Os06g0486900

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Revision as of 09:19, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0486900| Description = Similar to Formate dehydrogenase, mitochondrial precursor (EC 1.2.1.2) (NAD- dependent formate dehydrogenase) (FDH)| ...")
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Gene Name

Os06g0486900

Description

Similar to Formate dehydrogenase, mitochondrial precursor (EC 1.2.1.2) (NAD- dependent formate dehydrogenase) (FDH)

Version

NM_001064202.1 GI:115468135 GeneID:4341070

Length

6547 bp

Definition

Oryza sativa Japonica Group Os06g0486900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:17553480..17560026

Sequence Coding Region

17554028..17554099,17556942..17557113,17557768..17558036,17558192..17558463,17558556..17558680
,17558999..17559111,17559726..17559839

Expression

GEO Profiles:Os06g0486900

Genome Context

<gbrowseImage1> name=NC_008399:17553480..17560026 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:17553480..17560026 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgatgtggagggcaccgtcggcggcggggcagctgctcggccgcgcgcttgcatctacggctgcgcagacatcagcaggcagcaagaaggtcgtgggtgtgttctacaagggtggcgagtatgccgacaagaatcccaacttcgtcggctgcgtcgactccgctctcggcattcgcggctggcttgaatctaaggggcatcgctacattgtcaccgatgacaaggaggggataaactgcgagctggagaagcacatcgaggatgcccacgtcctgatcaccaccccattccacccagcctacatcaccgcagagaggatcaagaaggccaagaacctggagcttcttctcacggccggggtcgggtcagaccacatcgatctcccagcagccgcggcagcaggtctaaccgtggcggagatcaccggcagcaacaccgtctccgtggctgaagaccagctcatgcgcatcctgcttcttctcaggaacttcttgcctggtcaccatcagatcgttaatggcgaatggaatgtcgcgggcattgcccacagaacctatgatcttgagggcaaaactgtgggcactgttggtgctggtcgcatcggcaggctcctgcttcagcgtctcaagcccttcaactgcaacctgatgtaccatgacagggtgaagattgacccggagcttgagaaggagattggggccaagtatgaggaggatctcgatgccatgcttccaaagtgtgatgtcgttgtgatcaacatgcctcttacggagaaaacaagaggtatgtttaacaaagagaggattgcaaagatgaagaaaggtgtgaccattgtgaacaatgctcgtggagcaatcatggatacccaggcggttgctgacgcttgcgccagtggtcacgttgcaggatatggtggtgacgtctggttcccccagccagcaccaaaggatcacccatggcgatacatgcccaatcatgctatgacccctcactgctctgggactacaattgatggacagctgagatacgcggcgggggtaaaggacatgctggacaggtatttcaaaggggaggacttcccggcgcagaactacatcgtcaaggcaggccagctcgccagccagtatcagtaa</cdnaseq>

Protein Sequence

<aaseq>MAMWRAPSAAGQLLGRALASTAAQTSAGSKKVVGVFYKGGEYAD KNPNFVGCVDSALGIRGWLESKGHRYIVTDDKEGINCELEKHIEDAHVLITTPFHPAY ITAERIKKAKNLELLLTAGVGSDHIDLPAAAAAGLTVAEITGSNTVSVAEDQLMRILL LLRNFLPGHHQIVNGEWNVAGIAHRTYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLM YHDRVKIDPELEKEIGAKYEEDLDAMLPKCDVVVINMPLTEKTRGMFNKERIAKMKKG VTIVNNARGAIMDTQAVADACASGHVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHCS GTTIDGQLRYAAGVKDMLDRYFKGEDFPAQNYIVKAGQLASQYQ</aaseq>

