Os06g0519400

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Revision as of 09:20, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0519400| Description = Zinc finger, CCCH-type domain containing protein| Version = NM_001064276.1 GI:115468283 GeneID:4341162| Length = 506...")
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Gene Name

Os06g0519400

Description

Zinc finger, CCCH-type domain containing protein

Version

NM_001064276.1 GI:115468283 GeneID:4341162

Length

5066 bp

Definition

Oryza sativa Japonica Group Os06g0519400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:19897394..19902459

Sequence Coding Region

19897470..19897934,19898892..19898987,19899185..19899463

Expression

GEO Profiles:Os06g0519400

Genome Context

<gbrowseImage1> name=NC_008399:19897394..19902459 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:19897394..19902459 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatgcaaatcctctgcgagtgttgcaacagcgaccaccgttcttcctccactccgatggccaccaccacctcctcttccgcctccgatcccgccgccatttcgccgacgccctcgcagcaacatgccagcagcacggtgaagacattggatgaccggcggcctgctggcaccagcagcagcgccggcgagacggaaccgaaggcggcggttgagccgcaggagtacccacggcgacccggagtgccggactgcagctactacgtggagttcgggagctgcaagttcgggatgcgctgcctgtacaaccaccctgcgaagcatgccggcggttgcgacaagctggagcacccgcaacggcccggggagcacgactgcctccactacctgaggttcgggagatgcaagtacgggatgaactgcaggttcaaccaccctcccgaccgcctgcctcagcagcaagtgtattttccttggaaagcttgccactgccaccatagtgaaggaaaaagtgaagctgagcatgtaaagctgaactttcttgggcttccacttcgtcctgggactggattgtgctcatactacatgaaccgcggaatctgtaaatttggcagtaattgcaagtttcaccatccaaattcaggctcaggtcatgagaagtgggatggctctctccaaaccaatcaaatatcctcgggagtgaacatttactcggtccttgaccatggagaattaaatgagcaacctgttccatctaaagatgattttcaggtaagttttgttcaaaatattgtaggctttaatttctatatatggtgtgatcccgaacttgcaccatga</cdnaseq>

Protein Sequence

<aaseq>MMQILCECCNSDHRSSSTPMATTTSSSASDPAAISPTPSQQHAS STVKTLDDRRPAGTSSSAGETEPKAAVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLY NHPAKHAGGCDKLEHPQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWK ACHCHHSEGKSEAEHVKLNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPNSGSGH EKWDGSLQTNQISSGVNIYSVLDHGELNEQPVPSKDDFQVSFVQNIVGFNFYIWCDPE LAP</aaseq>

