggggagcgggcgggagcggaagcggcggcggaggggggagatggggcgggtggcggggatggtgatggtgctcgcggcggcggggcaggcgcggggcgggggcgcgcccacggcggcggagcgcgcgctcgcggcggtggcgcgggagcggctgctggaggcggcggagttgctggcgcggcccagggagctgttcccgagggaggcggtgcgggcgctcgtggaggacctcggcctcgcccgcggcagggacccctccgccatgggctaccgcccgcgcagggcctccatcgccgagaggatcctcctcaccaagcgcaaggtttgcccacataagcctctttcacactccagctcttcttctcgttcactctgtgagtatatgtttcgattggatgtgcgtacgtacaagaggggtatatggaataatctcgaagagatccctgtgtttggtttggtgaattgaaataaatggttcaggatggtggagtactaagagtaagtttaatagtatagccaactattagctccaaatcatctatagtcaattcatacaatacttaactacaaatatatactccctccatcccataatataaggcgtgcacgcatttcaagattcaacctttaaaacatttgaccaacacttagtataatatgaaataaattttatttgttaaaaattatatcattagattgagatttaaatttactttcaaatggttataattttgttgctacaaactttataatatatgagaaattataagataaagattagttctggagactctgccaactttggccgcgccttatattataggatagagggagtactacatcattaataattggtcccacttgtcatacacacatagcgtcttgacgtccgtgctgcggctaggtacaaatctgtagctcgtttctcttctctctcatcttttgtatcctccacatgtgcttatagttgacttatagtcctttattgtacctactctaagtgtacaacttctaagaattatgctgccagaggatatgcttttccgttcaacgaaattcattgaatggcaccatcactggaaggcatctcactggacctctcacatgtagtaacatgtgtgttggtcagtaatagaaccaacaattaattccaccaaacaacaacgggaatatcagaataataagtaaaacgccaaaataaaataaaaattatcaaacttaatcttgtaacgtcggatatcattccatgcaactaacgaaacaaatccctgccatctcatcccattcaacttcatctctccaaccaaacaagcccatgtgatgtgctgacactagaaagtgttcatccagaaaattttattacatataatgttacgtagagctttcaccacgctctcatgtaggtccttgtcgtcacaacttacctgaaattatgtataaccataacttatgttacacaattccccctcaggttttataagttatggtttttgaatccataaggttatttctgctgcattattttgtttcaagaggaaatgtttggaatttgtcataaggaggtggtatcaatgtatatcttactaaaagagcaaaagttcctcctgcaaccataatttggcatgatcggcttcaggacacttgtccggaaattctacatgaccagtaaaatctgagaacagttatggatccatgaacttcactggaacacgctatggtttcttgacgattttgagaggagatgaactatacccaaaatatccatagtctctgttttatactccctctggtcattaatatatgacacttttaacactaaaatactaattttagttttaaaaatgtcatgtattaatgaacggagggaatgccatatctaggcatgccccatgtgcctcatatattaatgtttcattccaaatgttcttgggctcaagtaaaagctgccatttgaaacccctcttgttgatctctaatatttcaaaatggtaataaatacatgttgtgcagcaaattttctgtaacatatttggttttattaatgcagattttctaaagggaaaatgtatgcatctctaaagtttgtgcttttcttccccttttttattttgtcatagatggaagaaatcaaggaggctccagtgtatccaacaactaatgtgtctcaaacaacagccacgagagcaacaactgtcttccaacatggagcttctaagccaactactgggttgcccatgaatatttcagctgttgcctcattccctgtcacaaccccacctactataccatccccaaatatcttgaagcagacacagttaaatgaatcaccatcaggagtgaaagcagctggtacctcttcaattgtttcagtaccatctgttggtcctacaaatattaaagtggaaaagggtgttaatagtcctacttgcacacaaaatggaggtattataaacatattctttcatgactggttttcttacagtatcaatgttataattgttattcctattcattatctatgagtattaggtttcttgcttgaattaggacatagtgcttaatgttttatctcgtgaattttgtgtaaattttataaatactagcacagcacatgtgcgttctgacagatgataaataattgtgccatatgatctaactaaaaaatgaaacaaaataatctacatggtatcaattagttaccgacatatttgtgtgaacaaagtaatttttttagaaaggatcatgcaaactgcacaaacgggtcatagagcacaccatcactcccaactccgctttttgaaagagtgaagattatccccctcatactcatattgttaatatcatgcacaaaactacagatttaagttgagtaaatagcttataggaatatggtctggtatttctcagaatagttactcccagtagtttatacatttttaatgtacatcaattgacttctttattttaagtgtttgcctagtcagctgactagcctaactagtcactagtcagcggcaaaccgacctggctcctgaacatagggtaatcggtgggttggtcggcctaattggtcagttcttagtctgtgactagtcttttgtatttctttggcagccgttttgtactaaaccctgacctaatgggcttaattgagtccttttggactcttttccttcttaatataatgatgcgcagcctgcgtgtttgagaaaaaaattaggcaggccaactaaaagatagaaaactggcatgggctgaaatttttgggcccaaaggcactggctgggggtggagataactagggttagacttgactccataaatccccctggctcctctggctctctcacttcctctttctgatcccacccgccgacttgccccttcccatctccctccatgctggccccgcgtgccggcgcccctgtttgtcctccgggcgtgcaaccgacaaccctgctgggtttccttgcaccagccccatgctgccccttctggtattcccctcacccagacccatgccccgacgtgctcccctgccaccagttgcagtgtgtgcggtttgaatttttaaaatcgaaatgtcaaatctcagtttcattctttcaatggtctccaaatatactatgaaacatgtcaaaagtaactagctgcttgtgtagaaaatttactgttggctatattggaatcatcgactagtcagcctagtctccagtaggcgaggcaccaaaaagcgactaggtgaacactattacttgtgtcttaggtgttctgcaatagtcatttacattttcaatgtataatttgtatggtgtacattgcatttgaaaaggaagtaaaaccatttggagcttaatagcagttctatttttcctcatgttcctcccaaaggtttatgtcccactttaatcagctattcagaagtttattttatgctttaaataaaattactgaaatttgacatcttgacaacaacatgattgccagtctgggaatgttattcatccttttagttatgtacttctctgaagtcctctgtgatgattgtgaattgttgctggtcctctctttatagaatgatcccagtccaactcttagaaaaagccacaaacacttccacaaatcctcatgtgctccaggggagaaatgtggaatggacaaataaagtaacttctttattgtggaatacttacaccatgccattttgatgattttagtttcatattggtcatctttgatcccctgactgatttgcctaagtcacctgtcactgcagcaactataggtcaagcaaataaatcagctcatcttacagcaactatgtctaatccaaatatagtaccttcttccagtcatgaagggacgcctcagcatgaaaaggcacctgtaattcgacccatcaccgtaaaaaatggtatgacacatcaatctcgacctggagtatcatttattcagcgacaatccacctttcccaatcatagtgcaattgcaaaaacggttcaacaagttctgcatcaacctgtcaatcatcctaactggatcccaccatcaactgagtatatgcgtagtgggctaggttgtcaagtatgtaaagtttttatcatcgacatacatagtatgattatttgtgatgcttgtgagaggggcatacacttaaaatgccttcagcatgacggggtcaatgttctaccacctaaagctgagtggtattgtccaacatgtgtagctcgtagcaagggaaaacccctgcctccgaaatatggcaaggttacaagaactgttgttgcaccaaaggttaatcttattagtggagttccttcgcagggagtttctgaaaatcgaactacaaaggataataatcaagaacttgcagcagatggaacagttatcgataaaaactccagtgaagctaacaggattgtacataatagtgataagttggctttggagagttcaaaagaacaatcacaatcaggctctgcttctgcagctgttgataagggaagaggaaaacctcaaggtgtgggaacaatggaaaataatgccatttcagaacgtggcaatgttcatgagttgacatcgaatggggatttatctacaaagaatgaaattgttataggcgatgctaaggataaaactattgtttgcagcacagatcacagtattgtgggttgggttggtgatcctctcagagtagtcgagaacaagacttactattactcttgtaacattgatggtatagcatacaatcttgatgatcatattttggttgcctccaaagataaggagtctgctccatccaagctgcaggtatctttcctcttaatataccctacatactcttgtatgatatggggcgcaaacccctctgcgtactggggtgtttgagtaaccgccccctatgcacctgtcagatcatcttgtggtagactttgtaagtgtattatctctaaaatagtcaagttattgttaccttttgcagtcactgtgggaagagcatgattctaggtctaagatggctttggttagtccatatttctttgcttcagatattccagaattgatcagtaaaccatgcactgcagaagagaatgaggtgagccaactaaccattgtgaagaatatataatctgtttaggaggattgcttttggctaggggaagtatgtaatttgcattatcaatagttcttttaaatagcatgaaaaatctatgtaattcacatttggcttttaaatagctgattgttaaatagtagatttttaatctgcagtgctggaaatctcgtgtatcgataaattagattagacattttttatgcttctcttgtgtggcaatatattgccaaattttcacggtgaggaactgattgttcttgttgtgataaatcataaatgagaataacttactacatttctttgatggtgttatgttcttccaggtatttgcttcctgtaatcaaagaactgtaacagtttccgcgatttgtggccaatgtgaggttcttcatgttgacaagtttagagaagaaactaagggaagtcaggttgtcagtagtaggctacatccaattttcctctgcaggtttgtctttttgatgctttgtcttaaattagtgggtgaatgatgagttaaaatttgaaatcaaatcctttaaaaaagttaatgttaactaatatacatttgttggaacctggctgtgcaaccaacccattgggcagccacagccctgccttacttggagaaaatagtagacttggcttgcaggagtcacactattaaaatagaaattgtgtatcatgatcttttttatgtaacaaacatttgaaacttgtattatctaatacatcatcctacttggccttaattcatgtcaatgcatatattgaatacagtaccgaactaccaaacataaaggccacttcctccagggtcattcaattgtcaaaatatttttttctcaaaatgtgacaaagggcaaaagatatttgtaatacacttcctccagggtcattcaattgtcaaaatatttttttctcaaaatgtgacaaagggcaaaagagatttgtaatagttgtccaaatttttcccttcatacaacctagtcatataagactattgtaaggttagaaggcgagttagtaacacgcaggagtgttactagcatatctttttttaaatgaattagtaacacaaattatagtaagaaatagttgcagctaacaaattatttgggatccaagtcaaggattgatcggagcacatagtgatcttgtctactctgcttgattaggattcattctgccagctaagattgtttggattgtgatccaaatggtaaaatctaccgtctgaatcaaaatcttgactcgtaggttccaggaaaactaggtttgtaagatcatagtgtaatgtacgcgttcgaccattccacatgtacgttctgctgctttccagtacatgggcctgtgatgtggtcaggtgtagggctgtcaacgagccgagctcgagcgagcttccatgtgtaggctcgagctcgctatagactcgagtcgagctcgagccgagcctaggtttgtcacgagcttgaagttgagctcgtgctcggctcgttcgagcttcgagcttctctcaagcctgcttcgtgcggtagaatactggaacaattcatcccattcaaagaaaaagctaacactgtgatgcatgattagatggctaaaaataatatactagtgctcctatgtatactagtgcaactgtgcaagccgcacactagtactcctactagtacacactagtactcctactctcttgttgggaaatgggacaacaaatgcatagtgctccctcctgccctgccactgctagtacatgtgcagttgtgctactccagtactactcctactagagaatttgaagagtaagagagagagagggggaggaaatgcctaggagaaagaacatgagccagacgttgaggctcgccgagttattcgagctcggctcggtaggctcgcgagcttaaagtcaagctcgagctcgatttgattcttagacgagccgagctcgaatcaagctcataacgaatcaagctcgagtagctcacgagtctcgagcatttttgacagccctagtcaggtgcaacttatgtatactactgcgcacaaaatttttgtacccctttccacatagcttgcgctcaagcagcagtaagctgcatggttgaaatctttgtgcatacaagagtatctgttggcaacttgtcataatatcttttagtagttgaatatatttgtggttgaatatttcctcatattttagtagtgagaaggcaacttccaactttgcaaactttgattaatgtctgttggaatccattttcagaacccagtggtttctgttcagagtaattgcttataatttttgttcattccgactggttcagtttatttgttgtgctcaacaaactttacataatctgctctctgcaatttatttgacaggtggaagtatgatgaatcaacaagcagtttcagtagtgtcaataattagatgagattctgtcattcttttgaatcacaactgtacatttgagatgctagtatcagctgttttgcctagatgtttaaacgaagtgggaagaaagctacaccccttggaaaaattttatgcaagttggagagcagcgagtccatgttccttcaggcgttcattacctgtgcaaatcttcgctgctttaattaggttcacccttcttaacagagtagtggtgaggctcgttacagtcaaaatctatgcgtgaaactttatacacgtgtttgatgcaaacatccaatccaaacgttcctctgtaaaacttctctcagcggtttacttgccgttctttctttc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0309000, RefSeq:Os06g0309000