Os06g0354500

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Revision as of 09:18, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0354500| Description = Similar to Acyl-coenzyme A oxidase 3, peroxisomal precursor (EC 1.3.3.6) (AOX 3) (Medium-chain acyl-CoA oxidase) (AtCX...")
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Gene Name

Os06g0354500

Description

Similar to Acyl-coenzyme A oxidase 3, peroxisomal precursor (EC 1.3.3.6) (AOX 3) (Medium-chain acyl-CoA oxidase) (AtCX3)

Version

NM_001064126.1 GI:115467983 GeneID:4340986

Length

8799 bp

Definition

Oryza sativa Japonica Group Os06g0354500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:14572153..14580951

Sequence Coding Region

14572399..14572647,14572777..14572878,14572951..14573055,14573142..14573288,14573375..14573494
,14573947..14574082,14574402..14574532,14576058..14576132,14576244..14576343
,14576417..14576589,14576678..14576785,14576878..14576995,14580392..14580885

Expression

GEO Profiles:Os06g0354500

Genome Context

<gbrowseImage1> name=NC_008399:14572153..14580951 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:14572153..14580951 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggatccatcgtaccctccctccgccaccgcccgccgcgccgccgccatcgcccgccacctcgccggcctctcccctcgcgacgccgccgccgttgctgcagcgctggagccctccgcgtgcctgagctacgcgcccccggagtcgtcggagcccgcccctgcgttctcgccgctggagctccgctcgctcctcgacgggcaccacctccgggagcgcgactgggcgttccgcgcgatggaggagagcccgctcttctgccagcgccgcagcggcggaaaggtgttcgtgtctccggactacaacgagggcaaggaggggcagcgggaggccacgatgcggcgggtcggctacctggcgcggcggggcgtgttccggggctggctcacggagccggggcccgacgccgagctccgcaagctcgcgctgctcgagtgcctcggcatgtatgaccactccctcgccatcaagatcggcgtccacttcttcctctggggcagcgcaatcaagtttcttggaacaaagcgccaccatgacaaatggttgtcggacacagaaaattatgttatcaagggttgtttttccatgacagaactgggtcatgggagcaatgtccgaggaattgagacagtggctacttatgatattaaaacaagagagtttgtgataaatactccttgtgaatcagcccagaagtactggattggtggagctgctaatcatgctacacatactatagtctttgcgcagctccatataaatgggagaaatgaaggagtccatgcttttgtagctcagattagggatgaacatgaaaatgttatgcctaatatccagatagctgactgtggccataaaattggattaaatggtgttgataatggacgaatttggtttaacaatatacgtgttcctcgagagaatttgctgaatcttgttgctgatgttttgccggatgggcaatatgttagcacgatagatgaccctgatcagaggtttgcagcatttttatctccacttacacttggtcgagttaatattgcagttaatgcggtttatatttcaaaggttggcgttgcaattgctgtgagatatgctttgtcaaggagagccttttcagttacaccggatggtcctgaaatgctgttacttgattatcccagtcaccagcgacgccttctaccactgctagcaaaagcatgtctgatgagcagtgctggtaattttatgaaaaggatgtatgtgaagaggactcctgaacttaacaaatctatacacatttactctagtgctcttaaagctacacttacctggcagaatatgaccacacttcaggagtgccgtgaagcttgtggtggccaaggtttgaagacagagaatcgcataggaattttcaaagctgaatttgatgtccagtctacatttgagggcgacaataatgttctaatgcagcaggtaagcaaagccctttatgctgaatttttgacagcaaaaaggaagaatcaaccattcaagggattgggcttggaacacttgaatggtccttgccctgttattcctgattatctgacaagtggcacactaagaagctccagtttccagatggacttgctctgcttgagggagcgagatttactgaaacgattcaccacggaggtttctaactatctggcacaaggagaaaacagagagaaggctttgatgctgagctaccaactcgctgaagacttagctagagcatttactgagcgcacaattttgcaaatatttttggaggatgagaagaatattcctactggttctttaaaggatatattgggcttactaaggtctttatatgttatggtttgcatagacgaatctgcatcctttttgagatatggttgcctatcgcgagagaatgtagccgctgctaggaaagaagtgatgacactgtgcagtgaactcaggccccacgcacttgctattgtcagttccttcggaatcccagatgccttccttagcccactcgcttttgactggattgaggcaaatgcacggtcttctgggaatgaatga</cdnaseq>