Gene Sequence

<dnaseqindica>77..541#1499..1594#1792..2070#cctctctctctctcaagcagcaagcaaaccaaattaactcctccaaccaagagacatagtacagagagatcgagctatgatgcaaatcctctgcgagtgttgcaacagcgaccaccgttcttcctccactccgatggccaccaccacctcctcttccgcctccgatcccgccgccatttcgccgacgccctcgcagcaacatgccagcagcacggtgaagacattggatgaccggcggcctgctggcaccagcagcagcgccggcgagacggaaccgaaggcggcggttgagccgcaggagtacccacggcgacccggagtgccggactgcagctactacgtggagttcgggagctgcaagttcgggatgcgctgcctgtacaaccaccctgcgaagcatgccggcggttgcgacaagctggagcacccgcaacggcccggggagcacgactgcctccactacctgaggttcgggagatgcaagtacgggatgaactgcaggttcaaccaccctcccgaccgcctgcctcagcagcaagtggtacgttcgttattagggccttctttgctcggtgaatataggctagctttatcatattctctagcttatccggttgatttttagaataatgtttgattattcaattcgtcttatttaaaaaattagtgcaaacatgctcaagtataagtcttacttaaacattattaaatgataaaacatgtcgcaacaaaataaaataaataacatttttataaatttattgaatagaatgagtgattaaacataatgtcataacatgatgacgtcatctatgaaaaatatttttaatgaagggagtatattcaggtatgctatataatgtttgtaaacatgccggtatgctaatgtttggacaacattcccttcaaaaaagattagtcaacgtttgatatatttttcatataaaatcagatgaaaacaaggtttgcataacagttttagaagagctcggaaaaacctataacgtctaatttcaagacattttcattaagatattcacgtgcccgaatatgtgtttggagtgctaggatctatttggataaaatgaacatttaaagttgtcaaactactttttgatagagacaagcttggtatatatcaaacattttcagttgacaattttcttatttaaagtaatccaggtcgtagtggagttacagttttctgataatttcgtccactaacattgtggtaacttgaaaatgactatataatattgtagtcgatagtttagttactaaatttgcaattctgtgaattcagtcagaacaaaaagggaaggatggaggaaatgcgagttctttacaaatcacaagcatcggctcaaaacatttttgtaaaaaaatcttcttttatattttgcacgatggcccatccctacattcagaaatcaatgtatgcataaatattacgtcattagaaggaagtattatttttcttaaacaaagtgtttttcagtattttccttggaaagcttgccactgccaccatagtgaaggaaaaagtgaagctgagcatgtaaagctgaactttcttgggcttccacttcgtcctgtaagtttttctgtacatcttttcttgtggggttatttccttcaccacaaagttatgttaagccgatctttttttagcaagctttaattctctttgtcttcttcattcatctcaacatggctcctttaatactgccatttcaatatttcataaattacaatttgattggtgaaaacatgatatatgtaattccgcaggggactggattgtgctcatactacatgaaccgcggaatctgtaaatttggcagtaattgcaagtttcaccatccaaattcaggctcaggtcatgagaagtgggatggctctctccaaaccaatcaaatatcctcgggagtgaacatttactcggtccttgaccatggagaattaaatgagcaacctgttccatctaaagatgattttcaggtaagttttgttcaaaatattgtaggctttaatttctatatatggtgtgatcccgaacttgcaccatgaaatatttgacatgttaaatatagacctgctaaatgtttgggttaatatgcaattatttgcattgtctatatggttgctattataaccctattcatccaaaacattggtaatgccattaattacttacctaacggttggcactaagagatcgatttggcagtacatactcaaacaaaagagcccctttctcctagtaggcaatttccatgcaaactgaactgtcttgaagtttgatagtcgaatactacaatttgttggcttaattcaaacatgttttgagtgggaagcattagccaatgcctatgatatacttgtagtgcataacaagggtagacatgaacaggagtaaggtcggatagcagtggtttgaggagcaagagctgcaatagctcatccaatgggagagccaagcatgaaaacgagttgagacttgagacaatacttgatactgcatcattatttatgtgtgcaactcgtgttatattatcttcttatatagttgatacctagtaaagggcatttacttctataaagcaagacatgcaagaagccacatcatcaacaattttaagacatcagatcacattagtacaaagataacaaccgtttgatcaagaagctacttattcatccaattcaatcatttattagttatacaatcacctccctttgctccacctcatagtcacacatagcactgttatatattttgtgcataactcaaattattgttaaagatgtgtgttttattttactatgcatgattagatagcatataattattagttatcgttacctgaatcaattttcataaaaaaaacttgaatgaagcagagagatgcaaattgtctaactacaacaatacccatattgcacatgaaaataatattcatatattatagcaatacacaatgacgcttggaaaaatgaagcatgaattgtattatactaacataagatatatataaagccacattattatatattttgtatatatacagagttgcacctaaccatttaaaactacgattttgtttaacgataaaactaaaaaacccgcggcaagacgcggggtgccaactttttatgtggtttgtaccttttgccatgctgattaattttgtagtgatctgctgcagcgtgggaattcatgttttcagcctgctgagcaaatccgttacacaagggatcaacttctcaaactgcgcgaggtatattaattaagttcttgttgactggttgtaatatattttacagattaactcattgtataaaattacactaattattatactttactcataatctcacaatagttaataaacaaaatattcatgtcattagtataattcgtcactgtaaaacatcttttatctacttttgatattcaagggcgaagccaggaaaaatggtcaccggggtctactaactaatgatactaacaacagatctatagcttgcaatgacctaagactatgcataagatagaacaaaatcaacagtgccatattatgataaaataaagtctattgctctagtggttacctcttacatgttacaaatcttgtatacggctcctatcctccatcttgtgaaagccaacaaccacatcattatttggaattgaagctagcatttccggttcgacgaaacatatggtacaatcattcataaattgatcaccaatacgattccgtagaatttgctccaccacaattctcattatcaccatggggggtatttttgttttcaagaatcgatccatcatagtttgcatgcctattaaatagttatagaacaagattgatcaggaacacaattacacaatatagacaacaaatgcataagcagcaactcttagcaaaaccactagtttcttaccatccattatgctgggaggaaaaaataattatgaatatataattcaatcctcctcctcgttcacgaccatcaggcataaggccatgtaacagaagtctgaataaattgaaaagtgcatatttcagaaccctaaattcctaagattaggtttcagagatgagaaaacaagaatttgtgatagtccccggaagaaaaaaaattgggatagggttacctacttacctaatcaaacggcagctcggctgctcacgcttgccgtcgcgtgatcacctaatcctagttcttgatgtcttcggtctttgctgattcgcccgttcgccgcccgtctagccatcccggcgtctcgcccgcccttgcctagatgtgactcaagaagacctgaagacgagaagtcgagactccataattaccatggaggaatactagaatacgttatcaaaacagggattttgtggagactagtggagtagtgggctgccagccttgtgggctcaaattcaagcgttttctcattacgtgggctgggctgacctagcttagatattaatttgtttgttgtgtcattactgctaaccacaagtggcttcaactaattaattctactggggtctaatattttttttgaccagggtcagcgacggtaaaatagagggggtataacatgcttgttaaaaatcgtcggggttagtagaccccgatgctttgctgtggcgtcgcctaatgatatttatgacatgactattatccttgaagtatttgtgtattcgttgcactactaaagaaaatgtttgtgcggatggccaataaccagtttacatgggtgttttctgactcgcatgcaactccgtgccggaagaaattgagggtttccatgggtggcacccttaaggacacgctagtgaaaattaattttctaatttttattcttgtaggtgcaaaaaaactcgaaaaaatgttttgtatttcggtatgcatctatacacagttgggcgtccagggtcacaagtcatgcaattttatgtgtgcgtgcaatttataggattagaacctaggtactctgattcattcagtctgtaatcttcttactatctcacctattttgaagtttttgttgt</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0519400, RefSeq:Os06g0519400