Os09g0509400

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Revision as of 07:31, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0509400| Description = Conserved hypothetical protein| Version = NM_001070164.1 GI:115480070 GeneID:4347533| Length = 5344 bp| Definition ...")
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Gene Name

Os09g0509400

Description

Conserved hypothetical protein

Version

NM_001070164.1 GI:115480070 GeneID:4347533

Length

5344 bp

Definition

Oryza sativa Japonica Group Os09g0509400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:20423337..20428680

Sequence Coding Region

20424555..20425742,20425841..20426092,20426486..20426566,20427495..20427636,20427717..20428153
,20428489..20428545

Expression

GEO Profiles:Os09g0509400

Genome Context

<gbrowseImage1> name=NC_008402:20423337..20428680 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:20423337..20428680 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggtttgcctcaggttcctgcaatcaaggaggaagtgcttcctacaatgagtgcatctcttattgttcgtcctcattttgcggggaatagcacctgtcatttgggtaagcttcctgcagaaagctcaagtaacagggcatctccatgctcatacatcagtgatttcaagagaaatgatgttttagattctttgaatggatttgatggcaattttagagccagccatgctgcttatgggcctgcaggcttccaaggtctaaaacctgatacaggggatgtaggttccagatcaggccctaaattgggatcaaatgttcagatgcctgcaatgaggattgttggctttgaatcaggttttgctaattccactggaggtcctgatacgatggtagctgacaatacggattcacctttagttattgataattgccattcattgattgaacagcatgggcctcatgcgaggaaaagggtgttgtcgcctttgaacaatgcgctccctggacatttccgaggtgatgccctgaatattggttctggtgatgccaaaattcagcattctgattgtgctaggagactttatacttctggctttcaagatcgtaaaaaggcaaatactgcaattcttgattcttttgaggcacctacatggccagcttcgagatactccaactggagtacagagcagggtgtcgataaatttagtggtagtacattcactgatggtcctttgcttgagagcagggagtcatttccttgttcagatcacctggaagctcttgaaagtgttgctgttccacttgcaaaattggcacatcctcctctgcttaatctgtctcctcttggcccaacatggatgcatggaacaaatactgtaggatctcatggagaatcattgagagaaactgaaggttcaacctgtgaagggtattcagaaggtcatggtaggtcaaggataagagatgcgtttgaaaaaactaatatcttacatgatgactttgatatgaggatccctaagaagagttcagatagaaaatctcaaaactggggcccggaatctgcctctgtatccccacgcattggatgtattcggagtattggtctccttcctgtacgaaggtcgttaattggctcttttgaggaatctcttttatctggtcgctattcctgtggaaaagacaatcagaatattgacggtttccttgctgtcctgaatgtgactggtggtaacttctctcccccaactcagaagcttccattttcagctaccagcattgatgagaacagctccttactctactattcatcgatcgatcttgtggggaggctgcctatgagcagtagcaaaagcccaaagctcaaaagaagcctgagtaatcatgattcacgatcagcgaagagtcggttacgtatcccagttaaagggcgtgtgcagctggttgtcagtaacccagagaagacaccgctacataccttcttctgcaactatgatttgagtgacatgcctgctggaaccaagactttcatgcggcaaaaggtcactctgttccctgtttctccctctaatcaaaagaaagaaggaagcaaggccaatgaaacaaaggtcgagtcagtccagtttgggagtgaacttagagaatgcggcactctattttctgaatgctgtagaccagggcagaactgcaacttgatcgatgactcggaaaagggcggccgcaagaacatgacatgttgctctatggagtgtgacattagagaatcaaatgactctagctctctagaaacttcagaaaatggcagtagtaccaatgtttgctgttgtcaatcagacacatttcccttaggtgaaaagaaatactgctgtagatcgtccaagatcaatgatccagctggaggtgctcttcgttatgctttgcacctacgatttctgagcccatttgccaagaaaccgtcaagatctatgcagcgtagcaaatctgatgtatcatcagaaccatacaaccatagttcagggcctgaggaacacagacgattctatctctacaatgatgttagagttgtctttcctcaaagacactcagatgcagatgaaggcgagctgcgggtcgagcacgacttccctgctgatcccaagtacttcgacataagcaactga</cdnaseq>

Protein Sequence

<aaseq>MGLPQVPAIKEEVLPTMSASLIVRPHFAGNSTCHLGKLPAESSS NRASPCSYISDFKRNDVLDSLNGFDGNFRASHAAYGPAGFQGLKPDTGDVGSRSGPKL GSNVQMPAMRIVGFESGFANSTGGPDTMVADNTDSPLVIDNCHSLIEQHGPHARKRVL SPLNNALPGHFRGDALNIGSGDAKIQHSDCARRLYTSGFQDRKKANTAILDSFEAPTW PASRYSNWSTEQGVDKFSGSTFTDGPLLESRESFPCSDHLEALESVAVPLAKLAHPPL LNLSPLGPTWMHGTNTVGSHGESLRETEGSTCEGYSEGHGRSRIRDAFEKTNILHDDF DMRIPKKSSDRKSQNWGPESASVSPRIGCIRSIGLLPVRRSLIGSFEESLLSGRYSCG KDNQNIDGFLAVLNVTGGNFSPPTQKLPFSATSIDENSSLLYYSSIDLVGRLPMSSSK SPKLKRSLSNHDSRSAKSRLRIPVKGRVQLVVSNPEKTPLHTFFCNYDLSDMPAGTKT FMRQKVTLFPVSPSNQKKEGSKANETKVESVQFGSELRECGTLFSECCRPGQNCNLID DSEKGGRKNMTCCSMECDIRESNDSSSLETSENGSSTNVCCCQSDTFPLGEKKYCCRS SKINDPAGGALRYALHLRFLSPFAKKPSRSMQRSKSDVSSEPYNHSSGPEEHRRFYLY NDVRVVFPQRHSDADEGELRVEHDFPADPKYFDISN</aaseq>