Protein Sequence

<aaseq>MDPSYPPSATARRAAAIARHLAGLSPRDAAAVAAALEPSACLSY APPESSEPAPAFSPLELRSLLDGHHLRERDWAFRAMEESPLFCQRRSGGKVFVSPDYN EGKEGQREATMRRVGYLARRGVFRGWLTEPGPDAELRKLALLECLGMYDHSLAIKIGV HFFLWGSAIKFLGTKRHHDKWLSDTENYVIKGCFSMTELGHGSNVRGIETVATYDIKT REFVINTPCESAQKYWIGGAANHATHTIVFAQLHINGRNEGVHAFVAQIRDEHENVMP NIQIADCGHKIGLNGVDNGRIWFNNIRVPRENLLNLVADVLPDGQYVSTIDDPDQRFA AFLSPLTLGRVNIAVNAVYISKVGVAIAVRYALSRRAFSVTPDGPEMLLLDYPSHQRR LLPLLAKACLMSSAGNFMKRMYVKRTPELNKSIHIYSSALKATLTWQNMTTLQECREA CGGQGLKTENRIGIFKAEFDVQSTFEGDNNVLMQQVSKALYAEFLTAKRKNQPFKGLG LEHLNGPCPVIPDYLTSGTLRSSSFQMDLLCLRERDLLKRFTTEVSNYLAQGENREKA LMLSYQLAEDLARAFTERTILQIFLEDEKNIPTGSLKDILGLLRSLYVMVCIDESASF LRYGCLSRENVAAARKEVMTLCSELRPHALAIVSSFGIPDAFLSPLAFDWIEANARSS GNE</aaseq>

