Os06g0480000

From RiceWiki
Revision as of 09:19, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0480000| Description = U box domain containing protein| Version = NM_001064184.1 GI:115468099 GeneID:4341049| Length = 6581 bp| Definition...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os06g0480000

Description

U box domain containing protein

Version

NM_001064184.1 GI:115468099 GeneID:4341049

Length

6581 bp

Definition

Oryza sativa Japonica Group Os06g0480000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:17141258..17147838

Sequence Coding Region

17141682..17142456,17142772..17143931,17144380..17144487,17144634..17144819,17145489..17145545

Expression

GEO Profiles:Os06g0480000

Genome Context

<gbrowseImage1> name=NC_008399:17141258..17147838 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:17141258..17147838 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagaataataatgatggagtgattggaatatcctggcgtaattctaatccaaaggttcacagctcaatgtgcagtgaattgacaatgatgttagataaagtctcttctattcttccctcaatcgaaactgctcaaccaggatgtaaagcgggtatagaggaactatgcaacctgtacaacatagttgacaaaggaaaactcataatccagaactgcattgagtgcagtagtctttacttggctattacaggggaggcaactgcaatgcggtgcgaaaggataagagatgcgctgaggcgaagcttgttcctggttcagaatatggtcccgtcatcattagctaatcaggtggctgatgttcatgatgatcttggggatgtgaaattcattgttgacccagaagaagatgaggctggcaaagccattttggagatgcttcggcagtctgatgcaacccaagaacatgaactccagactttcttgtttgcagcgtcaaagttaaatttgacgtcaccaaaggctatcttaattgaaagacgagcaatcaagaaactactggacaagatcaatggtaatgatcccaaaaaggaaggaatactcaaattttttcaatatctagttaggaaatatggaaagactatgaagcctgagggtagtgcaaagaatgaaggtgtggatgttgcaaacgttacttcgagtacaaacctaattgctagtggtaccgatgctccacagaaatgcttttcacctacaaactcttggactggaagatgtgaagagcagaataatttgtcacgattttctactcctccagagttctgctgcccactatctatgaagctgatgtacgatcctgtgataatagcatctggacaaacctatgagagagagaacattgagaaatggttcagtgagggatatgatatttgtcctaggacacagttaaagttagaaaatttcacgattactccaaatacttgtatgaaggctgtgatctgcaactggtgcaaagataatgagcttgaattcacttctttacctgaacaatttcatagttactctgtttcaagtctacacaatatctcagcacctctagttgctggaacaaagagagattacatgtctgatcatagcagttcatctgttgcattatctggttctagttatgtatcatctccaatgcgggaaacagaagagtcaaggactaattctactcagtttttttcaaacgcttattaccagttgtatttgtccttcagcagcttcaacaaggagatgtttctgaatttcttttacgagctgtccgagcttccaatggaacttcaagtgaaggctgtcagagatttcaaaagtgttctgaatcgtgaatatcaaatttggcgttctatgatttccaatggttttttagaagcatttcttgagtttcttaagaacgataatggaaaatgcacaatggaagctcaaagaactggcattcagttttttcttgcttttctacgtaatagcaggacccgaattccatccattagtgaagatgcagtgcgtctcgttgcttcatttcttgattcagagttaaaaactgaagcattggagatactccatgaactgctgcagcaaccaagttgtcggaaatctcgtctcatggcatctgttgttgctccatctgtgtttctagcttgggatagtgcagactccctgtgcctagaactagttttgaagatcatctgcgagctttcattcaaaaatgatgtacaatctttcctaatttcttctggaataatctcaaagctatctccaattctcagtcaagggaaatcgcctgagtgttgcctaaagattctactaaatttaagtgaagggaaacaagctgcggatctcattatcagaactgatcaatgcctcagttctatttcagattatctggacacaggaagctccgtggaacgcgagcatgcgtcaggtatccttcttgccttatgctctcgcagcatcgacgattgtgttcttgtcatgaaggaaggtgtcatccctgcgctggtcgatttgtcggtcaatggaactgaggttgcaaaggcttcttcaatcaagttgcttcaacttctcagggactctagacaaagcgaccagtttggcaattcatgttcaagtgaggtggctgtcaatggtgcagcagagaattcgcccattggcacgatctgcaaacaaccaatatcaaaatcagctcggtatatctcaagaaagctcagcattttctcgaaacctcgatcgctgaccctcgtctga</cdnaseq>