Gene Sequence

<dnaseqindica>1219..2406#2505..2756#3150..3230#4159..4300#4381..4817#5153..5209#ccggaggggagagaaaatccatggaatccgcctatttaaccatgagaagggagaagcgaagataggagagagaagaacaccaccaccaatccaccatcacgaggaggaggagaagagaagacgcgcaagcgaaatccaggggaggagggcgagcgagagagagagagattctcgcggcaggaaatggcccattccgcttgctgctggtaattttgcctctctaggcagatgagatgagatgagacccccgcgtgattttttttttgtggagatgatcggatcgagctcgcccccctcagattgtagagatggcaaaccgcgcgatttggcggttattgggagccacgattgttgtttttttgcgcccgatttcgtgattttggttcgcgatggccattcgtttgcgcttttctgttttgttttgagatggttggggggtgggggatctcgggggggggggggggggggtagatgcgattctgtttcttcgtgtgttctgatcatcgacgccgcgatcgctctgggattgcggttgatttgtccgatttggggcgcgtcgggtgatagctgccaagggattttgtatgaacagcggtagatttcagacaatgtagttctgtagcacttcttaggagcttgggataactttatggttagcgcattgatgcctcatttatcaaatcttcattgcgccacaactcaatgttgatgtgaaatggatgtcttattttttgctctgcattgcatcatgttgatatgctgatagcctgtttgctcttttgtggttgatagttaatgctgtcatgttcattgtgctagagaaattattgaaaagcttatttaacagtgtgcggtgacatcctccgatttgtgcttgcaggactctgatctgatctattggaatggttcatcccaggttccttgttgcttgttcaggctccaaattgtgcttcatctccaattgttgcagtaactattggaacatgattggtggtgggatggtgaaatcattagtgctgatggggttcgattcagaagccacattgtagttttagccttcttgtgtcatcatagtttagctgattattactggaacaattgctagagactttgttgctgaaaataagaggctgaaatggatcatggtaaaatctgaataggaacaaagtgtgggcaagaggaaaattggtttccttttgctggagtaactctagtgagatgggtttgcctcaggttcctgcaatcaaggaggaagtgcttcctacaatgagtgcatctcttattgttcgtcctcattttgcggggaatagcacctgtcatttgggtaagcttcctgcagaaagctcaagtaacagggcatctccatgctcatacatcagtgatttcaagagaaatgatgttttagattctttgaatggatttgatggcaattttagagccagccatgctgcttatgggcctgcaggcttccaaggtctaaaacctgatacaggggatgtaggttccagatcaggccctaaattgggatcaaatgttcagatgcctgcaatgaggattgttggctttgaatcaggttttgctaattccactggaggtcctgatacgatggtagctgacaatacggattcacctttagttattgataattgccattcattgattgaacagcatgggcctcatgcgaggaaaagggtgttgtcgcctttgaacaatgcgctccctggacatttccgaggtgatgccctgaatattggttctggtgatgccaaaattcagcattctgattgtgctaggagactttatacttctggctttcaagatcgtaaaaaggcaaatactgcaattcttgattcttttgaggcacctacatggccagcttcgagatactccaactggagtacagagcagggtgtcgataaatttagtggtagtacattcactgatggtcctttgcttgagagcagggagtcatttccttgttcagatcacctggaagctcttgaaagtgttgctgttccacttgcaaaattggcacatcctcctctgcttaatctgtctcctcttggcccaacatggatgcatggaacaaatactgtaggatctcatggagaatcattgagagaaactgaaggttcaacctgtgaagggtattcagaaggtcatggtaggtcaaggataagagatgcgtttgaaaaaactaatatcttacatgatgactttgatatgaggatccctaagaagagttcagatagaaaatctcaaaactggggcccggaatctgcctctgtatccccacgcattggatgtattcggagtattggtctccttcctgtacgaaggtcgttaattggctcttttgaggaatctcttttatctggtcgctattcctgtggaaaagacaatcaggtccgtagaatttatacgctcctaatttagcttttagtggtgtaccataagttgatatttttcgagtgatgccagttgatatttctcctaaagtgcagaatattgacggtttccttgctgtcctgaatgtgactggtggtaacttctctcccccaactcagaagcttccattttcagctaccagcattgatgagaacagctccttactctactattcatcgatcgatcttgtggggaggctgcctatgagcagtagcaaaagcccaaagctcaaaagaagcctgagtaatcatgattcacgatcagcgaagagtcggttacgtatcccagttaaagggcgtgtgcagctggtaccatattcttgactttgagatttgcattaattcactgtattttgctcgattgttcatgatgcattggtgtgtatatatgttagtgcatatgcatgtgggcgacatgcatatgcatgtaccaattatgcaccacaagtctagttatttatcatgggatatttactctcataccattatgggtactggggaagctatatttgtaatgatacttttactactctgcatcatgtctcattttatgccctcctgtcatggatagctttctttggacttaattgcttattctcaaatggttcttccattatttagtcttttaaaagatttgttgaattgtcatatgcttcgatgatgtgtctatttcaccagaagcataactcttgactttgacaggttgtcagtaacccagagaagacaccgctacataccttcttctgcaactatgatttgagtgacatgcctgctggaaccaaggtatgagaaattgagaattgttatattacttttctttttgcctcatagacttatacgctggtggtaactgcaaatgtttctgcattgtcttggagttcctatgatggcatatttataattgcctatatggacaatgctgccagccatctaattcatgctggacacatagatgtgctttacaccatccatgaacttcttatttctggttgtaaaggtctgaccatttcatgccattggtcttacctggaggtgataatagaagtggaaaaatagaagtcatctattagtttgtactgaagcaacactaagcatttagtaattaatgatcctgtttgtagccacaccaccgggtacatgtgatttttctagccgcacaattttgctattcgcaatatattttttgactggtttgcaaagtttggagggatttctggtgttcttaagcagttaccagcaaaaaaaaaaaagggagaacgggcagtggaatggttcttattgttggatagtataggagaggggaatactgcgtaacatgggacgatagtattgagcctcagggggccggtatatataggagtacatggggaggagataaggaaggattacagatatggaaggagtctacacaaatcaatcctatcataatatgactctaactagtaactaccatatactctaacacttatttgtcctaaatggtttcttgaaccctgcttggaacagtactgcttcacttggcaggataagaactatctcatcgtgcatgaaagatgccattcaaaagtaatgccagatgcacgtacggtattgtctgtttagaaggaacaaacataagatgtctacgtttacggttcagattttatcgttttatttctttattttttttctcctgaggtcatcttatttctgttattgtaaaatgggacagactttcatgcggcaaaaggtcactctgttccctgtttctccctctaatcaaaagaaagaaggaagcaaggccaatgaaacaaaggtcgagtcagtccagtttgggagtgaacttagagaatgcggcactctattttctgaatgtaatgtagccattacctgtgatagctaaatccaaattttagagtttataaatactgacaaattgttgttgactatgcaggctgtagaccagggcagaactgcaacttgatcgatgactcggaaaagggcggccgcaagaacatgacatgttgctctatggagtgtgacattagagaatcaaatgactctagctctctagaaacttcagaaaatggcagtagtaccaatgtttgctgttgtcaatcagacacatttcccttaggtgaaaagaaatactgctgtagatcgtccaagatcaatgatccagctggaggtgctcttcgttatgctttgcacctacgatttctgagcccatttgccaagaaaccgtcaagatctatgcagcgtagcaaatctgatgtatcatcagaaccatacaaccatagttcagggcctgaggaacacagacgattctatctctacaatgatgttagagttgtctttcctcaaagacactcagatgcagatgaaggcgaggtatgcagccctacagcagctaccctgttcttgtttctttctacatcagtaggcttaagtaattctgaccaatagcattgctagcatgtaggtttcagtaattctgaccaataacatagatagcatgtaggtttcagtatttcatatagataaagtttctcagaactgttttccttatcctaatactatgatgcataactctttcgcatgttcccaagaaaaaaaagactttcttgtgccctttctagaggagagttagtttatttgtttatttatttatatatttattttccctcaactctgttttctctaaaggacattttttttccctgcagctgcgggtcgagcacgacttccctgctgatcccaagtacttcgacataagcaactgatatttactcgcgcacttcacatgaaatctgtatatatcataccctcattaacccgtccatcaatcccttgtgttcataaacattcacccatttgtataggactaaaatcttccaatgaaatacctcatttcgttc</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0509400, RefSeq:Os09g0509400