Os06g0320700

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Revision as of 09:16, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0320700| Description = Protein of unknown function UPF0061 family protein| Version = NM_001064049.1 GI:115467829 GeneID:4340893| Length = 5...")
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Gene Name

Os06g0320700

Description

Protein of unknown function UPF0061 family protein

Version

NM_001064049.1 GI:115467829 GeneID:4340893

Length

5803 bp

Definition

Oryza sativa Japonica Group Os06g0320700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:12524787..12530589

Sequence Coding Region

12525139..12525393,12525917..12526190,12526276..12526582,12526671..12526918,12528385..12528684
,12528768..12528824,12530035..12530144,12530257..12530586

Expression

GEO Profiles:Os06g0320700

Genome Context

<gbrowseImage1> name=NC_008399:12524787..12530589 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:12524787..12530589 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcccccacacctctcctcctccctcttctcctcctcccctctccccaccgccctcctctcctccctcacccgccgcgcccgcgccctcctccccctccccctccccctccccgccgcctccacccgccgccgcctccctctccgccgcggcccgctgctgacgcgtggcatcatggcctccgccgccgcagaggcaccggccccgtcgccctcgcccaccgccgccgcgaacagccgaccgcggcgggtgctggaggagctctcctgggacgactccttcgtccgcgagctccccggcgacccccgatccgacgccatcccccgcgaggtgcttcacgcttgttacacaaaggtgtcaccctcagcgcccgtggacaaccctaagctggtggcgtggtcccagtccgtggctgacatcctcgatctggatcacaaagagtttgaaagacctgattttcctcagctgttctcaggagcaaatcctttggttgggagttcaccttatgcccagtgctatggtggacaccagtttggttcatgggctggtcagttgggcgacggacgagcaataactcttggagaggttatcaactctcgaggtgagagatgggagttgcagctcaagggctgtggaaagactccatacagccgatttgcagatggccttgctgtcctccgcagcagcattcgtgaattcctatgcagtgaagctatgcatggcctaggcatccctacaactcgtgctctttgtctagttgaaactggcaaatctgttgttcgagatatgttctatgatggcaattcaaaggaggaaccaggtgccattgtatgccgtgtagcaccatcctttttgcgttttggttcatatcagatacatgctacaagggacaaagaggaccttgaaattgttcgtcatttggcagactacacaatacgtcatcactacccacatctcgaaaatattaaaaagagtgaaggtttatcttttgaagcagctataggggactctccagcgatagatcttacttcgaacaaatatgcagcctgggcagttgaggttgcagagcgcactgctttcttgatagcaaggtggcaaggtgttggttttacccatggtgtgctcaacacggataatatgagtgtattaggactaactattgactatggaccctttggctttttggatgcttttgatcctagctatactccaaatacaacagacctccctgggaagagatactgttttgcaaatcaacctgatgttggcttgtggaatattgctcagtttacctcaccattgacagctgccgaacttatcagcaaagatgaggcaaattatgtgatggagaggtacgggacaaagtttatggatgagtatcaatccataatgaccaggaaacttggtctacccaagtataataagcagctaataggcaagctgcttaacaacctggctgttgataaggtcgattatacaaattttttccgtcttctttcaaatgtcaaagcagaccataacattccagagaaggagctacttgttccacttaaagctgcactcctagatattggaccagaaagaaaggaagcatggattagttgggtacaaacttacattgaagagttggtttcaagtggcgttcctgacgaagaaaggaaagctgccatgaactctgttaatccaaagtatgttcttcggaactatctctgccagactgcaattgacgcagctgagcaaggtgattatgatgaagttcgtcggttattgaaagttatggaacatccatatgatgagcagccaggaatggagaaatatgcccggttgccaccagcctgggcatacaggccaggagtgtgcatgctgtcctgctcatcatga</cdnaseq>

Protein Sequence

<aaseq>MPPHLSSSLFSSSPLPTALLSSLTRRARALLPLPLPLPAASTRR RLPLRRGPLLTRGIMASAAAEAPAPSPSPTAAANSRPRRVLEELSWDDSFVRELPGDP RSDAIPREVLHACYTKVSPSAPVDNPKLVAWSQSVADILDLDHKEFERPDFPQLFSGA NPLVGSSPYAQCYGGHQFGSWAGQLGDGRAITLGEVINSRGERWELQLKGCGKTPYSR FADGLAVLRSSIREFLCSEAMHGLGIPTTRALCLVETGKSVVRDMFYDGNSKEEPGAI VCRVAPSFLRFGSYQIHATRDKEDLEIVRHLADYTIRHHYPHLENIKKSEGLSFEAAI GDSPAIDLTSNKYAAWAVEVAERTAFLIARWQGVGFTHGVLNTDNMSVLGLTIDYGPF GFLDAFDPSYTPNTTDLPGKRYCFANQPDVGLWNIAQFTSPLTAAELISKDEANYVME RYGTKFMDEYQSIMTRKLGLPKYNKQLIGKLLNNLAVDKVDYTNFFRLLSNVKADHNI PEKELLVPLKAALLDIGPERKEAWISWVQTYIEELVSSGVPDEERKAAMNSVNPKYVL RNYLCQTAIDAAEQGDYDEVRRLLKVMEHPYDEQPGMEKYARLPPAWAYRPGVCMLSC SS</aaseq>

