Os06g0318700

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Revision as of 09:16, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0318700| Description = Zinc finger, CCCH-type domain containing protein| Version = NM_001064040.1 GI:115467811 GeneID:4340884| Length = 570...")
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Gene Name

Os06g0318700

Description

Zinc finger, CCCH-type domain containing protein

Version

NM_001064040.1 GI:115467811 GeneID:4340884

Length

5701 bp

Definition

Oryza sativa Japonica Group Os06g0318700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:12420404..12426104

Sequence Coding Region

12420626..12420639,12421914..12422001,12422100..12422911,12423145..12423214,12424673..12424761
,12424837..12424870

Expression

GEO Profiles:Os06g0318700

Genome Context

<gbrowseImage1> name=NC_008399:12420404..12426104 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:12420404..12426104 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgaccaagagggttctttgcaagttcttcatgcatggagcttgcttgaaaggagagtactgtgagttctcccatgattggaatgatcaaccaaacaatgtttgcacgttctaccagaaaggttcatgctcgtatggtagccgttgccgatatgaccatgtcaaagtttctcgtaaccccacagtggctccaccaccaagctcaagtactacaacacgtgcatctagttctcttcagcctttgagtttcgggcgccctcaccatgtggggtaccaagcagattcaagcaacccaaggcaacagatatctatggatgtgctggcacattctggaagtaagcctgtatggagaaatgattttcaacatgaaagtgtacttgaggatgggattgactggtcaataagtccaactgtgcaaaaccagacaaccttgagtcctgctgatctgccaatctgttcttttgctgctggtggtaattgtccttatggggaagagtgccctcagatgcatggagatctgtgcacaacctgtgggaaaatgtgcttacatccttatcgtcctgatgagagggaggaacataccaagctatgtgagaaaaaccacaagcgtcttgagtctttgaaacgtagccaagagatagaatgcagtgtctgcctggaccgtgtgctctcaaagcctactgctgctgaaaggaagtttggactcttatctgagtgtgatcatcccttctgtatttcatgtattagaaattggcgtaacaattctcctacgtctggaatggatgtgaactcagcactgagggcttgtccaatatgtcgcaaactttcatactatgtcattccaagtgttctttggtacttttcgaaggaggaaaagctggagattattgacaactataaagccaaactcaagtctattgactgcaagtacttcgattttggaactggtacttgtccctttgggtcaagctgtttctacaagcatgcctacagagacggacgcttggaagaggtcatactgcgacatcttgatgctgacgatggaagtacagtgattgccaaaaatattaggttgtcggacttcctcagtcggttacatctttag</cdnaseq>

Protein Sequence

<aaseq>MSTKRVLCKFFMHGACLKGEYCEFSHDWNDQPNNVCTFYQKGSC SYGSRCRYDHVKVSRNPTVAPPPSSSTTTRASSSLQPLSFGRPHHVGYQADSSNPRQQ ISMDVLAHSGSKPVWRNDFQHESVLEDGIDWSISPTVQNQTTLSPADLPICSFAAGGN CPYGEECPQMHGDLCTTCGKMCLHPYRPDEREEHTKLCEKNHKRLESLKRSQEIECSV CLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRNNSPTSGMDVNSALRACPICRKL SYYVIPSVLWYFSKEEKLEIIDNYKAKLKSIDCKYFDFGTGTCPFGSSCFYKHAYRDG RLEEVILRHLDADDGSTVIAKNIRLSDFLSRLHL</aaseq>

