Os06g0475800

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Revision as of 09:18, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0475800| Description = Similar to Transposase| Version = NM_001064172.1 GI:115468075 GeneID:4341036| Length = 4418 bp| Definition = Oryza ...")
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Gene Name

Os06g0475800

Description

Similar to Transposase

Version

NM_001064172.1 GI:115468075 GeneID:4341036

Length

4418 bp

Definition

Oryza sativa Japonica Group Os06g0475800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:16868591..16873008

Sequence Coding Region

16868591..16868794,16869009..16869514,16869607..16869730,16869854..16869992,16870091..16870393
,16870630..16870832,16871136..16871426,16872144..16872231,16872686..16873008

Expression

GEO Profiles:Os06g0475800

Genome Context

<gbrowseImage1> name=NC_008399:16868591..16873008 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:16868591..16873008 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgagtgggggtgaggatcccgggccatttgatgtgcgatcacacgtcccaaccctcggtgtagatcgctcgcatttgatgcaaggcagcggtgttcatccacatgatgatgttcaacgagggggtttgcagcaattgggtgctggagatagagaggaggagatacagggagcgagtcaaccagaacggatcgccctccatggagctcacgtcccagatgaaatggttcccaagtttggcatggaattcaaatcgtacgagatggcctatgcgttctataacaaatacgcagagcatgttggttttgacgtgaggaagagtcggagcagggcagcatacagggaaatttgttgcagcagggagggcaagaacaagtaccggggggatgagactaagcgtgaacgccgtcgtggatcagctaggattggatgccgcgcatatgtgagggtgaggaatgttgtgagagagggagaggttgtatcagtggtttttgatgatgttgttgtagaacacaaccacccgttgacgcgatcgccctcagccgtgaagcacatgagatcgcacaagcaacgggatgacacgttaatggagtttgtagacactatgcagcaatgtcgcgtaccacaaagtagtgtaatgggtgtgctgtccgatatgcatggagactgtgaaaccatccctttcacaacccgagatctggaaaacaggaaaacggctaatgttcgtgaggagaatgcggacgacataagcaagctgctgaatttttttaacgagtgcaagaaggataatcctaagttttactgggacataaaaacatatgaggaaggggtggcgctaaccatcacctacaatcaacactttttggatgtgccttgctttgagatgaaagggctgaatcatttgagtggctatttgagacgttcaagaattgcatgggcgactgccgtacgcccgcggtgcattcttacagaccaagaccctgctatggctattgcggttggtcgtgctttcccatatactatccatcggttgtgcaggtggcacattatagacggccactcagatcatctgaatactattttcatgagacacaaggacactgagacagagatgatggtgtgcattaaccagacatatacgccgattgaatttgagtatgcctggaaagagttcatagacaagtttgggctgcatgacagtacagtgttgcgggatttgtatgatataaggcatcgttgggtccctgcctttttcaaggaagattactgtggctctgtaccaaatgtgaagacagcttggccttttgcagagcagctttctagagtgtacacccgtgcagtgttcaaagtgttcgagaatacactagatgaaagtgttcattttaggattgagcaatatggagtggaccagacacagtggattatttctcacagcaagcgttcagagaagcatgactggtgccaacgtcaattcaaggacaaaggtattgtcattggatgcacagcagctagtaaagtgggggaggaggtcgcagttgctttcgaaagggcgacatcagtgatgaaagggctgagaaatcagctggaagagattccggtagatgtgcatgggttagatgcagatgatggtgtgagtgagcatgaggttgatgttggcgatggagctgggccatcgatccatcggggtggaagtgctggtgatgaaattagcaagcgtccaccaccaaagtcaatgacaaaagggaggggaagcgactccaatgagacggaacgatgttggttaagtacgggtgatagtaccggcaggagagtggatggttggaatatatgggttggtgtagataatgatgtcactgagaggttgactccatctccagtgatgcgcgaggtggatctacctcctgagtttcgtgttagggggccgccaatgccagattggccaccaccacctacagaatcagatgaggagaggtttcaagaagatcttgagcaatactacaatgatgggtacgtgtccactccatgcccatcaccagcatctgatctgtgcgatagcgaagaaaatttggaagatgaagtgaggaagatgataatcggaggcatggggatgtgctgcctaaggttaatcaataaaggatacagcgtcgccgccgagcaagcgcaagaaggtttaggatag</cdnaseq>

