Os06g0520600

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Revision as of 09:20, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0520600| Description = Similar to Zinc finger CCCH type domain containing protein ZFN-like 1| Version = NM_001064277.1 GI:115468285 GeneID:4...")
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Gene Name

Os06g0520600

Description

Similar to Zinc finger CCCH type domain containing protein ZFN-like 1

Version

NM_001064277.1 GI:115468285 GeneID:4341164

Length

5619 bp

Definition

Oryza sativa Japonica Group Os06g0520600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:19978561..19984179

Sequence Coding Region

19978724..19979101,19979696..19979791,19979990..19980199,19980851..19980916,19981202..19981303
,19981439..19981633,19981719..19981837,19981970..19982057,19982154..19982504
,19983416..19983946

Expression

GEO Profiles:Os06g0520600

Genome Context

<gbrowseImage1> name=NC_008399:19978561..19984179 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:19978561..19984179 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcctcaggacgatgactggttctgggggcgcccgactcccgtcgtcgtcggcgacggcgagacgacgtcgaagccaaagccgccggtggcgggaaagacgaagaaggtggaggagcagcacccacggcgaccgggggagccggactgcagctactacgtcaagttcgggagctgcaagttcggcatcagctgcgtgtacaaccacccggatccgaggccgcagcatggcgccgacgacaagaagccggccgagcagttcccgcggcggcccggcgagcccgactgcagctactacgtcaagttcgggagctgcaagtttgggatgaattgcaggttcaaccaccctccccgcatgccagtgccaccacaacaagagtatttctctgggaatgcatgccactgccaccatattgaaggcaaaagtaaagttgagcaagtaaagctgaacgttcttgggcttccacttcgtcctgggacagggttgtgctcatactacatgaaccggggaatctgcaaatttggcactaactgcaagtttgaccacccagatccaggctcagatcatgagaagtgggtcgtttcaagtaatgccaatcaagtttcctctcaggtgaacatttactcggtgcttgaccatggagaatcgaatgagcatacttttacctccgaagaagtccatcagccagggattccaagttttcaccaacgaatcagttacacaagggaccaacttctccaactttgtcagaatgtcgaagtgcccaaggacatcttaaaattttgtcaagatattaatgttgaactgaatggtgaagataaaatttcgggatttggagcagagaaagatcatgtacaaactccatcatataaacggtttgacgcgacagacagccgtgactggcattcatggtctgcacaaactaattgggaacagaaattttgggacaacttctctgaagcaaaagaaccctattctttaggttggaagcaagagaaatttaacaagcctgaccaatcaagcttccactttgattctaaagatcagtggttaaaatttataaagtgtacaccctgcaaaagcactttaattaaggctgaagtccctttgtcaatccagagaggcattatctctggcaaagatgaagttctgaaaacattgaaaagtatactaaacacattttcaccaaagatgttcgatcttcagaagggccagctaatagaaacaagaatctctagcgctgatattttgaaggatgttattaatcttatatttgaaaaggttgttgctgagccagccttctgttcgacgtatgcgcaactttgcacatatctaaatcaaaacctcacaccattccctcctgaagactgtgattgtgaagaaattacgttcaaacaagcactgtcgaacaaatgtcaagaaatattcgaaagtgctcacaccgtatgttctgagattggcaaattgattggacaagaccgagagatggagcaacgggataaagaaagggtagtgaaacttgaaacactgggaaatattaatttcattcgagccctgctcaagaaaaagttgatcacaaataagataatagatcacattgttcaggcagtgatggattgttgtaagtttcgctttgaaccacttggaaaagttgatttgctaaatataatatttgaaggcatgctggattcagattcagcaggtgatgaatctaatatttgcgtcaatgctatgattggtggcaataaatcttccatagcttcaaatgatgtcgagatgactcgtaagaatgtcaataggcaaaatgaagaggcaatattacaaaaatcttatgatgaagtcccaaataacaaaatggatcctcagaaaaattatgcagatggagcaatcagttatctcattgagaaagagaagccaactaacttagaatcatctgtgaggatctgtcgaggaggatgcagtatttcagagataatggagttagttgttgatgcaggagctgtggaaggcagtgatgagcatttcatggctaccttattatttattaaacctgaatatagggaaatatttcttacccttgatacacgtgaaggaagacttgggtggctgaaaaggatgtacaaggtgaaggaataa</cdnaseq>

