Os06g0494400

From RiceWiki
Revision as of 09:19, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0494400| Description = Multi antimicrobial extrusion protein MatE family protein| Version = NM_001064222.1 GI:115468175 GeneID:4341093| Len...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os06g0494400

Description

Multi antimicrobial extrusion protein MatE family protein

Version

NM_001064222.1 GI:115468175 GeneID:4341093

Length

6494 bp

Definition

Oryza sativa Japonica Group Os06g0494400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:18071077..18077570

Sequence Coding Region

18071284..18071562,18073707..18074251,18074426..18074512,18074628..18074684,18074795..18075033
,18076923..18077041,18077157..18077243,18077339..18077398

Expression

GEO Profiles:Os06g0494400

Genome Context

<gbrowseImage1> name=NC_008399:18071077..18077570 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:18071077..18077570 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcgaaggggagcccggaggaggaggccctcctcgccggcgtcggaggtgatcatcagctggtggagtcggatgagttggcgccagctgcagcggtggtgcgggaggaggtgaagaagcagctgtggctggccgtcccgctcgtcgccggcgcgctgctgcagaacgtcatccagatgatctccgtgatgttcgtcggccacctcggcgagctccccctcgccggcgcctccatggccagctccttcgcctccgtcaccggcctcagcctcctgctaggaatggcaagcgcactggacaccctgtgcggccaggcgttcggctcccggcagtatcatctcctgggcgtctacaagcagcgcgccatgctgctgctcaccgccgtcagcgtcccgctcgtcgtcgtctggttctacaccggcgacatcctcgtcgcgttcgggcaggacgccgacatcgccgcggaggccggcgcgtacgcccggtggatgatcccggcgctgttcgcctacggcccgctgcagtgccacgtccggttcctgcagacgcagaacgtggtgctcccggtgatggcgagcgccggcgcggcggcgctgtgccacctggtcgtgtgctgggcgctcgtctacgccgccgggatgggcagcaagggcgcggcgctgagcaacgccgtgtcgtactggatcaatgtcgccatcctggcggtgtacgtgagggtgtcgagctcttgcaagaagacatggacggggttctccatggaagccttccatgacccgctcagcttcttcaggctcgccatcccttccgctctcatggtctgcttggagatgtggtcgtttgagctcattgtgcttctttcaggtattcttcccaacccgaagctagagacgtccgtgctatcaatcagcctcaacactgctgctttcgtttggatgatcccctttggcctcggttctgccataagcacccgtgtctccaacgagctcggagcgggccggccccgcgcggcccgcctcgccgtccgggtcgtcgtgttcatggccgtctcggagggattggtgatagggttggtgctggttggcgtgcgctacatctggggccatgcttacagcgacgaggaggaggttgtcacatacgtggccaagatgatgctggtcatcgcagtctccaacttcttcgacgggatacagtgtgtcctttcaggtgtggctagagggtgtggatggcaaaaaattggagcttgtgtaaaccttggcgcctactatatcgttggcatcccttcagcttacctcatagcttttgtcttacatgtcggcggaatgggtctatggctaggcatcatctgcggcctcttggtgcaagtcctgctactaatggcaataacactatgcacaaattgggataaagaggcggctaatgcgaaggacagggtcttcagttcttctcttccttcagatctcgcaacatga</cdnaseq>

Protein Sequence

<aaseq>MAAKGSPEEEALLAGVGGDHQLVESDELAPAAAVVREEVKKQLW LAVPLVAGALLQNVIQMISVMFVGHLGELPLAGASMASSFASVTGLSLLLGMASALDT LCGQAFGSRQYHLLGVYKQRAMLLLTAVSVPLVVVWFYTGDILVAFGQDADIAAEAGA YARWMIPALFAYGPLQCHVRFLQTQNVVLPVMASAGAAALCHLVVCWALVYAAGMGSK GAALSNAVSYWINVAILAVYVRVSSSCKKTWTGFSMEAFHDPLSFFRLAIPSALMVCL EMWSFELIVLLSGILPNPKLETSVLSISLNTAAFVWMIPFGLGSAISTRVSNELGAGR PRAARLAVRVVVFMAVSEGLVIGLVLVGVRYIWGHAYSDEEEVVTYVAKMMLVIAVSN FFDGIQCVLSGVARGCGWQKIGACVNLGAYYIVGIPSAYLIAFVLHVGGMGLWLGIIC GLLVQVLLLMAITLCTNWDKEAANAKDRVFSSSLPSDLAT</aaseq>