Protein Sequence

<aaseq>MENNNDGVIGISWRNSNPKVHSSMCSELTMMLDKVSSILPSIET AQPGCKAGIEELCNLYNIVDKGKLIIQNCIECSSLYLAITGEATAMRCERIRDALRRS LFLVQNMVPSSLANQVADVHDDLGDVKFIVDPEEDEAGKAILEMLRQSDATQEHELQT FLFAASKLNLTSPKAILIERRAIKKLLDKINGNDPKKEGILKFFQYLVRKYGKTMKPE GSAKNEGVDVANVTSSTNLIASGTDAPQKCFSPTNSWTGRCEEQNNLSRFSTPPEFCC PLSMKLMYDPVIIASGQTYERENIEKWFSEGYDICPRTQLKLENFTITPNTCMKAVIC NWCKDNELEFTSLPEQFHSYSVSSLHNISAPLVAGTKRDYMSDHSSSSVALSGSSYVS SPMRETEESRTNSTQFFSNAYYQLYLSFSSFNKEMFLNFFYELSELPMELQVKAVRDF KSVLNREYQIWRSMISNGFLEAFLEFLKNDNGKCTMEAQRTGIQFFLAFLRNSRTRIP SISEDAVRLVASFLDSELKTEALEILHELLQQPSCRKSRLMASVVAPSVFLAWDSADS LCLELVLKIICELSFKNDVQSFLISSGIISKLSPILSQGKSPECCLKILLNLSEGKQA ADLIIRTDQCLSSISDYLDTGSSVEREHASGILLALCSRSIDDCVLVMKEGVIPALVD LSVNGTEVAKASSIKLLQLLRDSRQSDQFGNSCSSEVAVNGAAENSPIGTICKQPISK SARYISRKLSIFSKPRSLTLV</aaseq>

