Os06g0318600

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Revision as of 09:16, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0318600| Description = Peptidase S41A, C-terminal protease family protein| Version = NM_001064039.1 GI:115467809 GeneID:4340883| Length = 4...")
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Gene Name

Os06g0318600

Description

Peptidase S41A, C-terminal protease family protein

Version

NM_001064039.1 GI:115467809 GeneID:4340883

Length

4181 bp

Definition

Oryza sativa Japonica Group Os06g0318600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:12413954..12418134

Sequence Coding Region

12414108..12414290,12414395..12414476,12414601..12414731,12414830..12414916,12414998..12415076
,12415724..12415812,12415969..12416010,12416234..12416353,12416852..12416938
,12417023..12417172,12417270..12417373,12417493..12417745

Expression

GEO Profiles:Os06g0318600

Genome Context

<gbrowseImage1> name=NC_008399:12413954..12418134 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:12413954..12418134 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccgacggctgcgtcggagcgcgacggcggcggccgtgccgcgctgggcaaggcggcagcggggctcgccgcggcggccgtggtgtcgctgaccgggctcgccgcggagcccctctcgccgccgccgccggcgcgggccgagtcgctcaccgtcgcgttccctgtctccaaggcccgcgaggtgaaccgggtgcagaggacgctggtggaggcgtgggggctgatccgtgagaccttcgtggatcccaccttcaatcaccaagattgggacatgagactgcagcagaccatggtggagatgttcccgctgaaatcggaggatgccgcctatggtaagatcagcgggatgctgtccacactcggcgatccgttcaccaagatcatcagccccaaggaatatcagagtttcaggattggaagcgatgggagtgtccaaggggttggggtgttcataaacaaggagcctagctctggacgcttgcttgttatggactgcattgaaggtggcccagcagatcgagcaggcctgcatggaggcgatgaactagttgagatcgatgggaagagtgtttctgggttggatggagaagctgcagctcagagacttagaggtcgtgttggaacaactgtgaaagtgaaagtgttggatggcactgaaaacgaaaggaatggtaggataagacaaaaggaggtccagctatctcgtgaggttatcaatctttcacctctatcaacagcaattatctctcataggtcggacgatggccgtgagtgcaaaactgggtatgttaggctagctgcattctctcagactgctgcagctgaaatggaaagtgccattaagaagatggaggatgagggtgtccagtcatatattttagatctgcgaaataatcctggtggtctagtaaaagcaggtcttgacgtggctcaaatgtggttggatggaaatgaaactcttgtcaacactgttgaccgtgagggaaatgtcctaccaataaatatggcccggggccattctttaacacatgatccccttgtcgtacttgtcaatgaaggaagtgcaagtgcaagtgaaatcttggcaggagcattacatgacaatggtcgtgctattttggtcggccacagaacttttggaaaaggaaaaatacagagtgtgactgaattggatgatggatctgctctgtttatcacggtcgcaaaatatctctctccagcactgcatgaaatcgaccaagtaggcatccaacctgacatacaatgcacccctgaaatgttatctttgccaagagcaccttcgctaaaagaggacgacaaagccacaaatctggagatggattcatgtatcatggtggcagagcaagcattggaaattgagaaatcaaagggatctgcttcgtag</cdnaseq>

Protein Sequence

<aaseq>MPTAASERDGGGRAALGKAAAGLAAAAVVSLTGLAAEPLSPPPP ARAESLTVAFPVSKAREVNRVQRTLVEAWGLIRETFVDPTFNHQDWDMRLQQTMVEMF PLKSEDAAYGKISGMLSTLGDPFTKIISPKEYQSFRIGSDGSVQGVGVFINKEPSSGR LLVMDCIEGGPADRAGLHGGDELVEIDGKSVSGLDGEAAAQRLRGRVGTTVKVKVLDG TENERNGRIRQKEVQLSREVINLSPLSTAIISHRSDDGRECKTGYVRLAAFSQTAAAE MESAIKKMEDEGVQSYILDLRNNPGGLVKAGLDVAQMWLDGNETLVNTVDREGNVLPI NMARGHSLTHDPLVVLVNEGSASASEILAGALHDNGRAILVGHRTFGKGKIQSVTELD DGSALFITVAKYLSPALHEIDQVGIQPDIQCTPEMLSLPRAPSLKEDDKATNLEMDSC IMVAEQALEIEKSKGSAS</aaseq>

