Os06g0484950

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Revision as of 09:19, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0484950| Description = Zinc finger, SWIM-type domain containing protein| Version = NM_001187865.1 GI:297724860 GeneID:9266936| Length = 399...")
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Gene Name

Os06g0484950

Description

Zinc finger, SWIM-type domain containing protein

Version

NM_001187865.1 GI:297724860 GeneID:9266936

Length

3998 bp

Definition

Oryza sativa Japonica Group Os06g0484950, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:17397652..17401649

Sequence Coding Region

17398543..17399469

Expression

GEO Profiles:Os06g0484950

Genome Context

<gbrowseImage1> name=NC_008399:17397652..17401649 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:17397652..17401649 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcagaacagagggagtgtatgaggcatttgatggagaacatgaagaaattatttcatgggtctatctatgcgaggaagatgtggcctgcagctaagacttacatgcttgagaagcatgacaagtggatggatgaagtgacaacagctagtccagaggtgaaacaatggcttaaagaatatcacaacctactgtgggccagaagcaagtttgattgtgctataaagtgtgactacatcaacaataacctggcagagtcatggaacagttggatcaaagacttgaaggatttgcctgttgatgctcttgcagatgccattagggagaaaactttgatcttgtttgagaagaggaggaggatctctacagctctcaatggagtgattcttcctgttgtcatccatcagttgaatgaagcctcaagaggtttaggccatctgaaggttactaaaggaaatcctgaccaagcagaagttacagagacatacaaggatgaggaagtgactaggcatgtggtgtaccttgataagtggacatgtacatgcagggaatggcaggtcactgggaagccctgcccacatgcattggcactgatcacaacaattaggcagccaaatatggagaaatatgttgacacagcttactctgtgcacagatttcaggcagcatatgcaagtgttatccctaacatcacagacaagaagcagtggccaaaagttgataaaggtttcaagctcctgccacccgttcccaagaagagaggagtgggtaggcagagaaagaataggatcccatctgctcttgaaaagggcaaaggaaaggccacaaggcaagttcaatgtccagactgccaacggtttggacataggaagggtagtgtaagatgtgaactgactggaactaggaagaggttagttcagctatga</cdnaseq>

Protein Sequence

<aaseq>MAEQRECMRHLMENMKKLFHGSIYARKMWPAAKTYMLEKHDKWM DEVTTASPEVKQWLKEYHNLLWARSKFDCAIKCDYINNNLAESWNSWIKDLKDLPVDA LADAIREKTLILFEKRRRISTALNGVILPVVIHQLNEASRGLGHLKVTKGNPDQAEVT ETYKDEEVTRHVVYLDKWTCTCREWQVTGKPCPHALALITTIRQPNMEKYVDTAYSVH RFQAAYASVIPNITDKKQWPKVDKGFKLLPPVPKKRGVGRQRKNRIPSALEKGKGKAT RQVQCPDCQRFGHRKGSVRCELTGTRKRLVQL</aaseq>