Protein Sequence

<aaseq>MASGGEDPGPFDVRSHVPTLGVDRSHLMQGSGVHPHDDVQRGGL QQLGAGDREEEIQGASQPERIALHGAHVPDEMVPKFGMEFKSYEMAYAFYNKYAEHVG FDVRKSRSRAAYREICCSREGKNKYRGDETKRERRRGSARIGCRAYVRVRNVVREGEV VSVVFDDVVVEHNHPLTRSPSAVKHMRSHKQRDDTLMEFVDTMQQCRVPQSSVMGVLS DMHGDCETIPFTTRDLENRKTANVREENADDISKLLNFFNECKKDNPKFYWDIKTYEE GVALTITYNQHFLDVPCFEMKGLNHLSGYLRRSRIAWATAVRPRCILTDQDPAMAIAV GRAFPYTIHRLCRWHIIDGHSDHLNTIFMRHKDTETEMMVCINQTYTPIEFEYAWKEF IDKFGLHDSTVLRDLYDIRHRWVPAFFKEDYCGSVPNVKTAWPFAEQLSRVYTRAVFK VFENTLDESVHFRIEQYGVDQTQWIISHSKRSEKHDWCQRQFKDKGIVIGCTAASKVG EEVAVAFERATSVMKGLRNQLEEIPVDVHGLDADDGVSEHEVDVGDGAGPSIHRGGSA GDEISKRPPPKSMTKGRGSDSNETERCWLSTGDSTGRRVDGWNIWVGVDNDVTERLTP SPVMREVDLPPEFRVRGPPMPDWPPPPTESDEERFQEDLEQYYNDGYVSTPCPSPASD LCDSEENLEDEVRKMIIGGMGMCCLRLINKGYSVAAEQAQEGLG</aaseq>