Gene Sequence

<dnaseqindica>549..620#3463..3634#4289..4557#4713..4984#5077..5201#5520..5632#6247..6360#tattttattattaaaagtattttaagtataacttgtctctttttatatttgcacaaatattttaaataaaacgaatgattaagcgttaaaaaaagtcaaaacgacgtctaatttggaatagaggaattatactgtttaataatttggaaaaaacgtgtttaataatttggaaaaaacgtgtatgtagacaacgagaaagaagttgagaaaatatagattagaacgcacctttcacgcgagtatttgcctttccatgaatccacctatgctcaggttttacctgacaaaggcaaggccctgggggtatgcactacgctgactgcacggtcgcagcagccgaggggccaccacgcgggcggcgcgaggtggcggaggcggagctacaaatatccatcccttccaatccaggcttccacttccatcgcatcgatcgagtcggctgcttgcctgcactgaatactgatcgatattccatcacactcactgcctcttgtgccactctctcgcttgctcgccgttgctgagctcaatttcatatcctttcctccatggcgatgtggagggcaccgtcggcggcggggcagctgctcggccgcgcgcttgcatctacggctgcgcaggtacgtatccttctctttcctagctatgttccgcgcttcctatctcagcttatagccattgcagggtttacgattccgacgacatttggtcggatttcgcgaaaattcgatatttcgacgaggctcgaaagtagaaaccgtatgagatttcgagaagtttcatccaaatttaaatttgaattgataaaaaaagaaaaaaaatcaaataaaatcttataaatactatgatattcatagaacctattgggatataatttttccaaaaaaatgatgtattgtgtgtatttactgaaacttacatcaggaaagaaaagaataaagaattaaaaaaaggaaaacacttagatggaccggattagtgatcgaaatttcgccaaaaccgaccggttttcaagaacttgtcggcaaacttagggaatttttattcaaattttggtttatgaaatttgttcgaaatttactagttttccaccggatttcgcgaaattccgaattccgccagtgcccgaaacggaagggcctgtcggaatcgtaaaccctggcccatcgtttctcaagcgcgggctttctaaacggttgaacaatatgtttttaaaaatattttctataaaaaagttatattaacttttatgttttttactaatacttaattaatcatgtactaataagttaataattatgtactaatgaactatctcgttttccataacggatgagatgagatccgaacctctaggttcaaacctctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagttgcaacccacttaatataatcctatcttactataaagttatcccccactaactccttaagcttaacatgcaaagatgccacatcatcatccactaattaacaaaatgccacatcattatccactaacaatcatcacatttaaacatcatgcaaacatgctatatctttatagtttttataatttaggagcttttcaaatacaaacatgttaaattatcatccaacataattcatataatgtttcaatacatatctttattatgttttataatattctatggtccaaattatctttctccttctttcctctaattaagtcatatcacatcaattgtttttagcttttagatgattaatctacggtctaaactatatccctacttttcttctttcataaagtcgtaccaccttactttttacgtttgaatcatcattctacatactatttaaatttatattatcataaactacattaatttacttaatctgatattatctagctatcttacacgttatttttttattgttatcatactaaattcccgcagcaatgcgcgggggtttcacctagttactctggtaaagaagccaccacattgactcttgtcattgtcaatttatcatccgttgaatttcatttggatgtttagaagttcatttcatgtttgattactcatttactttgctattcacatgtactaagcgcgttgagaaataagcagtaacctttcacgtgttgtcatattccaatagaagtaattaatattctactccacataaacaactgtacaacatgatttatactaacaaacttcacatttagagccccaccaaaaaaatcaaaaagccattatccagaaatttccgtagcaacgcacggggaatcacctaaaaattcaatgaccagtctatgctccagtcctctcgtttctcactattcaggaaggatgcgcgtgaaaaagggaaagtatatatagaagttgaaaaatatacaatcgaacatagccaaatgttctgtaatcaaaaagaaaatggcaacgaaaatctgtttctggtacactttttgattgtttctgtttttagctatatataacatttatatatatttttaatttcttttcacttcatattgcaatcgccactaaattgataaattgataaatatgagaatttttgaccgatcgagaatcggttctgtataaataatattgtttctgaccgttttcatcccaatgtaatcggcttttaactattgctcctctttggtagacacatttaattcgtcacacagcaccaaccttataaaatagtaattaccttgcacacgatgggaacacactatttcattccatatttttgggtaggcccagacagtcacatttgtatctgcactacatataacatatatgaccaaacaatgcaagtagagtgttaaaaactatttaatgacatatcagaaaaaatacacaatattgttaatttgtaagctcatcaaatggtgattaacaaatcttttatccatgttcacaagtgaaatcataaactcataatttttgttgtatgtttgataatacaaaacatttcggctaatacaaattttcccatatcctatttcatatatttcgaatttggatttggacacggatcataccaggtaatcatttttctttaccgtatccttgccataaacatctggtcagcagacgggctgaaaatacctgtcacgtttatacccctgcctgtcgggttttctttatttcccgagaaatgtttcctttttttttctcaggaatggtgatggacaaataatcataaccaatataactaggagtgtaagtggctaacccgcgaaatccacttataggctaaaacaagccatcaacccgcttattttaacctataagttgttcacaactgacccacttacacccctaaatataacaaatccacttgatcaacaaatttgttctatgcagctcgatatgacgaatgacaccttttggtttccctctttgtaccgcagacatcagcaggcagcaagaaggtcgtgggtgtgttctacaagggtggcgagtatgccgacaagaatcccaacttcgtcggctgcgtcgactccgctctcggcattcgcggctggcttgaatctaaggggcatcgctacattgtcaccgatgacaaggaggggataaactgcggttagtagtactctccctccgtctaaaaattaagaagtatgtattttgtttcagtacaataaagccttcacataatacttaaagactacttttgaatacaaatcaaataagatcaaatttatgtcatgaaattaagagtaattcttagtcaaagcttatgttgttgaactgaaggagtattagctgtgatcaagaggtagtttctacgaacaatttcgataaactttttttgagcattccgtagcatctatcagcatgtagacgtgtattttggttggcagccggctggaattaattttatcttatgtttttcatgctggcctgatgttcagttaattcaaattcctgtatgaccagttttttgcgcaaatgtttcaaacatgcattatatttttttccttttttgtctgatgtcttatctgttcgttgaaaaaataaaccctataacaacataatgggtaatttttctatccttaacaacatatcaataggcatcacattttttacagtaaaatttagtacgtctgagtacatctccagatactaaataccttgaggtatctgaaggatcataaaatttctctgactaaatatataggtcttaagtctgaattgcgcacacaactgacgcttctgttgtacatcaattcccagagctggagaagcacatcgaggatgcccacgtcctgatcaccaccccattccacccagcctacatcaccgcagagaggatcaagaaggccaagaacctggagcttcttctcacggccggggtcgggtcagaccacatcgatctcccagcagccgcggcagcaggtctaaccgtggcggagatcaccggcagcaacaccgtctccgtggctgaagaccagctcatgcgcatcctgcttcttctcaggaacttcttgcctggtcaccatcaggtaatgtgttaagcttcactagtccttttacaaccctatctagccctcgtatatttttagtttaaatagaaatagaaattcagtttatcctattttaaactcagtccttgaatttcgcagactaaaatgttaggttttttattatcacccatcagatcgttaatggcgaatggaatgtcgcgggcattgcccacagaacctatgatcttgagggcaaaactgtgggcactgttggtgctggtcgcatcggcaggctcctgcttcagcgtctcaagcccttcaactgcaacctgatgtaccatgacagggtgaagattgacccggagcttgagaaggagattggggccaagtatgaggaggatctcgatgccatgcttccaaagtgtgatgtcgttgtgatcaacatgcctcttacggagaaaacaaggtttatcgtccttcattgcgttcttgtttattgttccaaaatttctgtgctagcacattgtcttatctgaatttgtatgcttttttgttcagaggtatgtttaacaaagagaggattgcaaagatgaagaaaggtgtgaccattgtgaacaatgctcgtggagcaatcatggatacccaggcggttgctgacgcttgcgccagtggtcacgttgcaggtatcaccatattttcatttattttttaactatcttgcatattagcatgccatcggattttggagcctgtcatgcttcacatttgagagggttgatatgaaaaaaaaaacttaaaaatcaggacaactaataaccaagtaaggcagtatatctgtttttttttctcgaataaccaagtaaggcagtatatctgtcaagcatgatattttgtttttcccaaattattgaagaaaattttgtcagaaagaaaaagagtgttgtgcacctatgtaaattagctgtctctgaaagaacaaaccctcatccttgtgttgtcaggatatggtggtgacgtctggttcccccagccagcaccaaaggatcacccatggcgatacatgcccaatcatgctatgacccctcactgctctgggactacaattgatggacaggtcagcttctatgtttcctactctctctatttaaaaaaaaacttaaatcctaaaaatgaatctgtatctagatttatcatttggatttaattccttttggactagaggaagtactttatcttagggcataaaagagaataaaattcagcatcttattcttctgtgttagtggtaccccaccgatgattttgacaaaactgtagagcatcatgtcagctattgagacgatcacttagctattcacacccctacacagatgctaattagctatacagatgttaattggcacatttttttaattaaactacaaaagtaggtgcatacacacaacaccacactcacaacctcgcgaatgcgtcccctaacccatgctctaagagacggaaaccaacgacacatattttccataacacatagataaataagccagtttattgtctattagggtcagtttatcgtctattaggatcaaaatcacatcagatgtttgtttttgtttttactcaaagctagatgcaagtgcttcaaatcatatatgcaagtcagccataaggttttaccggctggtgtctgtaacgaattttgatgacaaataatgaaaatctttcgtgtagctgagatacgcggcgggggtaaaggacatgctggacaggtatttcaaaggggaggacttcccggcgcagaactacatcgtcaaggcaggccagctcgccagccagtatcagtaataacccccccttgtgtgttgggtgggtgtccatatatcctctgtttattcctcaagtgtggaattatttctcaagggagagagggacggataggagccaacagccaagaaacaccctctgttaatgttgtagtaacttgtatgagtgttgaaataatgaatgcctggaaggctggaataaacagctc</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0486900, RefSeq:Os06g0486900