Os06g0531000

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Revision as of 09:21, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0531000| Description = Glycoside hydrolase, family 17 protein| Version = NM_001064317.1 GI:115468365 GeneID:4341204| Length = 4348 bp| Def...")
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Gene Name

Os06g0531000

Description

Glycoside hydrolase, family 17 protein

Version

NM_001064317.1 GI:115468365 GeneID:4341204

Length

4348 bp

Definition

Oryza sativa Japonica Group Os06g0531000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:20691081..20695428

Sequence Coding Region

20691081..20691126,20691319..20691910,20692882..20693347,20694851..20694904,20694935..20695049
,20695322..20695428

Expression

GEO Profiles:Os06g0531000

Genome Context

<gbrowseImage1> name=NC_008399:20691081..20695428 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:20691081..20695428 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaagacctcgctctgcgtgctcctctgcatccttgtcatctcagaggtggtgggggtgccgcggtgcgcggcggcgctggggataaactacgggcaggtggggaacaacctgccgtcgccggcgcaggtggtgtcgctgctggcgtcgctgcggatcggcaaggtgcggatctacgacgccaacccgcaggtgctggcggcgttcgccggcaccgggatcgagctcatcgtcacggtgcccaacgacctggtgcggccgatggcggcgagccccggggaggcgctgcagtgggtgtcctccagcgtccgcccctacttcccggcgacgagggtgacgggcatcgccgtcggcaacgaggtgctcaccgacgacgacgaggcgctcaaggcggccctcgtgccggcgatgcggaacctgcacgccgcgctggcgcagctggggatggacggctacgtccacgtctccacggcgagctcgctcgccgtgctggccacgtcgtacccgccgtcgcagggggcgttcacggcggaggtggcgccgctgatggcgcagttcctgcggttcttggccgagacgaacgcgccgttctggatcaatgcgtacccttattttgcttacaagggtgaccctactagggtgtccttagactacgcattatcaaacccataccacgtgggcgccatcgacccctacaccaggctgcagtacactagcatgttgtatgcacaggtggatgcagtggcgtacgcgacatcgcagctaggatacaacaacatcccggtgtatgtgtcggagaccggatggccatcaaagggtgacactgacgaggtgggcgccaccgtggagaacgctcgggcctacaaccgcaacctattgctccggcaggcggccggcgagggcacgccactccggccacggcagcggctagaggtctacctgttcgcgcttttcaacgagaacatgaagcccgggccgacgtcggagcgtaactatgggttgtaccagcccgatggtaggacgatggtgtacaacgttggactcatgcagcagagcacatctgcggcatcgctctccctcgccgcctccccagcaaccaagacggatgccaagaagaactttgctggtctatgtttcctctcatccttggccatcctacagtgcccaaatgcaagctcagcacaaaggaagagcttttggcacaagcaaaatggcttgactattgtggaccaaaagcctctccaagaccaaaggggagatgcaccatttcaaggaggcaaaaggaaaattaaaggtagcagctgttgccaagaggaaaagctggaggaggccactttgggatgtggaaggcactatcttggggatggcacagagttgtaa</cdnaseq>

Protein Sequence

<aaseq>MKTSLCVLLCILVISEVVGVPRCAAALGINYGQVGNNLPSPAQV VSLLASLRIGKVRIYDANPQVLAAFAGTGIELIVTVPNDLVRPMAASPGEALQWVSSS VRPYFPATRVTGIAVGNEVLTDDDEALKAALVPAMRNLHAALAQLGMDGYVHVSTASS LAVLATSYPPSQGAFTAEVAPLMAQFLRFLAETNAPFWINAYPYFAYKGDPTRVSLDY ALSNPYHVGAIDPYTRLQYTSMLYAQVDAVAYATSQLGYNNIPVYVSETGWPSKGDTD EVGATVENARAYNRNLLLRQAAGEGTPLRPRQRLEVYLFALFNENMKPGPTSERNYGL YQPDGRTMVYNVGLMQQSTSAASLSLAASPATKTDAKKNFAGLCFLSSLAILQCPNAS SAQRKSFWHKQNGLTIVDQKPLQDQRGDAPFQGGKRKIKGSSCCQEEKLEEATLGCGR HYLGDGTEL</aaseq>