Gene Sequence

<dnaseqindica>208..486#2631..3175#3350..3436#3552..3608#3719..3957#5847..5965#6081..6167#6263..6322#actagtacatgcaaagctccctaccacggtgccacccccaccccaccccacccctgccgccgcctactgatcacaaattcacaactcaattctctccacacaaaaacacacacgtaactacttacgcttaatcagtgatcgatcgagctggagtagctagctgacaagaggaggtacgtgtcgccggcgatcgatcgtttgaccgacatggcggcgaaggggagcccggaggaggaggccctcctcgccggcgtcggaggtgatcatcagctggtggagtcggatgagttggcgccagctgcagcggtggtgcgggaggaggtgaagaagcagctgtggctggccgtcccgctcgtcgccggcgcgctgctgcagaacgtcatccagatgatctccgtgatgttcgtcggccacctcggcgagctccccctcgccggcgcctccatggccagctccttcgcctccgtcaccggcctcagcctcctggtattaatacggtttttaattactcattcatcatcattttgctcatataattactagtagaaactagtactctacttcctcggccgtaaacatttctggagactttggcgtgaattaatgaggtacgtgaaattgaatgacgaaaagttctaattgattgaaaaaagaaaaatatgtggataaattaaatgagaggtggttgtgattggttgagatgataagaagcaaatgaagaaataattacacttaagacaaatttgaacctagctaacgcaattcatctatatatgtcgctagctgtagcaaattatgatcaacatcgttttagccaaattatgataaacatgaatatcgttttagtccatcatttagcctatagctgattataaaacatatataatcttattaatgaaatatattaattcataggtacattatatatgtggttattagcaacttaaaagttcactacaacgaaaaacaacatcaaaataagttataaaattatgatttaaaatttaaattttaactgcagttaataagttgaagagaaaacgaaacgcactagaagttatatctccagtctattttggttcatatatatctggatcaatataattcgtcccctttgttggtagagggatcgatcgacatttctccccacagttctatgattgggaagatcaagtgatcaaccactctatattgatcagtacgtgtcactataaaatcgtttgctctaattataatattgacaggagaactacttttaatttcagtgtacaactagtcttcttccaaggggaaaatttaattagtatttctttgtgaaagtggtgctgtctagctatgatttcgaggccccacctctgagtatattatatattttgttcagcatttttcgctccttttgaccgtagagaggacttttcactgaagagaggagaaagatcaatggtagtccaatgttaaatcatccagttgtcatctgcatgttttcctgcttagaacctttctgaacgtattaccagtaggctccatgattgttccaaatctaaaaaaaaaaatactaatatagcaagcatatggcaattaagtttgaggttgcatggtcttaccgaaggaattttatacctgctgcgctctgctgatatattttaggaaaattaaatagagcacggcaggttgaaactttgccaacaatttacaaatattgttctaaaaaaacaatttacaaatatttatcctgatatatatagtgctcatgacaacattttgcctttgaccaacaaattatattacaaaacgatgggatcatttccccctaggttactagaaggcactatatatgatgccatattttctataagaaatagtcaaatttttacactgtaaattacttacatttatactataatttttaataattatattgtaattttataatacatattgtataagaaaattaggactaaaagtaattttttatttacatagaagaagagataggagagttattaaaaatacttacacaatcacatagaaaaaaactgtgaaattaatcaagtaaaatagatggcgccatatctttaacaactgctataaatttgtgaatatcataccgaagacattgcatattatatctttgcgctgatataattcctagaggcgctagtaaagaaccgggcatctcagtcggtgcatctgtgatggagacgtacggcctattacaaaggtctcatctttaccgggccgaaaaaggcccgtcacagatgcagtatcttgagtcctaaggcctaggtaataagaattttggatggtgatgaattcacttataaatttatagggtagaactataattcaaagattggtatagttgctatacaagcaaatccgtgtcgcaattttgagttcaatttttccctttttttccctgaacaaacactcgtctcacatattttctctgtccaagactcttcctgttcaaatcatgatatttcgaatgaacaccttttccccttctacgtacataccgcgaatacatgcatcaattctgtcaaaagcaaaaatacaacatatacattgtttcgaaacaagcttaaccattttgaaattgaataaattccactgggcttcatgatcagctaggaatggcaagcgcactggacaccctgtgcggccaggcgttcggctcccggcagtatcatctcctgggcgtctacaagcagcgcgccatgctgctgctcaccgccgtcagcgtcccgctcgtcgtcgtctggttctacaccggcgacatcctcgtcgcgttcgggcaggacgccgacatcgccgcggaggccggcgcgtacgcccggtggatgatcccggcgctgttcgcctacggcccgctgcagtgccacgtccggttcctgcagacgcagaacgtggtgctcccggtgatggcgagcgccggcgcggcggcgctgtgccacctggtcgtgtgctgggcgctcgtctacgccgccgggatgggcagcaagggcgcggcgctgagcaacgccgtgtcgtactggatcaatgtcgccatcctggcggtgtacgtgagggtgtcgagctcttgcaagaagacatggacggggttctccatggaagccttccatgacccgctcagcttcttcaggctcgccatcccttccgctctcatggtctggtcagtgatcgatcgactcagttcacactcttcctcgatctgttgagaatttgatacttctctgaaagtttaaatccttctcttttttttttgaaaatttcgagcctttttttatgttgtgcaactcgatcgaagatactcgtgtggtgatgacattctgctctggcattgcagcttggagatgtggtcgtttgagctcattgtgcttctttcaggtattcttcccaacccgaagctagagacgtccgtgctatcaatcaggtaatactaaacagaaattgatcaccacacatttcgactgaaatgtttttgtgccatgccaaatagagacagaaaaaaaaacagtctgaaacatattcggttgcaattttgacagcctcaacactgctgctttcgtttggatgatcccctttggcctcggttctgccataaggtatacgtagcattcatcctcctagcttacactgcattgcagtcaacattgctcatcatcatcatcgtcatcagtgcctgtattatccatcatgatcttgcatgatgcagcacccgtgtctccaacgagctcggagcgggccggccccgcgcggcccgcctcgccgtccgggtcgtcgtgttcatggccgtctcggagggattggtgatagggttggtgctggttggcgtgcgctacatctggggccatgcttacagcgacgaggaggaggttgtcacatacgtggccaagatgatgctggtcatcgcagtctccaacttcttcgacgggatacagtgtgtcctttcaggtacacctgattatttctccttcctggctggatactaagttacacaagttcgtcctcacaatagccaagctgattagcgatgaatcatgtgtagagtgttttgctttctctccaagaattctatttaagatattctctgatttataataggctttaatagacggcgtaggagggtttcagaatatatttattatacataaatttcctcttttactgattgaaacggcacgttagcacaaagtatatgaaaactaggacttagggggggggggggggggttatggacgttacctttgtgttattgagccttctatagtttaaaatttatttttcttacatttaaagtgagtcatgactagatggctttttattttattttgtaacattgtagatttatatatgttttactccctccgtcccataatataagaaattatgcgtaagtcatggacagacaaaagcagtatatgcttatgaagcgatagaggatgatataatatatattgccaattaccctggctctttaccttgatggcatacatgctcattgcactttagatagcaatgtgttgtatagacacctcgttaatatttgtgaaccgacgtttggtggattggggtttgtaagttggagctaatacataggggttgagtgtgacatattgatatatatatagttagccctataagggctgaatacatttggatcagctgatatactaaaagcaacttaagtttaaactccaagattgaaaaggaaaagattgacatatatgccctctactcttgtttaatctatccttcagaacataaatactgtatgcaaagatcacatttaatctttttttatgataatgtattcactttaaatattctagatataattgcattgaaattatcactatatatgttagaattagaatcggggacatatccggtgaaaatgagctaagtgttgaaaactcgtgaaaatcatacctaaaagttttgtaaattcatgaaaaaatactagagataggtgtagatatgaaatacattctcaccaaatctcaagttcaaactcaacttcgtttaggagtaacaaaaaagacaaatttcaggtgaatagtaacatgacactattcacctgaaatttgtcttttttgtttctcataaacgaacttgagtttggagttgagatttggtgagaatgtattttatatctaaacctatctctagtattttttcataaatttacgaaacttttaggtatgattttcacgagttttcaacacttagctaattttcaccggatatgtcctcattagaatcactcgcaattagagtttttttttcaattttgtgacattgttgatctaaattaattatgtgtattaatgaagtggtatatgatgatatataatctacattagtaattattttcataatttatttaatattgttgggatggcatgcaaaaggtcaacatatgtctgaaaacaacatagaaaatattttttttcagaatgttactcacaatttgagttgttatttttcagtgttgtagatcaaatttaattaagcatattctctgaattgatatttgatgatatagtcttcattgtaagttttctttgcaatagttttattgtttttactagtcaaaatatagctaatatttgtcttgactattaatttaatcataatagaactacaatgatgtagaaggatagaaaattcaatatacggtttacaagtcatgattatcacataacattttatgaagttctgaaaattgatcatcaaagttttaaaagtttgaccgattcttatcctaaacatgtacaccaaatatttatgacctgtcggagtaataattttccgttcgtgaaatttacatatttgtgcaggtgtggctagagggtgtggatggcaaaaaattggagcttgtgtaaaccttggcgcctactatatcgttggcatcccttcagcttacctcatagcttttgtcttacatgtcggcggaatggtgcttactgaagaaccctcaagatcttttgtttgcctgaattttcatcaagttccttgttgcaagttgtttttggttgatgttatgagtttcaacaatgctgaatgtcttatagggtctatggctaggcatcatctgcggcctcttggtgcaagtcctgctactaatggcaataacactatgcacaaattgggataaagaggtgcatacatgcacttttttccctagctagccaatattatgttgctgctattttaagttcgagagtgaagtgtattcataattttgtatttacaggcggctaatgcgaaggacagggtcttcagttcttctcttccttcagatctcgcaacatgaagttagaggtgatagttgtgaaagcgtgcttgcagactacatgctattactaatcaggccgcattgatctagtttctcttggttgggtgtcgatcgtaaaatttagtatgctgatctggaagcttaaaacaacttgtgtatattgccacttttatatatatgctgccttgtg</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0494400, RefSeq:Os06g0494400