Gene Sequence

<dnaseqindica>155..337#442..523#648..778#877..963#1045..1123#1771..1859#2016..2057#2281..2400#2899..2985#3070..3219#3317..3420#3540..3792#ggagtgctcgctgcccgccgcccgggccccgcgcccactgccccgccgcctcccgccgctccccggcggcaggccggctcttggcgccgccgggaggagcggcagccggctccgggtgcggtcggagcggacgaggaggagggacagcccgacgatgccgacggctgcgtcggagcgcgacggcggcggccgtgccgcgctgggcaaggcggcagcggggctcgccgcggcggccgtggtgtcgctgaccgggctcgccgcggagcccctctcgccgccgccgccggcgcgggccgagtcgctcaccgtcgcgttccctgtctccaaggcccgcgaggtgggtgggtcccgactcccggggccgcggccgccgtgttgttcatggtgattttgtttttttctcttccacctcgtatgaatctctcttcctgttcttcgcaggtgaaccgggtgcagaggacgctggtggaggcgtgggggctgatccgtgagaccttcgtggatcccaccttcaatcaccaaggtacacacaatctgggacgagttgttttgaatccattcataaaattctaatttggggggaaatgattttgaaatgcagtgaaatttgctaacttacttacccctcaatatgtgagattatgcagattgggacatgagactgcagcagaccatggtggagatgttcccgctgaaatcggaggatgccgcctatggtaagatcagcgggatgctgtccacactcggcgatccgttcaccaagatcatcagccccaaggtgtgtgtatgcctgaggattgtgtcattctgccgggatggcgcatacgaacccaatctgcgtgtgcgctgatgtatacttggtgagagctgttgcaggaatatcagagtttcaggattggaagcgatgggagtgtccaaggggttggggtgttcataaacaaggagcctagctctggacgcttggtaagttagaaattcgctgtcaaataggcaatcatataaggtagtgtcactattgtttatatagctccatgactcttccagcttgttatggactgcattgaaggtggcccagcagatcgagcaggcctgcatggaggcgatgaactagttgagatcgatggtattttactcgttttctgttgtaatattatgtctttgtgaaatatacggtgcaaacgttacggtcttcttatgaattcaactttatctaaagcacacctgtagtgtaaccttttgttttacctgtttgctgcacaacaattttcagcattagtgcatttgtccccaacagaagttctttgggggctaccgcacgaatttaagagcttttctgcggtccttgaatgatactgcaccttttagttttcttttgtacttctttaatactaggaaaagcgatggctcttcgaaaattgagaaggaacttcaaaatttaaaggtcatgaaaagctagtcagctagacttcaaggtttttttctattccctttgtatcagccaacgtttctgaagctaacagaggtgtgatatggacattggacaagccatatgatccaaatgtgtgcttcataaaatttgaagccacaaccaagaatctgtttaaaaattatcacaagcaagttccccttattctatcataactgatagtgtgtaaactttgcatcattgaatcttcatgagctcttcttccgtctttggaaaatgaagtcattgaggaatcagatttcatgcccaagaggcattgatcatcgtatgttctgtttgtgtagggaagagtgtttctgggttggatggagaagctgcagctcagagacttagaggtcgtgttggaacaactgtgaaagtgaaagtgttggatgtatgcactcatcctctgcttcaatttgaagtattatttagagtttttgacatattacaattacaaccccgtgattttattttgtcattcaaaagaaaacatgttcatatccttttattgtattttcttttctaactgacaccacaatatctccagggcactgaaaacgaaaggaatggtaggataagacaaaaggaggtacaatttttctctgaataacatgcaatgccaaccttttccctctatgctgcttggagagtaatgtctaacttatgtctgtctgatttgaataagcttgttacattcggttaaatgcctaaaaagcataatggttcacattaaccagaaggagaattgttgtcctcttaagaatatgatcttctttgtatctaatgacaactacaacttttcttttcaaaaggtccagctatctcgtgaggttatcaatctttcacctctatcaacagcaattatctctcataggtcggacgatggccgtgagtgcaaaactgggtatgttaggctagctgcattctctcaggtaaataccagtattttatatgttttggttctcaattttgcaggcgagtttcatggtactaagaaaagttggaataattgatctcagtaacaaactgtgttattcaatattgctttctgtacgaattgattaaattgaatgtttacaagtattttgaggattccagcattcagtaatactgaaaatggaagaatattctaagtgaagatatttcctgttcaatattgtttttaccaaaggatcggccatctaaataatttgatcgtttaccatgtgtccatatacaactgcaatatactgctaaaaccaccaagagcacaaagcaataatatttcaacttcagatttcaaggtaggattgaaaaaactgcctaattttccctcgaataaatttgcctacttgctttttcttgtttcaaagaaggtgaaaaattatcgatataacacgtatgagttattttggttcttcatatcattctcctttctcctttcaaaccagactgctgcagctgaaatggaaagtgccattaagaagatggaggatgagggtgtccagtcatatattttagatctgcgaaataatcctgtcagtgtacttttctgacaattggtctgtataacttcaacaaaaaaaatattttcttgtagtgatcttgttattttgctacagggtggtctagtaaaagcaggtcttgacgtggctcaaatgtggttggatggaaatgaaactcttgtcaacactgttgaccgtgagggaaatgtcctaccaataaatatggcccggggccattctttaacacatgatccccttgtcgtacttgtgagtctcaactctacatctactatgtgcttgattttgattctttataggtacaatttttcctagacaatcataattatgttgtatgcacatataggtcaatgaaggaagtgcaagtgcaagtgaaatcttggcaggagcattacatgacaatggtcgtgctattttggtcggccacagaacttttggaaaaggaaaaatacaggcatggacaatttctctatacgcacattctgctttttggtgtaaaatgcttgactttttgcatgcttctgaaatatttaaattagtactaaatatgatccccaatattccctggaacagagtgtgactgaattggatgatggatctgctctgtttatcacggtcgcaaaatatctctctccagcactgcatgaaatcgaccaagtaggcatccaacctgacatacaatgcacccctgaaatgttatctttgccaagagcaccttcgctaaaagaggacgacaaagccacaaatctggagatggattcatgtatcatggtggcagagcaagcattggaaattgagaaatcaaagggatctgcttcgtaggtacttctgtaagccagaatcctttgtatgtccacatttagttggtcaggttcatagtggcatctgcagatgaaattcagcatagctccatgtataatattgtaatctaccgtaggttgtatagttagtataggctgtaatgataatatatataggctgataactgtgatgttagattgtaggcaaagaagcaccagaaattagttatctcgtcttcaggggccaaatgcccttgtcattgattcgagatgtgtcaataggaatttgtaattgtcacttgttaatcattgcatattgtctaccaatgccagtacaacatattgcttcaacagttaattgtaagtgagattcctcaaaaaggcactagtcattacatgcatgagatgatc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0318600, RefSeq:Os06g0318600