Protein Sequence

<aaseq>MPQDDDWFWGRPTPVVVGDGETTSKPKPPVAGKTKKVEEQHPRR PGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPDCSYYVKF GSCKFGMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQVKLNVLGLPLRPGT GLCSYYMNRGICKFGTNCKFDHPDPGSDHEKWVVSSNANQVSSQVNIYSVLDHGESNE HTFTSEEVHQPGIPSFHQRISYTRDQLLQLCQNVEVPKDILKFCQDINVELNGEDKIS GFGAEKDHVQTPSYKRFDATDSRDWHSWSAQTNWEQKFWDNFSEAKEPYSLGWKQEKF NKPDQSSFHFDSKDQWLKFIKCTPCKSTLIKAEVPLSIQRGIISGKDEVLKTLKSILN TFSPKMFDLQKGQLIETRISSADILKDVINLIFEKVVAEPAFCSTYAQLCTYLNQNLT PFPPEDCDCEEITFKQALSNKCQEIFESAHTVCSEIGKLIGQDREMEQRDKERVVKLE TLGNINFIRALLKKKLITNKIIDHIVQAVMDCCKFRFEPLGKVDLLNIIFEGMLDSDS AGDESNICVNAMIGGNKSSIASNDVEMTRKNVNRQNEEAILQKSYDEVPNNKMDPQKN YADGAISYLIEKEKPTNLESSVRICRGGCSISEIMELVVDAGAVEGSDEHFMATLLFI KPEYREIFLTLDTREGRLGWLKRMYKVKE</aaseq>

