Os06g0318500

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Revision as of 09:16, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0318500| Description = Sodium/hydrogen exchanger family protein| Version = NM_001187824.1 GI:297724778 GeneID:9270505| Length = 6548 bp| D...")
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Gene Name

Os06g0318500

Description

Sodium/hydrogen exchanger family protein

Version

NM_001187824.1 GI:297724778 GeneID:9270505

Length

6548 bp

Definition

Oryza sativa Japonica Group Os06g0318500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:12401263..12407810

Sequence Coding Region

12401263..12401442,12402448..12402566,12402719..12402816,12403015..12403074,12403124..12403194
,12403286..12403480,12403599..12403645,12403736..12403802,12403864..12403869
,12403893..12403993,12404218..12404319,12404386..12404527,12404782..12404865
,12404964..12405270,12406242..12406395,12407642..12407810

Expression

GEO Profiles:Os06g0318500

Genome Context

<gbrowseImage1> name=NC_008399:12401263..12407810 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:12401263..12407810 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtggtggtggtggtggtcggaggcggtggtggtgggcggagggacgggcggcgggagcagcggcacggtggtgtccatctgcgtgttcacggcggtgctgtgcgtgtgcctcgtcgccggccacctcctcgaggagaacaagtgggtcaacgagtccatcaccgccctcctcatcggttgtgttgtaggtgctatcatatttctgttgagtgaaggcaagaactcgcgaatcctgaggttcgacgagcagctcttcttcatctatgtacttcctcccataatcttcaatgcaggcttccaggtcaagaagaagcagttctttcacaattttctcaccataatgtcctttgggatattcggcgtgttcatctcagttgcgatagtttcaacaggttgctactggctcttcccaaaagttggttttggggaccttggcgcggtagattatctagatctaatcttatttacaactacagctttgggagcaatattttcctcaacagatactgtctgcacattgcaggtcatcagccaggatgagacacctagattgtacagtttggtgtttggggaaggagtggtcaatgatgcaacctcagttgtgcttttcaacgctataaagaatctggatatcactcagctcaaaggcggggttgcgctaaaagtcatttcagattttctctacctgttcttcactagcactatgcttggagttacaattgggctatcaactgcttatgctctcaaagctctgtattttggtaggcactccactgatagggaagtagctttgatggctctcatggcttatttgtcatatatgctggcagagggtaagtttcttgatctgagtgggattttgatggtgttcttttgtggaattgttatgtcccattacgcatggcataatgtgacggaaagctcaagaatcacaaccaggcacatatttgcaacgctgtcatttatcgccgagacattcatctttctttatgttggaatggatgcacttgacattgataagtggaaaacatcagagacaagctttaaaacatcactcggtatctttggaatcatcatatcgctcgttttattgggaagagctgcattcgttttccctctatccattatgtcaaattacatgagtgggagttctgaaaaagcgccaatcacattcaatcaccagttcaccttttcaggtgtaactttggatccagttcatgcaaccatcatcaccagtacaatcattgtagtatttttcaccactctggtgtttggcttcttgacaaggccactcataagtgccatactcccgcatcaacaccggcaatcaacgacaccggggaccggaggaggaggccgtagcacgggcagcaactccccgaaggacgacttcatcatgccgttcctctcgcctgatgaagaggcgtcagggagcggcagtgggttcctccaggccaagaggagcatctccatgctcctggagaggccagtccacacggtgcacatctactggaggaagttcgacgacaggttcatgaggcccatcttcggtggaccgatggagcgcgatcgcggtgactcgagatgccgggagagtatttgcggtgatggactgggagtcggcttggggataagacgacgtccgtggtggtcagagatcatgcgggatactaaggccagagttcaatacacgtggttggtgaagattccatatggcatacgatggagggaatcttcaccggagaaaaagccgacgaggacatccatggcagaagcaaccaagacgaaggagccggacgccgacgaccccttcgagctgtacaaaaagggattaacccaacaacgggagatacccgagaagtctaaacctaagcttactagtgaaggaaggaactag</cdnaseq>

Protein Sequence

<aaseq>MAWWWWWSEAVVVGGGTGGGSSGTVVSICVFTAVLCVCLVAGHL LEENKWVNESITALLIGCVVGAIIFLLSEGKNSRILRFDEQLFFIYVLPPIIFNAGFQ VKKKQFFHNFLTIMSFGIFGVFISVAIVSTGCYWLFPKVGFGDLGAVDYLDLILFTTT ALGAIFSSTDTVCTLQVISQDETPRLYSLVFGEGVVNDATSVVLFNAIKNLDITQLKG GVALKVISDFLYLFFTSTMLGVTIGLSTAYALKALYFGRHSTDREVALMALMAYLSYM LAEGKFLDLSGILMVFFCGIVMSHYAWHNVTESSRITTRHIFATLSFIAETFIFLYVG MDALDIDKWKTSETSFKTSLGIFGIIISLVLLGRAAFVFPLSIMSNYMSGSSEKAPIT FNHQFTFSGVTLDPVHATIITSTIIVVFFTTLVFGFLTRPLISAILPHQHRQSTTPGT GGGGRSTGSNSPKDDFIMPFLSPDEEASGSGSGFLQAKRSISMLLERPVHTVHIYWRK FDDRFMRPIFGGPMERDRGDSRCRESICGDGLGVGLGIRRRPWWSEIMRDTKARVQYT WLVKIPYGIRWRESSPEKKPTRTSMAEATKTKEPDADDPFELYKKGLTQQREIPEKSK PKLTSEGRN</aaseq>

Gene Sequence

<dnaseqindica>1..180#1186..1304#1457..1554#1753..1812#1862..1932#2024..2218#2337..2383#2474..2540#2602..2607#2631..2731#2956..3057#3124..3265#3520..3603#3702..4008#4980..5133#6380..6548#atggcgtggtggtggtggtggtcggaggcggtggtggtgggcggagggacgggcggcgggagcagcggcacggtggtgtccatctgcgtgttcacggcggtgctgtgcgtgtgcctcgtcgccggccacctcctcgaggagaacaagtgggtcaacgagtccatcaccgccctcctcatcgtacgtcctagtacctcatcacccctcctgataattacccccaaccacacgtacacaacacatgcatatatatatatatgcatattgcataacctgtctacgactccctcatcaagcaattaattaagccgttcgagctctctcttttgatcattcataacctcaactcaaccgcgccgtacgcgcgcgttgctagctgtttgttccacagatactctctatcctaaaagaaaccaacataggtgaggatgatatgaccatatccagattcattgtataaagctagctacatcgtattttcatctaggttggtcttttgccaacttcgcgtggcgattcacagatacgattcaataattgtggtttctttatcttgtagtgttggtattcattagtgtgtgtttgcttaatgtatggttagagtgtggttgtgaactcgctcttctgagaacatttttgggcgtttttgggtgattttttgtaataattggctatacctctttcaataaaagccggaatgatattacattatctaaaaaaaattaggatggattgagcggtccgttgtcgcatgttcagacttcggaacgacttttctttttctggggattctacttgattttccagctagctaaatgtgcttcactgaaactgcagttttgtttaactaatgtttaattaatacgatatatttctaagaacttggtagcacatcagaggtgacaaaaaaagtggagtgctcttccttaattaagaaaacaaacagtatttactccaaggactgctggtgagaacatttattcagtgccttcctttttattatgcttgcaaaggtatcaacagctactactactggtactatttataatttgcgcaggaccagttccaattattttagtactatttcattcaattcctagtagcttattagctcctgttacattccaatgatggtacgattaaggactccagttattaaaaagtgtgtgtggaatactcttgcagggttgtgttgtaggtgctatcatatttctgttgagtgaaggcaagaactcgcgaatcctgaggttcgacgagcagctcttcttcatctatgtacttcctcccataatcttcaatgcagggtatgtgtgcgagtatgacatagtactagaaatcaaattcttgcttttgggtttacaggtagtcaacactcaacaagagatagttctttcagatttctcccattgagtgttcatgcatgcatgacatattgacattacttttgccttttcagcttccaggtcaagaagaagcagttctttcacaattttctcaccataatgtcctttgggatattcggcgtgttcatctcagttgcgatagtttcaacaggtagtttgttaatttataaacctttatgcatgtacacactgctaaaaataaccatttttttatctttaagatatgtcaactgtaattttgagtctaactgcctaaataattttatttcaccatttgtcaattttatttgtaaatgatggaatactttcaattaaaaagaaataatgatgggatacttcttgataccaggttgctactggctcttcccaaaagttggttttggggaccttggcgcggtagattatctaggtgtgtctttatgttttgcaatttgtttacgttctcctttttacttcagatctaatcttatttacaactacagctttgggagcaatattttcctcaacagatactgtctgcacattgcaggttcgttatacagttgtgttacaaattttgaatacattttgtttattctaacttagctgttgcaaataaaatcatccgatctcaaattcaggtcatcagccaggatgagacacctagattgtacagtttggtgtttggggaaggagtggtcaatgatgcaacctcagttgtgcttttcaacgctataaagaatctggatatcactcagctcaaaggcggggttgcgctaaaagtcatttcagattttctctacctgttcttcactagcactatgcttggagttacagtaagcaaacatctttcagatatcaggtttttcagtataacaatgctgttactctgtttttctcagaattaaggtgaccaataacttttattacttctgttttactactaattatcagattgggctatcaactgcttatgctctcaaagctctgtattttggtaggtaagtatagcaagccattggatcatgatccaactttgaagtcatcttgttgcactgtttaaatttgaatatctcctcttatttctgtaggcactccactgatagggaagtagctttgatggctctcatggcttatttgtcatatatgctggcagaggtaagggtgccttgagataattgttggcattttaacatttgctctgataatgtgcctgaagggtaaggtgtgtactatctttttgagcagtttcttgatctgagtgggattttgatggtgttcttttgtggaattgttatgtcccattacgcatggcataatgtgacggaaagctcaagaatcacaaccaggtattatgaagtcagtaccacatttgtgaaagactagtattaatttttagagaaatttatagctgtgttaagcattatatttgagcaattttacggtcgttgagaaggtactatgaggtaccaaaaatttagtgtaaaatttgttacctcatagtacctaggttgtaaattaagattatgaagtaaattaaatgactcatttggtgtaatggatgcaatcataggcacatatttgcaacgctgtcatttatcgccgagacattcatctttctttatgttggaatggatgcacttgacattgataagtggaaaacatcagagacaaggtaatcaccgaaatgcacatttgttacaaaatggaaggagtaaacatcatattatcattttggcagctttaaaacatcactcggtatctttggaatcatcatatcgctcgttttattgggaagagctgcattcgttttccctctatccattatgtcaaattacatgagtgggagttctgaaaaagcgccaatcacattcaatcaccaggtttcttctcagccgttggtttcaatttcatacagtaactcttgaattgacttgtagggaattcacaacgaattaaaatatgtactctaaattcctcaaacattcaaggtagtgatttggtgggcgggcctcatgagaggagctgtttcgatcgcactagcatataatcaggtacgattcatattcagtgtcaggatatacatatctgacaagaagttgatatacattgatttgtcaaacttgcatgctttcagttcaccttttcaggtgtaactttggatccagttcatgcaaccatcatcaccagtacaatcattgtagtatttttcaccactctggtataaacctttaacactgacggctctgcatatgatgtaatctaatccataaaatgttcagacatgaggcatctgagacatctccataatttcatcaggtgtttggcttcttgacaaggccactcataagtgccatactcccgcatcaacaccggcaatcaacgacaccggggaccggaggaggaggccgtagcacgggcagcaactccccgaaggacgacttcatcatgccgttcctctcgcctgatgaagaggcgtcagggagcggcagtgggttcctccaggccaagaggagcatctccatgctcctggagaggccagtccacacggtgcacatctactggaggaagttcgacgacaggttcatgaggcccatcttcggtggaccgatggagcgcgatcgcggtaactgttactgatcgagcagaaatagttggcacattgccactggaggtggaagatcaagtgcaggaagaatgggtgttttgttcatgttcagttcttcaatagctccagtgagcatatatacctaagagattctactgataagacctgtgagacaatctctgaaaatctgaaattctgaattcttctgtcgtttaagctttgttaccgtaagtgtaaaaatggtatggttggaacaatttcaagcaatttcaggccactctttatcctgatacttaacatcagctaatatcgcagttccagagtgaactgatggaagtagaagtggaagaaccagacaaagtgcgttttgttgtgggttgaaaaatactagtacaaatgctccagccgtcgtgatcacttgagctgtattccttgaattactctctgatttgagcggttgtttcacaccatacttattcccaaagacgagctgcagcaagtgatcatagccggcaagcaagggtctctgcctgacggtagtctcccaaaatctctattttccttaaacagtgcagattgttattcatgtaaaatcaaaagtgtttttaattattattctgtgatgaacaattggcatcggagattattagttctgttatttcgaatttatttgcgaagtggttttggagatgattggttttcacaggtaatctacagatactgttgtctgttggaccggtcagaccgggcaggtgttgccggtcagaccggcgtgtatcgcgtggtcagaccggcgcagctcgcggtctgatcggttgactctgtgtcggtttcggtttcggattgtttgtttggatatccgtgattgttcatgattatggcttctagatggatactatgcgtatgtaatactgttgtttgctactaatgagtcaagttagggatagcttagtctcggaatatggtttctttgtttgttttatgtgtaggtgactcgagatgccgggagagtatttgcggtgatggactgggagtcggcttggggataagacgacgtccgtggtggtcagagatcatgcgggatactaaggccagagttcaatacacgtggttggtgaagattccatatggcatacgatggaggtattgtgtgcgtatgggatgcagagtcgaatttggaaggagtccaaatttggtatgaatggttatgtaaagtttgtttcttgtactagatggtttcctagggggattaggacttctagtatgagtttggttcgtggctttaggctgcctaccttgggtataaatagagagggagcgtgaggcttcccggtatcgcttttgagagcaattgagttgatggttgagttaaggtttcgagtttagtcgagatttttgtaaggagtattgttggtgcactttgtaaacacatagagaatcagtaaagtcgtcatccactttaagagttcttcgatttgtgttttaccgggtttcggcggtctaaccggagacacactggcagtcagaccggcggcatcgcaacaatcagaccggcggcgtaagggcggtcagaccgtcggcggcgacaggcgcaggcaggcgatttcggtggttcgaccgatcgatctacaacgatcagaccgacgtgttccaggcggtcagaccggcgtagctacttcggtcagaccgcgatccgtcgaatttgagggtaacttttattttcgctaaaagttttggtttttggcataccaagcattcacctccccctctggttggcttagttgttgtgtttcgatcctacaattcagattataaaactagattgttattcagattataaaattaaattcggtggtagtagctaactagaagctagaaactttctaaaacagatctttttttagaacaaactgaggctacagcctcagattagaaatttattaagcaagttgagagtacagcaagtcttacagggagacccctgacagatggccaaattacattttaaccctgaaatatgcaaggaaggacctagaaagaaacagaaaaagcaatcgggtccttctctttgccatgtccacaacaacgaaggccagatcgacgcattgaacgacgacaggagctgataatccatggctagctgcatataatgatgcctggatgtgaacccaaaaggggcctctctatggaggttgaagcatctaaggcaaacggagaaacacatcagccgcaccttgtaaagctaacgccaaagacgagtaagaagaccaacatagatgcagaaagctcgccggagaagaagcaagtggccagcgctaccttcttttgggcaaacccatcgtgctcttagcttcgggcgttaatggtgaacctggaaaatgattgatagggaatcttcaccggagaaaaagccgacgaggacatccatggcagaagcaaccaagacgaaggagccggacgccgacgaccccttcgagctgtacaaaaagggattaacccaacaacgggagatacccgagaagtctaaacctaagcttactagtgaaggaaggaactag</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0318500, RefSeq:Os06g0318500