Gene Sequence

<dnaseqindica>1..204#419..924#1017..1140#1264..1402#1501..1803#2040..2242#2546..2836#3554..3641#4096..4418#atggcgagtgggggtgaggatcccgggccatttgatgtgcgatcacacgtcccaaccctcggtgtagatcgctcgcatttgatgcaaggcagcggtgttcatccacatgatgatgttcaacgagggggtttgcagcaattgggtgctggagatagagaggaggagatacagggagcgagtcaaccagaacggatcgccctccatgtgtagatgatgctcatatgaggacgccgacgaggaatgtcatgcatattcatgtaagttgtctttctcgtgacagtctcaaaattggtgatatgttcatagttttggatctatagtgtgccatttatttatagtctggactgtgtacattgcattggtttttagtcgtgtaaagattacattatgatgatgtgaaatgtaaataatttattagggagctcacgtcccagatgaaatggttcccaagtttggcatggaattcaaatcgtacgagatggcctatgcgttctataacaaatacgcagagcatgttggttttgacgtgaggaagagtcggagcagggcagcatacagggaaatttgttgcagcagggagggcaagaacaagtaccggggggatgagactaagcgtgaacgccgtcgtggatcagctaggattggatgccgcgcatatgtgagggtgaggaatgttgtgagagagggagaggttgtatcagtggtttttgatgatgttgttgtagaacacaaccacccgttgacgcgatcgccctcagccgtgaagcacatgagatcgcacaagcaacgggatgacacgttaatggagtttgtagacactatgcagcaatgtcgcgtaccacaaagtagtgtaatgggtgtgctgtccgatatgcatggagactgtgaaaccatccctttcacaacccgagatctggaaaacaggtaaaaaaaattgaatggtacatttaaatgttcgctcttgacttgatcgccaaaatacatttgcagtgttaattaaaatagtgtctgggcaggaaaacggctaatgttcgtgaggagaatgcggacgacataagcaagctgctgaatttttttaacgagtgcaagaaggataatcctaagttttactgggacataaaaacatatgaggaaggggtggtaaagaatgtttttggagccacgctagtatgcaagcagaatatgctgatttcggcgacgccattacttttgacaccacctacaagactaacatttatgggatgcctctggccatgtttgtaggcgctaaccatcacctacaatcaacactttttggatgtgccttgctttgagatgaaagggctgaatcatttgagtggctatttgagacgttcaagaattgcatgggcgactgccgtacgcccgcggtgcattcttacaggtataatctaaaataatttttactgtttgtattctcttgtgaaaatattattgaataggtgactaacagataggtgccctgcttatgaaatatttcagaccaagaccctgctatggctattgcggttggtcgtgctttcccatatactatccatcggttgtgcaggtggcacattatagacggccactcagatcatctgaatactattttcatgagacacaaggacactgagacagagatgatggtgtgcattaaccagacatatacgccgattgaatttgagtatgcctggaaagagttcatagacaagtttgggctgcatgacagtacagtgttgcgggatttgtatgatataaggcatcgttgggtccctgcctttttcaaggaagattactgtggctgtatgacgtcgacacaacgcagcgaaagctttaacatgttagtgaagagtagttttgtagaccaccaaacagcgctgcacaggtttgctcgaaggatacttgaggtggtactttcaaggaaggagaaggaggctgcagagacgcgagcttgtcaagtaatgtaatgttgataaaataaaatgtttgctttttgtattggacctatggatgtaatcttgtttgcatggtctttcaagctgtaccaaatgtgaagacagcttggccttttgcagagcagctttctagagtgtacacccgtgcagtgttcaaagtgttcgagaatacactagatgaaagtgttcattttaggattgagcaatatggagtggaccagacacagtggattatttctcacagcaagcgttcagagaagcatgactggtgccaacgtcaattcaaggtaatggcggatgtagtgaatgggcagttcagctgtgaatgcatgcaatgggagcacacaggttagagcataatattagtattttagttcagttgtgcattttttgtaaaatttgctgattcgatcgtaattttgaaggtttgttctgtccccatttactgagagcattcgtgcatgttcaagttgagaagattcctcatacatatgtactgcgtcgttactcaagggagcaaagagtgatgtcaattttgaccggcgtgatcgtccaatagcggggccagatggtgttaaattatcatacaggacaaaggtattgtcattggatgcacagcagctagtaaagtgggggaggaggtcgcagttgctttcgaaagggcgacatcagtgatgaaagggctgagaaatcagctggaagagattccggtagatgtgcatgggttagatgcagatgatggtgtgagtgagcatgaggttgatgttggcgatggagctgggccatcgatccatcggggtggaagtgctggtgatgaaattagcaagcgtccaccaccaaagtcaatgacaaaagggaggggaagcgactccaatgagacggtccgtctaggtgctcccggacctaaaaaatgcaccaggggctgcagttggtgtggtctaaaggatgccacaatgtgagtacatgccctaaaaacccagcaaatttcgaacgtttagcagcagctagcagcagggtcaaaaggaagaggggtcgaccaaggggaagtggcagtggtggtagtcgtggatgaaaagatgtccggcggaccctgatggacgagttggagggtggacaggaggatgagggctgtagcgttcaaggagacgaaggtgacggcatcagcgcgcaaacgatggtgattgggagggtgaatcaaagtgactagaagaaatttgtgttaaatcttgtgttcaagtgcatatttgaactaaatgttagtaactagatgacatgaactatgttttgaagaattgtggtcggatgtgtgttgacaaacattgtaaggtgatatgttgagtttgtttctgttaatattggtatttgtttaattttggtaattaaataaatggtctgcgatgtactgagggaaatatttgtgcaataatcggcgcaataaattatagaagtgaaaatactggtgccatgtagaaacagtactgtaaaaagggggctcaggtcagaattcgtagttagtagatgatttacttagtgtgttcgtaaggtgcatggatggcttacagtagcactattcgtagtgtaattgctgggggctgtaggaacgatgttggttaagtacgggtgatagtaccggcaggagagtggatggttggaatatatgggttggtgtagataatgatgtcactggtacaattgtagtaataaaaaaataaatgtacagcgagatagcaaccgcatgcattcaacgattttgtggatgtagagtgatgaatggaaatgtgtttactttgaatttcgagactgtggccggggtatgattagattatagttaaataatttctggtatgtgtgcatggatggggtgatgtgcatgggagatattggcggcaagatggtggataacaattaggatgaaatggtcaagcgcatggttgggaagctatctttagctaagtcaatatgtatgcattatatatagtacacgacgggctggacagttgcctatcaatatccaggggggaaagcataggcgcatagatgtcagtgggggctgattttggcaaagagctgtctaagctacccgatggctcgccggcctcaccctcaatacatggtgattcatccggctcacattcaccagagaggttgactccatctccagtgatgcgcgaggtggatctacctcctgagtttcgtgttagggggccgccaatgccagattggccaccaccacctacagaatcagatgaggagaggtttcaagaagatcttgagcaatactacaatgatgggtacgtgtccactccatgcccatcaccagcatctgatctgtgcgatagcgaagaaaatttggaagatgaagtgaggaagatgataatcggaggcatggggatgtgctgcctaaggttaatcaataaaggatacagcgtcgccgccgagcaagcgcaagaaggtttaggatag</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0475800, RefSeq:Os06g0475800