Gene Sequence

<dnaseqindica>164..541#1136..1231#1430..1639#2291..2356#2642..2743#2879..3073#3159..3277#3410..3497#3594..3944#4856..5386#tgggactagctgcatttccttctcttctaatgaccccgttcatggttgattagtttgagattatcatcaattctctgtttgtcggtggagcacctgcagcacctccgacgaatccgccgctgcttcgccgtcgcgtgtgctggagcggctcgccgccagctccatgcctcaggacgatgactggttctgggggcgcccgactcccgtcgtcgtcggcgacggcgagacgacgtcgaagccaaagccgccggtggcgggaaagacgaagaaggtggaggagcagcacccacggcgaccgggggagccggactgcagctactacgtcaagttcgggagctgcaagttcggcatcagctgcgtgtacaaccacccggatccgaggccgcagcatggcgccgacgacaagaagccggccgagcagttcccgcggcggcccggcgagcccgactgcagctactacgtcaagttcgggagctgcaagtttgggatgaattgcaggttcaaccaccctccccgcatgccagtgccaccacaacaagaggtaataatgtcaaacacatgcgtattatattggtaaaaacctttggaagaaaaatacttgtttctttccgtcgtacaaaattattctgaagcaaaatcaagattacttctctcctaaaaaaatcaagattattttctggcgtcagtgagcagccaagaccctagtatttttttctcagcaacaaacaaacgtagttacagtgaacgttttcccccctaataactatgtggaatatgctatagctagctaggtagactcttgttttatttcgttatctctagaagtcgaccaggcagttagctttggactagttgggcttgggccatgacgagcaatggactagtaaagcttatggtccaggaagagaggagaagaaaaaactagaaaggggaagaagagaagatatgagagtggtttgaacttgaatcacaaatagtgaccccaaaagaattttttgtataaaatcctaattttcaagattttacacataacccattcattaattaattacttccgcaaatcaatttatgcatgcatcacattaatacattgtttgttaggagtattctttatctcacagaaagtgttttttagtatttctctgggaatgcatgccactgccaccatattgaaggcaaaagtaaagttgagcaagtaaagctgaacgttcttgggcttccacttcgtcctgtaagtctttctaattcttttcttgttgggtttatttcttctgcacgcaattatgttagctaggccaatcatttgtaacaaagctttctttttgccttttccattgatcacaatatattagggcattgcatactactgtttaattcaaaaattactattttgttggtgaaaacatgatacatgcatgtaatccttcaggggacagggttgtgctcatactacatgaaccggggaatctgcaaatttggcactaactgcaagtttgaccacccagatccaggctcagatcatgagaagtgggtcgtttcaagtaatgccaatcaagtttcctctcaggtgaacatttactcggtgcttgaccatggagaatcgaatgagcatacttttacctccgaagaagtccatcaggtattatccagttgaaatattgatggctgtctttgtagaaaaatatagtcacacttatagtaccacttagtttcattatatctaacattgaacatattagttccattatatctaacattgaacatattttggtagtttctttgttgtgtgttaaaaatattactttttcttacctataaattaggtaaaaattaaataagtttgacctaaaaaaatgtcaaaatgacttataatatggatctaaggtaatactcgctaattgttcggatttgatgccaatattttccaattctacacatttgatataacactaacatactaaaacattgctgttgccaatacttgcctgtgttgatttgatagggcaccacaccaaaattgccatattttttcagcttgttgtcaatccatgcaaattgagcagtcttgaagtttgatatgagaattgtcttggattaattgagaaatgttgagtggtaaacattagtcaatgcctagcaaacatttgaagtgtgtaacaagcgtaaacatgaatcggattgtgtataaggtagacaataatgataatgtgtgcggcaagagatattttcccttaaacaaatattgttatagtatctttgctatgcttacttttgcattaatctgctgcagccagggattccaagttttcaccaacgaatcagttacacaagggaccaacttctccaactttgtcaggtataagttctgggcgactaatatgtttcactcattttctctcttaaaatttaattgctgtattgtgcaaattatcgtaagtaagacggataacattcttcaagccattacaaagtatcataattagttgttgtgaaaattccatcatattttttttatatttatcaatagatgactgttatcccctatgtattgctgtttttcgctgcagaaatgttcaagttctttacgcaaacttgtatggccttctcacatattattaatgtatgaattatgtctatgcagaatgtcgaagtgcccaaggacatcttaaaattttgtcaagatattaatgttgaactgaatggtgaagataaaatttcgggatttggagcagagaaagatcatgtgagcatccttcccttctcatatgtcatcatggcagaaatcgtttgtgctgctctgattaatgttcctcaaagatgcaaagtcttgtatttcatagtaagtacaatgttgcgtttttttgggtatatctgttaggtacaaactccatcatataaacggtttgacgcgacagacagccgtgactggcattcatggtctgcacaaactaattgggaacagaaattttgggacaacttctctgaagcaaaagaaccctattctttaggttggaagcaagagaaatttaacaagcctgaccaatcaagcttccactttgattctaaagatcaggtatcttaaaaatacaagtgtgttagtaaattgttatcagatctgaattgtacaatatggtcttctcaccttgtctctcaattagtggttaaaatttataaagtgtacaccctgcaaaagcactttaattaaggctgaagtccctttgtcaatccagagaggcattatctctggcaaagatgaagttctgaaaacattgaaaaggtattatttcatttaggaattctgttcttgtttcattagtaaagcattttcccatcaattgcatattcaaaaagtgtattttgtttatctgtttttgtttgcatatttttatttgttgtttttgttaaacagtatactaaacacattttcaccaaagatgttcgatcttcagaagggccagctaatagaaacaagaatctctagcgctgatattttgaaggtttggtttaataaaaagcaaagttatttttattcaggcagccttcttctatgttttggactgatgttgagttgtttctactatgcttttactcaggatgttattaatcttatatttgaaaaggttgttgctgagccagccttctgttcgacgtatgcgcaactttgcacatatctaaatcaaaacctcacaccattccctcctgaagactgtgattgtgaagaaattacgttcaaacaagcactgtcgaacaaatgtcaagaaatattcgaaagtgctcacaccgtatgttctgagattggcaaattgattggacaagaccgagagatggagcaacgggataaagaaagggtagtgaaacttgaaacactgggaaatattaatttcattcgagccctgctcaagaaaaagttgatcacaaataagataatagatcacattgttcaggtattcatatgccgccctccattgctagaacgttgcctgttaatgatccttttttaggtactgaaagttttattgaactcagccaaacaatttgaggacactccgggcctctgcaccactacactgcacacagcgaacacaccctccaacgcaaagaaaaacagaacaaacccaaatatctgttaatgatctggcaatttatgcagttaattaatactattcttagctgcttttaagatgatatggtgaccatgaagtacataatctttcagaaaaatattttaatcctatttatatatcctttagagctatttacctaaaaaatgtccacaggccacagatatataatccatttgtaacgtccagctatcaaaattaagcatattaattaaagatgttatgaaaagatttgccatatattatttcaatatggttgatcagatttcgtggtacttggtgccttttaagttataaaccagcaacatcgaatacatgaaaaccatgatttgtgcagagttttaccttgacaagcactatcataatctcataaagttttcctcgcaaaaaaaataatctcataaagttatttgattccatcaacttgttgtaatatatatgtctttcttacatgtcaaatagttagtttttaagtactacagttatcttttttatcaaacttatgtatgatatcttcttggaattatatatgtatatatattttttcaacttcagtatttatgaaataatgttttttgaaattcaatgtcatgtttgtgtttggtgaattgatttaatatattgcactccgatcagctattagatgggactaggaatagcattttttttcatttacacagcttgaagtatatatatatttactcaaccatgttatcctttcaattgttttgcaggcagtgatggattgttgtaagtttcgctttgaaccacttggaaaagttgatttgctaaatataatatttgaaggcatgctggattcagattcagcaggtgatgaatctaatatttgcgtcaatgctatgattggtggcaataaatcttccatagcttcaaatgatgtcgagatgactcgtaagaatgtcaataggcaaaatgaagaggcaatattacaaaaatcttatgatgaagtcccaaataacaaaatggatcctcagaaaaattatgcagatggagcaatcagttatctcattgagaaagagaagccaactaacttagaatcatctgtgaggatctgtcgaggaggatgcagtatttcagagataatggagttagttgttgatgcaggagctgtggaaggcagtgatgagcatttcatggctaccttattatttattaaacctgaatatagggaaatatttcttacccttgatacacgtgaaggaagacttgggtggctgaaaaggatgtacaaggtgaaggaataagtgttggaccttagttcatggattcttgcctattttctactcttatggtgtgcctactcatgaactatttacatgtgatttattgtgtaatgctacctaaatttattaacatcctacatttccatttgagtttgctttaagtgagatgaattcctatgtaattggtagtatgtacagtgtggcctatcgagttgtttcgctagagaatgcaattattaaatggtgttgcttgt</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0520600, RefSeq:Os06g0520600