Gene Sequence

<dnaseqindica>5383..6157#3908..5067#3352..3459#3020..3205#2294..2350#accattaactccccactcactctcacgtctcaccggcgcaggaaggagaagtcctcgtgtttcgtcctctctccctcctcgatcctaccccttgccggcgtcttgcttctcctcctcccacttgagcggcagccgtcgccgtgatgtagcaggcagtcccgccgaatcgatcccgcggtagctagctagctgcaggctgcagcagctaagtccaacaattttaggggggaagaacccaatcttgtgaacgaaagaactagtctgggtcagccaagaatccagccaagattatttctatctgtcccgcggggtgagggttccaacctgtcttgtttcttctttacttttttctttcttttttctcagcatctattgaatgtttcctctgcttaattagggcagtttaaggtttcttcatctgctccagaaactcaggacagaagcagtttactggtactcttttgttctgttacatccctttttatttttaatttttttttaaaaaaaagagtcagtttttacatgttaaattattttttttgcgcatgaatcactgtttttttaggctatctttgtgtattccagcagattataatcacttttgctctctgggacaagaaaggaagaggggcaaatccaaaagaggtcagtttcttcctcaagtttcaccttctgctgagctttgttttgctaaattcttttgttgattatccgctggagttcgcttgtgggtgcctatcttctcagctcttcctcagcagtattctgagttgcttattgctctgcatatagatgtagagaacgaaatttcaaaaataaagcctttttactttttgagttcaaatctctctattccgaatctcttgttctctaggccactatactttttctcctttaccttttccctttatgtacttatctgcttgcttaggattagtgctctgttaattttatctgtttaaaaaatatttactttcgtaccgcttcccttctttttcgtgtatgagctctctgttatcctttaggttggaaattccatcatatggtacagcatattcccactaaagaaaagggtacagtataattgacctttcaaaacaaaaaaaaaaaggtggtcctacactcctactgactacgattgatcgtctacaatctagatacatagtggcaagtgataattattttcttttggaagaatttagttacgtttgcaattttttttggttcactcgaatgatttcttttccagtaaatatagaataccaagattgtgaagcatgtattagagagaaattatttgattggcaccaaccaattggcactgagttgttacaggtgcttaaaaatatattatttttatccccgcataatctttttatgttaagaaatttttttttaaccaaacagttccttaacataatatgcatatttctcttggagcattgtagatcttctgtaaatatcttattcatgtcaattatatttagagactccaatagaccatagaagcttatatgtcttctgaaatacaatttttttgtggaatggtagaattgtttttaaaaaataaatatagtaagaaagtttagtgttattatctgctaggttaatctgaaaacttccaactgtcaagaaagatttttgaaaaacaaatcagcattcagaccaattaatcaactttcacctatagttggatctgatgttgaaatcagaatcactcttcaatttgcaccgatctcctgtgttattaatagtctttagtctaagatttgaccctgctgtacatgttcggcttagaatttgagtacatcaccttgaactgcattggacaatgtgtgttggacctagatagtcaccaccaggagtacgtatgataaactgtactacttcaaatatcaatttggtttttttcttcctgctgtactaacataaaaaaaatcctaattgcaaataaaaagacgaaaaagctgagcacttgcttttttttatttgcatgactcacgtacaaatacaaaaaggatatctacaataagttaagaaaagttcagataaagttcaactgactgcttagcttgatgtggcgtaacctttctgcctgttttgacaatgttcctttatttgcatcttgctttaatatgatcctatagcacaagcccccaaggttctcgattgccatacaattgatagtattttgtagctatgatcattttggtattttctgctgatattgttatactgtatgttgactcttattgggcagtttgatacttttatcacggattactgttagtcgatggagaataataatgatggagtgattggaatatcctggcgtaattctaatccaaaggtatggatattggaccgctgaaactttcatcttttagtaatgtttcttgttacctgttgccgtccatgttttgtttggaatataggttcttatgatattgctttatcatttgcattatttgattggttggaaatagttttacgttgctttcttagtaccagaaagatctatgggtatgaaatttgagttctttaaggttttatccctgagtaaatatcattaattgtgtaacatgcacacaaatcttagactacacatcactatagatggtaaatgctgtgtaaaattgtgactccatggcaaagaatttgagactacctcaattggtcacatatccagttcaaatttgggagtgttttctttgtctgattcaagatagatgcacaataatttcctcataaagatcatatctttgtatggcataaagaacatatctttgatacaaacattttttcttgcatgcttatctatgatatgatgtgattcctttgtacctgttgagaggcagagttaaaactgcagtatttcaataagatcattatttgatgtttcatataaatattatcatttacttcatagatagttttcagtagtgattatctccccattatatattcttcaacattttattacagttaatgcaattattcttttgtctttctgtcttaggttcacagctcaatgtgcagtgaattgacaatgatgttagataaagtctcttctattcttccctcaatcgaaactgctcaaccaggatgtaaagcgggtatagaggaactatgcaacctgtacaacatagttgacaaaggaaaactcataatccagaactgcattgagtgcagtagtctttacttggtatgttgttctttaatattgataaatgagtcattatgttcaggaaactataatgactcctttgtttttatcttattgttttatttgagattgttttccctggtttctgaacaattgctttctgataccaaatttgcacatctcaggctattacaggggaggcaactgcaatgcggtgcgaaaggataagagatgcgctgaggcgaagcttgttcctggttcagaatatggtcccgtcatcattagctaatcaggttagtttacttaattgaactgataataacaggcaaactttttctacattgcacagcattaaccacatggtttgctgtgttaaaagtttgaagctagtgatgacacaaacaacatcaaacttgcgtctgtaatagagatgaagctctccttggacagtacttgcgtctgttatttctggggcatcaacaaaacctaacaatttcaggatattattcacaaacatttatctggaggtttagacagtactgtatccagaaacatgatctatgttttttgttgtttctccaaaagattttttagattacatggcagatgtgtgagtataaacacacacatcaattctcaggacaattgtatcatctcgatgcaatttaatgagttcttccattatctaaatatcgcacagattgtcacattaacatgtttatacttgactatttgtcttaggtggctgatgttcatgatgatcttggggatgtgaaattcattgttgacccagaagaagatgaggctggcaaagccattttggagatgcttcggcagtctgatgcaacccaagaacatgaactccagactttcttgtttgcagcgtcaaagttaaatttgacgtcaccaaaggctatcttaattgaaagacgagcaatcaagaaactactggacaagatcaatggtaatgatcccaaaaaggaaggaatactcaaattttttcaatatctagttaggaaatatggaaagactatgaagcctgagggtagtgcaaagaatgaaggtgtggatgttgcaaacgttacttcgagtacaaacctaattgctagtggtaccgatgctccacagaaatgcttttcacctacaaactcttggactggaagatgtgaagagcagaataatttgtcacgattttctactcctccagagttctgctgcccactatctatgaagctgatgtacgatcctgtgataatagcatctggacaaacctatgagagagagaacattgagaaatggttcagtgagggatatgatatttgtcctaggacacagttaaagttagaaaatttcacgattactccaaatacttgtatgaaggctgtgatctgcaactggtgcaaagataatgagcttgaattcacttctttacctgaacaatttcatagttactctgtttcaagtctacacaatatctcagcacctctagttgctggaacaaagagagattacatgtctgatcatagcagttcatctgttgcattatctggttctagttatgtatcatctccaatgcgggaaacagaagagtcaaggactaattctactcagtttttttcaaacgcttattaccagttgtatttgtccttcagcagcttcaacaaggagatgtttctgaatttcttttacgagctgtccgagcttccaatggaacttcaagtgaaggctgtcagagatttcaaaagtgttctgaatcgtgaatatcaaatttggcgttctatgatttccaatggttttttagaagcatttcttgagtttcttaagaacgataatggaaaatgcacaatggaagctcaaagaactggcattcagttttttcttgcttttctacgtaatagcaggtgagcattcttgtataatatattctccttgtgtttggctgtgtacaaccatgttggatgtagagctctggttttaattcattaattatctaaaaatctccttgtgcagattttactgttgacaaacataagatatttcctgtttctacctttttcaataaaaatccataaataaaactgagtgccctatatttatcctccaaaaacgaagattgttttgtgctactttttaaaaacaaagggttcagattatggcaatttgttttgtttgttctccaataaacttttgtaacggctgatttccttttcatacaggacccgaattccatccattagtgaagatgcagtgcgtctcgttgcttcatttcttgattcagagttaaaaactgaagcattggagatactccatgaactgctgcagcaaccaagttgtcggaaatctcgtctcatggcatctgttgttgctccatctgtgtttctagcttgggatagtgcagactccctgtgcctagaactagttttgaagatcatctgcgagctttcattcaaaaatgatgtacaatctttcctaatttcttctggaataatctcaaagctatctccaattctcagtcaagggaaatcgcctgagtgttgcctaaagattctactaaatttaagtgaagggaaacaagctgcggatctcattatcagaactgatcaatgcctcagttctatttcagattatctggacacaggaagctccgtggaacgcgagcatgcgtcaggtatccttcttgccttatgctctcgcagcatcgacgattgtgttcttgtcatgaaggaaggtgtcatccctgcgctggtcgatttgtcggtcaatggaactgaggttgcaaaggcttcttcaatcaagttgcttcaacttctcagggactctagacaaagcgaccagtttggcaattcatgttcaagtgaggtggctgtcaatggtgcagcagagaattcgcccattggcacgatctgcaaacaaccaatatcaaaatcagctcggtatatctcaagaaagctcagcattttctcgaaacctcgatcgctgaccctcgtctgatgagtcgagtttgattttggttggagctttgtacattttcaaacactgcccaaccagctggtgtacagtttgtagcagatagtagtgtccagatgaaatgcttgatgggatgttttttcaaccccatgtactagtgtttcttctagagtttgtatttgcagtacttttgcttttctttactaggttgttttagataaagacatacggtgaacaggttttatgtcgaaagttgcattttattctctgctgttgcatatacagttgaaaatctgaaggggcaggcagcacatgtcagtctgaaggatgcaacacctttgataatatggcgtctttgttatgtgtgtgtgtgcgtgtgtgtatttaaaaggatgaatagtcgaagtttaaatatgaatagtattcggttaccgtatactttatttcc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0480000, RefSeq:Os06g0480000