Gene Sequence

<dnaseqindica>8305..8553#8074..8175#7897..8001#7664..7810#7458..7577#6870..7005#6420..6550#4820..4894#4609..4708#4363..4535#4167..4274#3957..4074#67..560#tccaacttccatcacaatcccaccaaatccttgtcctcacgtcaacgatcgcaagccatagctccgatggatccatcgtaccctccctccgccaccgcccgccgcgccgccgccatcgcccgccacctcgccggcctctcccctcgcgacgccgccgccgttgctgcagcgctggagccctccgcgtgcctgagctacgcgcccccggagtcgtcggagcccgcccctgcgttctcgccgctggagctccgctcgctcctcgacgggcaccacctccgggagcgcgactgggcgttccgcgcgatggaggagagcccgctcttctgccagcgccgcagcggcggaaaggtgttcgtgtctccggactacaacgagggcaaggaggggcagcgggaggccacgatgcggcgggtcggctacctggcgcggcggggcgtgttccggggctggctcacggagccggggcccgacgccgagctccgcaagctcgcgctgctcgagtgcctcggcatgtatgaccactccctcgccatcaagatcggcgtccacttcttcctctggtacgttcccctcgcccccaattttgtctcaaattcgccaattcctagctcacattatattgccaatccccaatttcgcgctcaattcccagttttgagctctgctatggcagtctttctggtgcgatgaatttaggatcagccacggcattgtacgaccaaagacttggcaaaggcttggtttagttcccaactttttctttgaacttctaacttttacatcatatcaaaactttcctatacacataaacttttaacttttttctttaaacttttcaattttaatcaaacttttaattttgacgtgaaactaaacacagctagtctggtcatggtgtccttccgtgtctgcataatactgaacttactgcaagttactagtagcaagtaaattattaggatttctaggtgtgcaagcaatccatgagaaaagtaaacggaagagaaatatttgaggatggatcagatctaaagtttggatccaaacttcagtccttttccatcatattaacctgtcatacacacacaacttttcagtcacatcatctctaatttgaaccaaaattcaaactttgcgctaaactaaacacagctgtagcgcggcagcaggagtggggtcgtttatccgtgagcagaattgcagagtacctgcatcctgcaacacatgcttccatagtggcaacacataccctatccctgtagtctcgaattcgtgtatagcgtgcaggccacaaagtggcaacacacacagctaagcaaccaaccagttataaagcgaaactattataatcaatttaattaaagtcttgtttgatgaggcccaaaccagcccaaggaggatgagccaggaaatcgaactcgtttcatgcttggggagggttttgagacttgagagtaagtggctttgagagattcacatgtccagtacggtagttttcaagtttgttctgtgctcaggccaagcatgtctcacgtgtcagttttttttttctgcgtttcaatatttttcttcgtttgtcgaaggttcttcttaaaaagtatatttttttttgtccatttgcttgagacttgagagcatctcccgattcgatatatgtttgtcaacttcgaagctgctccggtgtctcatctccgctccgcaccgcaacgactccgacggtccgacctcttcttcctcgcttgatctcctctggacaccgaagactccgatggaacccatgtcctcctcgccggccgccagccggcgcgccgcagcgattgcccgccacctcgccggcattccggctgccaaattcgcctccctgctcgagccattctcctgcctgggctacgtgccgccggagtccaatgagcagcccccggcgttcgcgctaggcgacctccggaggctgctcgacgggcacgacctgggcgtgcgggactggatgttccgcgtcatggagcagagcacattgttctgcagccggcacgggggccccggacctgcaggcagggtgttcgcatcgccggacttcaacaaggacaaggaggggctgcgggaggcgaagatgaggcggatcgggtacctggcgcggcgcggcgtattccgtggatggctcacagacacggagggcgacgccgaggccgagctccgcaggatcgcgctcctcgactgcattggcgtctacgatcactcgctcgccatcaagatcggcgtccatttcttcctctggtgattaattcccttgccatctggtgattccgacctttcttccgctcggcccgagcttgcttcattgcttgcgtacataagtttgtcctcttttacacccctgctagctccgagcttgcttgcttacagtacataattttgttctcttttacacttcttctggctccgagcttgcttgcttacttacagtacataatgttgtttcgtttcgcttggttctcttgtaaagtttcatgctttcattagctctgcactacaaagttatttcaatgctcccgttcttttttcctaattctcttaaaatttagaaaatctgtatatacctaatttcttaattgcaccaaaatatggattttctctccgttcagtttgatacggatatagttgactcagcatacaaaactttaggtactgtgattctgggccctaataggataatagtatgatccaagcccgttacatgcgctgttttaaatgggcttatagcgaatacaatggaatcaaatcctgccgtggtccaaggcccattacactccagatcgttactgagttttccccctctccggcgaaatcgcacctcactaggccaagcgactccaccatttgatccgaatgcgctagatccgtttctgctgctgcaaggattcggctgactccggtccggcctgtggcggatcgacctcgccgtcgatgtggatctcggaccccgtaggtgccctccttctttcatctccccggcagttgtcttcttcttatgggattcggttcttctgcaatacgcatacagtcacgaatttggttaagtttctcgttcgttttgttcctgtgtacccactgtcctgtgtgtaagactaaaatgaattgggaagagagagaaagctctctttaaaagcatacttgaagaagagagttggtaaaagaaaaaaagaataggttttgtcttgctttgtcttactttacttcgcagttttattgaatggttttctcattggactatagcaatcgtgttttctttcttggcaacatatgaatgaattgacggtcctcaatggtgttctctgcatgttcccatcaggccatcacagttggcccctttgcaacccaaagtccaatcctatactgtactggaaaattaggtgcaggagtaatagattttgttgttatcttatccactttagctgctgggtgtaattgttagccattgcttgcaggagaatgttttgttctatcttgttaggatctcctatgaaacgaggctttgccaatttaccccgtacattatacgacagtcctctagatgaaggattattatctctattttgtattttgataccaagtgagcaatgagcttctcaactctatctttccatcttcctccatgccatgtaccctttctgtaagcaccacttgttctttaagcaattactgtttatcccattataaaattaggttcgtatgatagcattttcatatttgtagcatacagaactggagagaacatccgcctggaactggtcttaacccttcatggaagttattcaatattttgttgatctccttccatttttcatgtagaaagtgtaacatgttgaattcgaaaaatgaatgattatttgatagaactgatagcattatgtttgttgacaattttctggtattaaacatcatttctttttgcactccaggggcagcgcaatcaagtttcttggaacaaagcgccaccatgacaaatggttgtcggacacagaaaattatgttatcaagggttgtttttccatgacagaactgggtcatgggagcaatgtatgtgatgatattttggtcaaattactgaattgtagttttgttagctgtgttgatgagatttttctttgccttatttgactaatttgaaggtccgaggaattgagacagtggctacttatgatattaaaacaagagagtttgtgataaatactccttgtgaatcagcccagaagtactggattggtggagctgctaatgtatgatgaaatttcacttaaataattgagtacatctatgctgtctatttggttattacttactgttggtgtttgtggccttttacagcatgctacacatactatagtctttgcgcagctccatataaatgggagaaatgaaggagtccatgcttttgtagctcagattagggatgaacatgaaaatgttatgcctaatatccagatagctgactgtggccataaaattggattaaatggtgttgataatggacgaatttggtgagcccttgtacttctgtaaagttttgtcttcctatcacgcacattgtaaattaatttaactgtctgtcaggtttaacaatatacgtgttcctcgagagaatttgctgaatcttgttgctgatgttttgccggatgggcaatatgttagcacgatagatgaccctgatcaggtaatgcgaccttatcctctctctccctcactccctagacgtacacatagataagtagttgctgcattcatttttgtctcattttcaaactgataattttctgttctgcagaggtttgcagcatttttatctccacttacacttggtcgagttaatattgcagttaatgcggtttatatttcaaaggtatgtcatgtgcccttccttttctatatatacatggagattgttcgaatgagttccagagggtatatatatatgtagctcaagattattatagaatttgctcatttagactagctggtaattaagcaaactggaatcagctaagataaacagcacaagcaaagtgaagtatcatctatttgaacaaggacagaccacatctgtgcacttagttagatcagcccaaacaagtttggttggaagtacctttacagccaagaacatttctcgaaacctggaaattataattcagagatttatttggaatttgactgttcatgaactgaaataactaagccaagatggagtatagagaaatctttttaaaatggttgagtttagatcaatcagtgccagtgataaagtaagaatccagttcctaacacgcagaggaatgtgcttttcaatcaaatttttgttcctagatacgttacaataagaggtttttttttcgaacatgcaggagatctgtgcatcatttcattaataataagaagataagcacagggaggggatcaaaaatctccccaccctaaacacttaaaaacagaaaaacaagatcacttaagtcgcaagggccatcgacctacccaatatctcacgaaactttaaagctctggctaagcaccagaatgtgccttcatctgctactgattgtagcaccattgacaccctcggaattgagccattgaaaacacaatcattcctgtgtttccaaatttccctagccaccagaattataagcgagtttagccctttcttcctttctttgttgatgtccttcactgccctagaccaccagcttgagaaatgacatgtgtcaggggtaggggcgaggccagtgaagcgtgaagctactctgtgaaggatcagcgaccaaacctgccagctaaaaacgcaagtgataagaatatgttgcaaagggcaggcaactaggtgtgggaaccctcgcttggacaggcgatcagccatccaacaatggttatttaccacaaaccatagaaaatatttgcactttagcggtgcccaacatttccatacccttctccatggagcaaatctgatagtcccaacaaaaagagtctcatatgctgatttgctagagtaccagatcccgataacctccaacggtgctgattcggtgtatcatgttgcaagtttactgcaagcactaaatcccagatcagaagatactctctaatcactttcacagtgagagctccttttatatctgtgatccatgtttgattacccaatgcttgagccactgtacattgtttgacaaccttcttagcaattagcttgaacaaattaggggtacaaagagataccacattttctattgtaaaatttaatacctgctggtacacgagacactgagaagtacaaattttatagtagaaaatgtggtactcccggtacctcctcaaggaccttaaaacttctaaaataaataagcttgtgtgctctttctctgtgcttacaggttggcgttgcaattgctgtgagatatgctttgtcaaggagagccttttcagttacaccggatggtcctgaaatgctgttacttgattatcccagtcaccagcgacgccttctaccactgctagcaaaagcgtaacctactagctttctctggatttttgtactttgcatgtatttaattttgaagctttttccacagcttggagtttttgcagtagctcattcgttttttttcctcttgctaatctatcatcttgctgaacatttggcatgggagtagatctgatattctagtcatgaaatgccagtatccttataaaaaaatattagcactaaagttgctaatattcccaacatgtaaaaaaacatcactaatgctaagccctttttttcagtgttttcactactacttaatgtcatcatatatgctaaagtatatttccttatgcagatgtctgatgagcagtgctggtaattttatgaaaaggatgtatgtgaagaggactcctgaacttaacaaatctatacacatttactctagtgctcttaaagctacacttacctggcagaatatgaccacacttcaggtattgtcaaaaagcgccaccaagtatttttttctttagagatctatttagttaggaatgttgatacattcggatggacagggattctagtagaattttcttgcttattgtgatagagtctactccctccgttccaaaatataagcatttttagaatagtgctaagtcaaactttttaaattttgactattaatagcaaaaaattagaaaagattaatcatgtaaatttgatgttactatgtttatcattaaatgaactatcataatatgcaactctttttatttaagatattttacttttgtagatattgttagttaaagtagcatctcagagaccgtgtccaggtccaaaaatgcttatattttgggacggagggagtatatcttattattccaaacaagcccttttcttgatcgatatcacattctggatttctttttacatctattaggagtgccgtgaagcttgtggtggccaaggtttgaagacagagaatcgcataggaattttcaaagctgaatttgatgtccagtctacatttgagggcgacaataatgttctaatgcagcaggttattttgcttattgtttgtcatctttgtatttctcccaaaggtattttatgcttagattaattttaactatttaaccttttcaggtaagcaaagccctttatgctgaatttttgacagcaaaaaggaagaatcaaccattcaagggattgggcttggaacacttgaatggtccttgccctgttattcctgattatctgacaagtggcacactaagaagctccagtttccaggtatagaataataacttagtttcttacatttataagatagctgtcatgagacaactctttatgtatgcctttgtgatggtgaatagatggacttgctctgcttgagggagcgagatttactgaaacgattcaccacggaggtttctaactatctggcacaaggagaaaacagagagaaggctttgatgctggtaaatctgcttttactgcacattttcttggcgagcttaacttagtgtctaacttgtgtgacatttatccagagctaccaactcgctgaagacttagctagagcatttactgagcgcacaattttgcaaatatttttggaggatgagaagaatattcctactggttctttaaaggtatatgtattctcctcttgctacctagctgaagtccttcctgaatcccttcgattgttgtattgttattattatgtgaattttcatgcagaagtaatcttcatgtaaccttgaatttgcgttctgcaggatatattgggcttactaaggtctttatatgttatggtttgcatagacgaatctgcatcctttttgagatatggttgcctatcgcgagagaatgtagccgctgctaggaaagaagtgatgacactgtgcagtgaactcaggccccacgcacttgctattgtcagttccttcggaatcccagatgccttccttagcccactcgcttttgactggattgaggcaaatgcacggtcttctgggaatgaatgactccacgctaccatcaggtagttatggggttttccaatggaactactacagatggacagccaaacacactatacgcaaagataggtgtacatttgcaactacttcctgtcaagataggttacaataatttctctgaagtgtatagttcgagatggtgatgttgatctggacttcatagaagtttatgttcttgtaatttgcacttcagaatgggacatacgtgaataagtggaacttcagaatggg</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0354500, RefSeq:Os06g0354500