Gene Sequence

<dnaseqindica>1..46#239..830#1802..2267#3771..3824#3855..3969#4242..4348#atgaagacctcgctctgcgtgctcctctgcatccttgtcatctcaggtaaataatataatacatatataccgctaataaaaattgcggcagcgaaccagacagttatctaacactatcggaatttattttttatttttggccgaatcccgatcgtcaaaaactactcgttataagttgatcgagtatattaataatataaatggttttatagaaatgtttgggtgtgtcgccgtgcagaggtggtgggggtgccgcggtgcgcggcggcgctggggataaactacgggcaggtggggaacaacctgccgtcgccggcgcaggtggtgtcgctgctggcgtcgctgcggatcggcaaggtgcggatctacgacgccaacccgcaggtgctggcggcgttcgccggcaccgggatcgagctcatcgtcacggtgcccaacgacctggtgcggccgatggcggcgagccccggggaggcgctgcagtgggtgtcctccagcgtccgcccctacttcccggcgacgagggtgacgggcatcgccgtcggcaacgaggtgctcaccgacgacgacgaggcgctcaaggcggccctcgtgccggcgatgcggaacctgcacgccgcgctggcgcagctggggatggacggctacgtccacgtctccacggcgagctcgctcgccgtgctggccacgtcgtacccgccgtcgcagggggcgttcacggcggaggtggcgccgctgatggcgcagttcctgcggttcttggccgagacgaacgcgccgttctggatcaatgcgtacccttattttgcttacaagggtgaccctactaggtacgcatgcacttgtgctctgcttcttgccaactttccttcttttttttttttacctttttgttttaacattttttttggattgtttggctatttgcatatgtggtttttttgttcaagattagactgttatagacaaattctaggggtcaaaattcatgcattgtgggcaacattcttcccttcaactggtaaccatgtcattaatcttgagaaaaccatatttactgtttgacttcatgcattggctttatgagccacagccagaacttcaatttaaaacttaatttcaatttcagaaatttgcgtaatttctgacccctcggcaaatcattatctcaactgaaattttgcattttttttaaatttgtattgaattggtcaaggtttatttaaattcagtaaaaaaataaaattcaaataattttggtccaaaaagtactgaagtttatttaaattttgatgataccgattttttttactgaaattgaaggtgcaagtatagtcaagcagttaattaagagtcataaaaaacaatgtcaaatctaatgatcaaataccatgcttcgcgccgagcttagtgtttttttacgggccactcacacgtggtaaacttttttgttggtctaacttcacaccaaacttaaatggtttattcctaagaaaggcaaaataatggtaaattatcaaattttctaaaacaaaaatactctgagcggatccactcaactagcatgagaagtacaaaagcacatacgtgcacaataattgtaagatgctccgttaaaatgcaataacatggcaaaatgaacttattttcaacacataaacatctgccatgctggcaaaacatttcttggttagtctgccacatcagaatccctcatagaaaaaaaatactacattcattcttttacatatgacactcagtataaataacttatgacatgtatcaccatacattaatgcagggtgtccttagactacgcattatcaaacccataccacgtgggcgccatcgacccctacaccaggctgcagtacactagcatgttgtatgcacaggtggatgcagtggcgtacgcgacatcgcagctaggatacaacaacatcccggtgtatgtgtcggagaccggatggccatcaaagggtgacactgacgaggtgggcgccaccgtggagaacgctcgggcctacaaccgcaacctattgctccggcaggcggccggcgagggcacgccactccggccacggcagcggctagaggtctacctgttcgcgcttttcaacgagaacatgaagcccgggccgacgtcggagcgtaactatgggttgtaccagcccgatggtaggacgatggtgtacaacgttggactcatgcagcagagcacatctgcggcatcgctctccctcgccgcctccccagcaaccaagacggtgagtgctcactaattactgctatagctagaatctgatagccgatgttttctactcactctatccaatatatatgtattttttgaacaatgtaaaacgtagacatttttaattttgattgccaataaataaacataaagggaagaagtaaaagtgatggtaataaattatgtggagcaaccgatcacaatataatatttaaaataattagacattacttattaatgtaatgtatgagagaccgtttcgatatactatccgaggaagtattatgctactatgttttttcagatactaaaagtacaactattattccctactgcatgaactaagaatctactaggatatgtactacataaccaacgtccgaattagcagaactataatttcttgtaaaaatagagttaaacttttagataaattatcctctagtggttttagtataaaaaatatatttcaccttactaatcgtaaactattatagcaccaattctaaaaaaaagagctaattaaaatatctggcattaaaaaaccttagagctagctagagctatgcatgcaaaacaggaaaatactccctatccaaatatacaagtgggcgatgcccgtgctgcacatatatatcataatattacaacatcacaaattaagctataacactcgtcaactgatcgatcactttcatttgcatggagaagattacatccttggcaagaaaccaacgggtagagcagctagtgtgtcgtaggcagcagtttttcgttgacttagctgcattgcacacttattctttcccttgttttcacttaaagtgatataacaccgctaggatcatcaagccaccccatgcattcaccaaaagttaagtcacaaaggagagagagatatgatcttctttttcacatggtcgtgttcacactgctaattgattgaggagtgtttagagaatgcatcatcacaagtcaaatttgtatggctgtccctttttttaatgaaatcacgaacaataaggaggaaattttgttaaatattctttgtgcgtttgtgcacacaagaataattccaaagtgcccctttgcccaccgcttttcttgcaattttagaatctgtggggggagcaaattgtaatgattgaacaatcagcgttaggtgtatatgcgattcttcttgccaaagatttgttatagtggagttaatagtgatggttaatgataattagtctacaaaaatcaccgaaagtggttatatgattatgtatatatttcggggaatgatcggccggagacattcttgattgctcctgtaatcagtaaagaaaacacaacagaagatttagggtagattatgcttaatgttatttagtaacttcagttactgtagaatctatgcaggcctttttgttcaagactgcagaagtagtactactactcggatacatatatttcctattttgtaaacaagatttatctaacaagtagacatcatcttaattttgtggtgcaggatgccaagaagaactttgctggtctatgtttcctctcatccttggccatcctagtaatttcccaggctttctttctgggatagcagtgcccaaatgcaagctcagcacaaaggaagagcttttggcacaagcaaaatggcttgactattgtggaccaaaagcctctccaagaccaaaggggagatgcaccatttcaaggtatgccccccccccccctctcctaccccaattgcatgccatcttatcctacatgacacaacctcctttcttgaagctttttatccccaaaaccccagccatccaagatagaaaggcacttttctttccctttcacatctccaatgagaagagaaaaacaaaacatcacaaaaagttggggtcatagtacaggatggcaacatgtactaatacaccataggacaatctaaaacacttggttacaagggttcctctttgatttgccattgcaggaggcaaaaggaaaattaaaggtagcagctgttgccaagaggaaaagctggaggaggccactttgggatgtggaaggcactatcttggggatggcacagagttgtaa</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0531000, RefSeq:Os06g0531000