Gene Sequence

<dnaseqindica>2181..3107#gttcgaccgccagccaccatcgacgggcgacgcgccgttgacccctgcccgccccgcgtcggccccgcgccgtcgacgccggcccggcgcgcgacatcgacgcccgtcccgcgccatcggcccctgctcgcccagcgtcggccccgggccgtcgacgcgccgcccggcccgccggctcaccgccccacgccggtcctgacgttctccacccgcagtccgccgtcgacgcatttgtcagatccgcagctccggcatcatcccggcatttgttcttccccaacagcacatcgtgacctggtagggcatcgtcgccatcgtcctccggcggcgatgaagccctcagtttgtccttcttggtaagttcattttctctcttgccctccctgcttgtattgtgttgcatgcatggagttagatgtgttctaactccattttttttatgaatctgtttatgtcaggattgatcctggcaatgcgcttagatttcttgttagggttgctaagtatgttgcgaatctagagtatggaatgctaccaatgtcagagcaagactatgattggtgggttgatattagcagtgggtataatttggataaatttcatgatgaaatggctagcaagataatctgggggccaagccaagaaattagagtttggggtttggacactgaaattggcactgaatgtaagttgacaaccaatgaagaatttggccagtggatgaattctatgttggatgataagctggtagagtttggtgttgaagttatttataaaaagggatatgaacctattgaaggcattgcaaatccagttgattcagctattcaaggtgtctctggtgtggtaactgcagatccaattgatcagtcaagtgctcaagttctctctgctatgattagtgctgaagtttcttctcctggtcatgaagaagggacgggtgatacctctagccatccacaaaatgcagaagaggctaatgctgttgtagattggagtaagttggctatacttgttgaacctgagcaagattgtgatgttaatttattgttggatgaggatcaagtttttgaggccatgggcttcaaagcagcagatcagagagcagcagctgctgcagcagctatggaagaaactgcaattcctattattccaaccgagattcagcaagacatgttagatgcagccattgtagtggacgatgaagtacccattgatgtgttggattgggacagggatgacccagatatgtcagtggggacattttacccttctatggatgagttcagaatggcagtgaagcaatatgccattgttcatgagtttgaactagagactgaaaagtctgacaaagaaaggtttagagggaaatgccatgcaattggttgcccatggataattagagcaaagacccaacctaataagagtgtcagggtattatactaaccatttaaattacctttgcaatttgacaccttgcttgctgaattcagattggagtaacttttgcatagttgctaatattgtttgcttttgcaggtccaaataaacaaatatgatcacaagtgtgcttcaagaagcagagttcgtggaaggatggcatctcaagcttgggttgctgagagggcaattccatttctcaacaagaagaatgggatgggtccaaaggaacttcagaaggagctgcaggacacctacaagataaccataccttatcatacagtttatcatggtaggaagagggcaacagacaagttatttggtaagtggtctgattcatttgattggttgtataggttcaaggcagaggtggaaatgaggtccccaggtagtgtagttgagatagacacagttaaagttggagataaggttcacttcaatagattcttttgtgcatttaaagcatcaattgatggtttcttagggggctgtagaccctacattagcatagattctactgcccttaatggatattggaatggacacatgcctgcagccaatgcattagatggacacaattggatgtttcctttggcatttggtttttttgattcagagaccaaagagaactgggtttggtttatggagcagctagccaatgcaattggtccagttccaaaattagctatccacactgatgcatgtaaagggttggaaactgcagttcacaaggtatttccatggcagaacagagggagtgtatgaggcatttgatggagaacatgaagaaattatttcatgggtctatctatgcgaggaagatgtggcctgcagctaagacttacatgcttgagaagcatgacaagtggatggatgaagtgacaacagctagtccagaggtgaaacaatggcttaaagaatatcacaacctactgtgggccagaagcaagtttgattgtgctataaagtgtgactacatcaacaataacctggcagagtcatggaacagttggatcaaagacttgaaggatttgcctgttgatgctcttgcagatgccattagggagaaaactttgatcttgtttgagaagaggaggaggatctctacagctctcaatggagtgattcttcctgttgtcatccatcagttgaatgaagcctcaagaggtttaggccatctgaaggttactaaaggaaatcctgaccaagcagaagttacagagacatacaaggatgaggaagtgactaggcatgtggtgtaccttgataagtggacatgtacatgcagggaatggcaggtcactgggaagccctgcccacatgcattggcactgatcacaacaattaggcagccaaatatggagaaatatgttgacacagcttactctgtgcacagatttcaggcagcatatgcaagtgttatccctaacatcacagacaagaagcagtggccaaaagttgataaaggtttcaagctcctgccacccgttcccaagaagagaggagtgggtaggcagagaaagaataggatcccatctgctcttgaaaagggcaaaggaaaggccacaaggcaagttcaatgtccagactgccaacggtttggacataggaagggtagtgtaagatgtgaactgactggaactaggaagaggttagttcagctatgatttactttcttttagctattgtacaatgtattgcttaagctaaccaatgttttgcaggaagaaaaacaacaagacaaaaacaaatgtgggaaggaagaaagcaaagggtgccattgatgcccaagctgctgcagttgatgttcaagcgaatacgccaagaacaagagctgctgcagttgatgttcaagcgaatacaccaagaacaagatcagctgtagcaaaagaagcagctgcagaatcacaagtgcatgcaacacaaacaagcagtcctggaccaatcactaggaggtaaggcataattgtgttgtttttcatttcatttcacttaactttggttcatgtcttgcttacacccatcaaaaacaacaggaggctggcattagaggttggtcaaagctccgttgaagtagcacttgtacccgtgcaggtgcaagcggcagtacagccaaccaagaaattcacaccaaggaaaaaactagctagcaagccaaaaagggcatcaccaccaaagcttctgaaataaaatgtgtcaatctgctatcaatctgcaagtattttgctatgtatggctgaaatgcgtcaatctgcaagtattttgctatttatgtctgaaatcgtcaatctcgaagtaatatgaacttctaatgtgcatggcctgatgatgtatttttgcttttgtaatgatatatgccatgatgaacctgttatatggcaccgaccattgtatggtctgatggccctgatggacctgttatatgtatagaccaatgtatggtctgatggacctgttatgcatggcctgcttttgtaatgatgtgtggcctacaatgaacctatgaattgtatggttgatgaattaagatatttggatgggacgtgatgaattaaggc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0484950, RefSeq:Os06g0484950