Gene Sequence

<dnaseqindica>223..236#1511..1598#1697..2508#2742..2811#4270..4358#4434..4467#aggggtgggagacgcatgcgacgcgggcggagaggagacacgacccacccccgccaccgcccggaggagccacgagcgagcaagccctagcccccgggcgcgagggcggcggccgctgctgcgtcgaccgtctctctctcgtgctccggcgctgctcgtcgtctccttggccgaatccaatccgggaggtgcgggggccgttccgatcgagtcggtcctgccatgtcgaccaagaggtaatctcgattcgattcgattcctgttgggtccgctgttttttggacgatttggagccaaagttcggtgagaggcctggcgtgtgagccacgagcttttcaattttgtttttgtgcggggcggtggtggagccgcgtgtgggattcgggcgcggtggtggtgggtttgagcttgcctaagacctagggttaacctcctccggtgatttggattttgctgaagggcagaatggtggtaaggcgggctttgagctaacgcgctgctcgttttggggcaatttgggcatagggtgtagcttagttgatgtacgctaatctgccacattagctgtaatttttcgctttcgtggagtttcactatcttcgtaatttagcatggaggaagaatccggatggcggttcagttgcttttgcgcttccattacctctggttgcttcgagtcaaatatgttgcgtttgcgcctccattaactctggttgcttagccaaatgtgttatacctgctaaacgcgttgaaggcccaaacgtcgccctccttttagggctttaggtatggtttggattatgaatttgtgatgtgtccgcgtttcgtttgattgttgtgctggtaggttgaataaggggagtgctggagtggcttgtgtttacttcgcttttctgcatattttggttctccgcactttacaggtcaaatgagagtatcaattttgactctggtgccccattttatgccagcaactgataagcacactggtttggcagcgccttagggtggtccttgacttgcctgttttactacgaattttgaatattacagcatcgtgtaaatgaaagtagttagattgggctcagtttaatggtggcatatatgctgcttgttcaattctataaacacaacaattgcgctaggggatctggtctgtggatttcaacaaaggttatatattcgagttgcttaaagctctacattatacgaaagaattagaactactgctattgttgatatataagatgttaaaagtattgaagtaagcaaagcaagatgctcaatagtaacctcattagtatgagatgcaatcccttcagactggtcatttaatttggttgccctggcatcagtcctaagatgattgttttcacatttgatttgcttatggaaaggctccacaaaaacttgttatgttatcctgattcagatcattcccttcctgggattgaacggaaagttctggtagtttgcttacagttcttttggttatgttttgatctatcagggttctttgcaagttcttcatgcatggagcttgcttgaaaggagagtactgtgagttctcccatgattggaatgatcaaccaaacaatgtaatgtattagtaaatgattgatgtgctctgatttcattgccatacttaacagtgcaaatcttctactgttccttactttgattcttacttgctcaggtttgcacgttctaccagaaaggttcatgctcgtatggtagccgttgccgatatgaccatgtcaaagtttctcgtaaccccacagtggctccaccaccaagctcaagtactacaacacgtgcatctagttctcttcagcctttgagtttcgggcgccctcaccatgtggggtaccaagcagattcaagcaacccaaggcaacagatatctatggatgtgctggcacattctggaagtaagcctgtatggagaaatgattttcaacatgaaagtgtacttgaggatgggattgactggtcaataagtccaactgtgcaaaaccagacaaccttgagtcctgctgatctgccaatctgttcttttgctgctggtggtaattgtccttatggggaagagtgccctcagatgcatggagatctgtgcacaacctgtgggaaaatgtgcttacatccttatcgtcctgatgagagggaggaacataccaagctatgtgagaaaaaccacaagcgtcttgagtctttgaaacgtagccaagagatagaatgcagtgtctgcctggaccgtgtgctctcaaagcctactgctgctgaaaggaagtttggactcttatctgagtgtgatcatcccttctgtatttcatgtattagaaattggcgtaacaattctcctacgtctggaatggatgtgaactcagcactgagggcttgtccaatatgtcgcaaactttcatactatgtcattccaagtgttctttggtacttttcgaaggaggaaaagctggagattattgacaactataaagccaaactcaagtaagtttgacaatttttatatcatttttttctgtggcatgttctcttatgtgcaagattgttggcatattctttataatttattgaatgagcatagtcatcaatttatttgaaaatgacatttcttatgcatgcccttttctgaaatatccaagctgatatatttcgtgaggagtgatttatgtttaatactattatgtccctgaatattcgaggaatgtttactattgcaggtctattgactgcaagtacttcgattttggaactggtacttgtccctttgggtcaagctgtttctacaaggtagaaagctatatctttacatgctataaacatgtgaattcagtgctactaatgtacttttgtggcttgtcatcaacataaatctcactagctatccagataactagagagccctataaacaatcgcccgcctgtctattggcatttggcactaagtcaagcacctggtctaaacaaatcagttgcttggcacctttttactcaatcagttgctctgatggaaactgcccaacttatgttcttacatcagattacaccatctgcaaatccctaaagaccttttgtgttactggaatttatgagtgtctgcaagcgtggcttaatattttctctctttttttttcttttaaatgctgctccttgggcatcctaggtcctaccttcaccacagtccacagcctttatgtcggtttaaggagttgccaaaaatatgatgatgtctatactatacaatacaattaactcaagacaagacttattagtaatgcttatggaccctgttagataattcttgaaaaataatggtataatttttcccctcaatatttggtgttcattgctagcttgttaccatctagtgaatttttaaccaatagtgtggactccaacgtttttttaatcaatgattatatttacatagtgtaattttacattagctcaaatggttcaagttgattagcagtatctatcacactctggcaagtgtaattggtaggtatgctaggtaggcctcttgggctcagaggtttgtgtccaggaggtgctgtgattagttggtgtgcagtttttagcattaatggatgtagaaagaatcgagatgcaaaacagagaaactggacgaggcattatgtttatagagaatgagactggcgccttttttatacagagaagtccctgacagcactagattgcaccatataaagtgtcctaatattacattgaagtatttcactgcttaataaatcataacattgtactaacatagtgcacttcctaataatccatatcaggagaaaaccaactaaatcagttcctggcaaaaatcatatcagctaaacatatatagcatcttaatgttgtgttcgtcttgaactctgtcgcacacgttgcatctcgtcatgtttgcccagctgctgccataccactgtcgctccttagtaatttctccacatgagaacatacttaaaagaaccctagacaacgcttatgttgtggcttttccacttttattctacattcaagcttgtatcttgtatgtgattttcatactggtccagtatgagtagagtgtattgtgcattctgttaatatttggggaaactgatctcttgttctctctttttagtttttactatcaccttgttgaatagcattaggtactattgctgtaaactgtgcactttactggacagtcttttcatgtcattgaaactaaacattgtacctcatgtttgacagcatgcctacagagacggacgcttggaagaggtcatactgcgacatcttgatgctgacgatggaagtacagtgattgccaaaaatattaggtatgtgctctcttttaggtgtctatttaatatattttctcattttaatgtattatcatcctttacgtgttccaggttgtcggacttcctcagtcggttacatctttagggaccagtgactgtatatatgtcaaatgtaagatttatctttttggtaatcaatatagaatcaactcaatgttgcattgttgctcttatttttcgccagctcacttaaaaagcattgtgcatctggaaatggtgctacatgtcatgtatttgctgttgttggagatggtttctatgatgtctccctatagatcaaaattataacatttatggtcttttaagatgtgcattgttcaaagtttcattctggtggatttaaaatataacagatcctgcaattagatttcttgtcaacatttcattagtttttcgtccgttatgctattcattttattgttatatccctatcaaatctttttctcttcatattttgaccaagtgatgaagtggaccatctgtatccaggaattctggggtttcgctgtctaccaaatattagtattacttggatactgtttaaacccagggtcagggagcatcttgtagtggtcgtacaaagtcagtccttgtactaaaaactgtcgttctttttcctgccatgcataacttgtcactaactgcctaggatccttaccaaagatgtgtatgatcttaagctaacaagagtcgcattcttcaatgcagaattattgaagttcgcagcaggcctcctggaggaagcaatcgtgatctgaggacaaggaaaacagaagttttgtcgcaaatacgctcaatagtccaaacgttagaactaaactgttgaaaaactttgccatatccactcatcttgcctcctggccagcagtgattcagtaaacattcactggccatcgtgccaaagcacaggtgtataatactattccttcctcaatgctctctactgagggaaggctgcctgcacccaaccacaggccacctgatgccgtgtgattgtacttgtatgaaaagaaggaactagaaaaaaagaaagagaggatgaaacaaagattactcttcagactacacattgatgaatccgcattaggacgaggtccagatgcttaaagccgtttggttgtcttggtctgagggagagaaggaaaacaagaaaggaaacaaatcacattctttataaacatcagtgttgaatgtggcatgtgctaatgtgctatatatatctgatgttgatatgccctgtacatgttcctggaacaggttggcgcttttgctcaggaaacaggaacgtctgcctatttgtggtggctttcttctgtgtg</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0318700, RefSeq:Os06g0318700