Gene Sequence

<dnaseqindica>5197..5451#4400..4673#4008..4314#3672..3919#1906..2205#1766..1822#446..555#4..333#gccatgcccccacacctctcctcctccctcttctcctcctcccctctccccaccgccctcctctcctccctcacccgccgcgcccgcgccctcctccccctccccctccccctccccgccgcctccacccgccgccgcctccctctccgccgcggcccgctgctgacgcgtggcatcatggcctccgccgccgcagaggcaccggccccgtcgccctcgcccaccgccgccgcgaacagccgaccgcggcgggtgctggaggagctctcctgggacgactccttcgtccgcgagctccccggcgacccccgatccgacgccatcccccgcgaggtgcgtgcgtcgctggggtttactccccgcttcgtggctcgtctcgtctagtgcccttcgctttgcttgcttctgcttcacccggtgattttgtgctgcttgggtgacgcaggtgcttcacgcttgttacacaaaggtgtcaccctcagcgcccgtggacaaccctaagctggtggcgtggtcccagtccgtggctgacatcctcgatctggatcacaaagagtgagcccccagaattattctagtagctgttatgcatttatgcttgccgtccctagattattttggttttggggggtatccctgatgtctgtggataaatcagatgagggttggacaggctgcctttgaattagcatagctcgcttttttcagatgcagtaagagatactgttttattcgaaataattagctttccgtgattggcaatgcgttggagcatatacctcgatcgaaaatagtccgttatggatagagatgtaaatgagaagtggaaatttgagtgtgtataacctgcaaaaatattacaaaacctatcatatcacccttggtagcacatgagctcgaactggtccatacagcacctctaacttatgcattcactgttcgaagatttagtgtcattaccttttgcccaccagggactcttatcgctaacattttaatttatgcccacaacactgacaagtaaggtgaaaattttattcatttatgtttttgctgatgtgctgcagtgtgggtgaaagtggtgttgcctagagttaatgttaccgaaactttccaataaaaaatacaccttgtctttaagtttttgaagaaagttagcacagagaaaaggattactaatcagatgttcaaaattcgaacaccagagcgaagtattacatggtacacagacatggcatcatgacactcgtgtcagaatcctaattggagtggtgtgtccgatgcggcataaaaagtgggcacacataatacaactcagaatcggactggagtggtgttggaatacgacttggacctgggtgcctgattcggcaagaaattatttgcccatgcaatattctttttctgtgttgcccaactcaaacttcttgttttttaatttgccacatgataggccaagtgtgctgtctggcatgttatcagcttcttcttttggctactgaccactgaaactgtttatgacaagttggttttgctttttatacagatttttgtactggttgatttgttacaagaatactgtatttcttaagttgcttttgatcttgatatgatctgttaatgaattaagctgagtaatgcatttttacctcctaccaactctcattttctccatttttgtgtagaagcatgttcattgttctcttccctgttactgtcatccattccttttaatcattttgtatccttgttggtctactttcaggtttgaaagacctgattttcctcagctgttctcaggagcaaatcctttggttgggaggtgcgtaatactaatgcttaacattctcttcatatgattgcacaagaaaagcaacacaccttctgatgaacaactacctgcagttcaccttatgcccagtgctatggtggacaccagtttggttcatgggctggtcagttgggcgacggacgagcaataactcttggagaggttatcaactctcgaggtgagagatgggagttgcagctcaagggctgtggaaagactccatacagccgatttgcagatggccttgctgtcctccgcagcagcattcgtgaattcctatgcagtgaagctatgcatggcctaggcatccctacaactcgtgctctttgtctagttgaaactggcaaatctgttgttcgagatatgttctatgagtatgtcatgacatctctgttttctgaactacatcatgctcgatctatttttctttctaaatttactttagaaacagatcgttccatatccgaagttgtatatctcattgttatgagatatttcttccttctatctaacatggtcacaaagattaaaaagagaacaatagatgatatgagtctctctatagaaagaatgatagatgatcaataatattattatttaaagctaaatatgaagctgccaataggcaaaaataataatggtagcgtgtttctgaaaacgtggtactattttaaacttttaactgtatgtttatggagaacatatcctatccgcacaagcttcccgtgcacattaacagccaaatatcacggaaaattctagaaaaaatatgacatgtactcttaatagtattacacatatctacaaagtcttatattcaaattcgctatattttagctgtaacaaaaaaaagtgaaaattttgacagttttaagattaaaaatctgtcataatttcgtcttttcgttacgattaaaatataatgatttgaacatgaaatgtcacagataggtgtaatactatttaaagtatgtgttcaattttttctagaaattttttgtgacatttgctagttggtgtgcacgggaagcttgtatgcataggatatgttcccatgtgtatgttgcttgagccacatatatataccagcataagctgcagtgggcctgctactgaacaagtctgttagcttctttggtgatggttgtgctggggatgtagaaattaccctgaatggcacgaatcatgtggtgatggctcattttcgtttttagcacatgtgagtttgagttttttttttccatttctttagtgcatgactgtatgtggaaatcatatttggcatattccagtatcattagtctacataagtaaattgtctggttttcatgatatatataatagcacttgtgagcactaaatgttgaaatgattaccccttgccactatgtcaactatgattcttggctgcaatattacgcaaccgagttactgcagctgctaactgcttttgtccacaagtgtgtgtagttacataacaaagcagcagcgaccactgtaatgcagcatgtagcagctgctctaagattcttcaggtttccttgggccatataacacgtccttcttttaagaaagtgcataattttgcccccccccccccaattttttttatttttattaactttgtattgaatactatcatacaaactccattgtccctttcatttacctactgttgattaacattaccttagcggctttttcataaagaacactggttgccaggacctttccccttttttttttccagaaccttccttttgaaggttttagtaattatgttgtatctattagcatttgtttatgatgataaatctaatggtttgtctttatatatcagtggcaattcaaaggaggaaccaggtgccattgtatgccgtgtagcaccatcctttttgcgttttggttcatatcagatacatgctacaagggacaaagaggaccttgaaattgttcgtcatttggcagactacacaatacgtcatcactacccacatctcgaaaatattaaaaagagtgaaggtttatcttttgaagcagctataggggactctccagcgatagatcttacttcgaacaaatatgcaggtaaatatcattatgtgctattttctttcagtctactcattgatatttaaaaggctaagtattctccccttttaatccttggttacagcctgggcagttgaggttgcagagcgcactgctttcttgatagcaaggtggcaaggtgttggttttacccatggtgtgctcaacacggataatatgagtgtattaggactaactattgactatggaccctttggctttttggatgcttttgatcctagctatactccaaatacaacagacctccctgggaagagatactgttttgcaaatcaacctgatgttggcttgtggaatattgctcagtttacctcaccattgacagctgccgaacttatcagcaaagatgaggcaaattatgtgatggagaggtgcattgttttgtccaatatttactgattattacccatgattatgtccagatgtatcatacattttgatttctgtgtactgcaggtacgggacaaagtttatggatgagtatcaatccataatgaccaggaaacttggtctacccaagtataataagcagctaataggcaagctgcttaacaacctggctgttgataaggtcgattatacaaattttttccgtcttctttcaaatgtcaaagcagaccataacattccagagaaggagctacttgttccacttaaagctgcactcctagatattggaccagaaagaaaggaagcatggattagttgggtacaaacttacattgaagaggtaggctttacttttggtaatcgtttattcagtttgtttctctaattctattttataagtgcactttcaaacccaacataatggtatagcacatcaatatattatcaatgatttttgtcttgcttgttggtgtttgggtatgtgtttgtcaacccctgtcattttgtgaagttggaatagtcatgtgtacaaaagaatgtcacaaggcagaaatgagtggttgtttgctcccgttatatgcttccaaatatttacaatcatttacatattggattatattgttttgaaaattgcatcaactgttggttttggataatatctcattcattgttaatgtatcatcagcatgctaatcaattccctgaattattgacttattctgccaatagccaatatgttggtagatcctctttgcttcattagttcaaacatttatagcgaactacagctttgagaaacgacaagttgtaaagaggctatttggacatccttgatctaatgatatatttttttctttgtgaagttggtttcaagtggcgttcctgacgaagaaaggaaagctgccatgaactctgttaatccaaagtatgttcttcggaactatctctgccagactgcaattgacgcagctgagcaaggtgattatgatgaagttcgtcggttattgaaagttatggaacatccatatgatgagcagccaggaatggagaaatatgcccggttgccaccagcctgggcatacaggccaggagtgtgcatgctgtcctgctcatcatgaaaccaacattccatcacgtcaaatatgcaaacttgttttttttatattatttttttctgtataggaggtttaattttgagctactgctatagtgtctaaagcatcacatgctattttactgccgatgcatatcagaaactggtgttgttaatcttcgagttatcatattgttgacggtagctaagcgttcatagcagttgggaaatagagccaccaaactcatccgattttcttagatatagtgctttgttgttgtgaacagattatattttcgcagatgaacatgatgtgcatttagttttagctgtccatctaattatgtccagcaacatgagaggtgtttatttacttc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0320700, RefSeq:Os06g0320700