Os06g0545900

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Revision as of 09:22, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0545900| Description = Protein of unknown function DUF246, plant family protein| Version = NM_001064352.1 GI:115468435 GeneID:4341244| Leng...")
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Gene Name

Os06g0545900

Description

Protein of unknown function DUF246, plant family protein

Version

NM_001064352.1 GI:115468435 GeneID:4341244

Length

4268 bp

Definition

Oryza sativa Japonica Group Os06g0545900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:21512355..21516622

Sequence Coding Region

21512578..21512907,21512997..21513237,21513342..21513667,21513777..21513920,21514083..21514203
,21514468..21514556,21514644..21514714,21514988..21515093,21515213..21515302
,21515814..21516107

Expression

GEO Profiles:Os06g0545900

Genome Context

<gbrowseImage1> name=NC_008399:21512355..21516622 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:21512355..21516622 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaaggttcttgcggcggtggcggcggcggcggcgccgggcagatggcggcgtggcaggggagggtcggggcgaccaacatcgggaggctgcggcatgggaagacgtcgtcgtcgtcggcggcggcggtggcggcgaggggcggcggcgtgacggcgtggcacctgagggtgttcgccggcgtggtgggagtgatggggtgcctcctgctggtggcgtccctgatgatgtccgccgtccaccaggtgcagttcaggaacgcagccatttccaggagcttcaggggccttcaggaactgaagcaaaattctgtaaggacggagaaagcagagcagataatgcacccaaggcttctgcaaatggcaacttcagttgtcacaaagaacgagtctgacagtgacagtgtaaaattttcactatgggaagagccctacaaacaagcacgtaaatggaagccctgtgctgcaaagcatagtttacctgatgaagtgcctgaagagaacaacaatgggttcattctgatcagcgcgaatggtggtctgaaccaacagcgtgtggctgtgtgtaatgctgttgttgttgcagctctgcttaatgctacactagtcctccccaggtttctttacagcagcgtttggaaggacacaagccagttcggtgacatatatcaggaggactactttgtgaactacatgaagagcgatgtgcacattgtgaaagatttgcctccccatcttcagtcactggatctcgaagcaatcggcagccaaatcacagacatggacatctcgaaagaagctgcgccatctgaattcatcaaagctgtgctcccaattctccagcagaatggcgttgtccatttcctcggattcggcaaccggctcggcttcgattcggtgcccgttcatctgcagaggctgcgatgcaggtgcaacttccacgcgctcaagttcgtcccggagatccagcgggcgggctccctgctggtccagcggctgcgccgcgccggcgcgatgcggacggagatggacaagcagctgttcgggagcaacatgctcgacgtccccgccctcctcgccggcggcgagccgagcaggtacctggcgctgcacatgaggttcgaggaggacatggtggcgtactcgctctgcgacttcggcggcggcgacgcggagagggaggagctgcaggcgtacagggagacccacttcccgacgctcgccatgcgcctccggaacacgtcggtgtcgccggaggagcagcgcagcctggggcggtgcccgctgacgccggaggaagccgggctcgtgctcaccgcgctcggctacgaccgcgggacgttcatctacgtcgccgggtcacagatatacggcggcgccgcgcggctccgcccactgacgcgcctcttccccaacctggtcaccaaggaggacgtcctctcctccgccgagctagccccattcaagaacttctcctcccggctcgcggcgctggacttcatcgcgtgcgcctcggcggacgtgttcgcggtgacggactccggcagccagctgtcgtcgctggtgtccgggtaccgggtgtaccacggcagggggagggcgccgacgctgcacccgaaccggaagcgatacgcgcagatcctgggcgaggaggaggggatcgggtggggcggattcgagaggagggtgaggaacatggtggaggagtacaagcgggtcagcgcgcggccgcgggggcggagcgtgtaccggcagccgaggacgcccgggtgcatgtgcagggcagccggcgacggcagcgtcgacttctga</cdnaseq>

Protein Sequence

<aaseq>MEGSCGGGGGGGAGQMAAWQGRVGATNIGRLRHGKTSSSSAAAV AARGGGVTAWHLRVFAGVVGVMGCLLLVASLMMSAVHQVQFRNAAISRSFRGLQELKQ NSVRTEKAEQIMHPRLLQMATSVVTKNESDSDSVKFSLWEEPYKQARKWKPCAAKHSL PDEVPEENNNGFILISANGGLNQQRVAVCNAVVVAALLNATLVLPRFLYSSVWKDTSQ FGDIYQEDYFVNYMKSDVHIVKDLPPHLQSLDLEAIGSQITDMDISKEAAPSEFIKAV LPILQQNGVVHFLGFGNRLGFDSVPVHLQRLRCRCNFHALKFVPEIQRAGSLLVQRLR RAGAMRTEMDKQLFGSNMLDVPALLAGGEPSRYLALHMRFEEDMVAYSLCDFGGGDAE REELQAYRETHFPTLAMRLRNTSVSPEEQRSLGRCPLTPEEAGLVLTALGYDRGTFIY VAGSQIYGGAARLRPLTRLFPNLVTKEDVLSSAELAPFKNFSSRLAALDFIACASADV FAVTDSGSQLSSLVSGYRVYHGRGRAPTLHPNRKRYAQILGEEEGIGWGGFERRVRNM VEEYKRVSARPRGRSVYRQPRTPGCMCRAAGDGSVDF</aaseq>

Gene Sequence

<dnaseqindica>3716..4045#3386..3626#2956..3281#2703..2846#2420..2540#2067..2155#1909..1979#1530..1635#1321..1410#516..809#agctccaggggagagtccctctcacgttaggttgttcccttcccctgaattcctaaccattttctatcatagaaatcacatatttttaacaccaccatctccctcctggcctgtgaggcgagcacgtttgtttaatcgtcgttgcctcgcgcgtgggcgccgaagcttcgatctgcatccgatcggatcagaatcatcacctgctcatccggtggttgtgtttctgtctgtccaccctgctgctgctgcctcgtttgacctaccgtttctttaatctggcgccagcagcatacgtgctatagtgtgctgccattggatggccacgttgtccatgaactggtcaagaggaggacgaagagaaatagaaaaaggagaagcgaatcattcaacagctcggtacacgaatggttgttgccgtgttgcgttaggcttttgtgagctggtgaggaggttgtcctcgatgacaagctaggtgtgaaggacgatggtttcttgatcgggacggccgggcatccatggaaggttcttgcggcggtggcggcggcggcggcgccgggcagatggcggcgtggcaggggagggtcggggcgaccaacatcgggaggctgcggcatgggaagacgtcgtcgtcgtcggcggcggcggtggcggcgaggggcggcggcgtgacggcgtggcacctgagggtgttcgccggcgtggtgggagtgatggggtgcctcctgctggtggcgtccctgatgatgtccgccgtccaccaggtgcagttcaggaacgcagccatttccaggagcttcaggggccttcaggtacgctgcctacctctgctctgctctcctctcatcgaatcaaatcatggcaaattaagctcagtttgatcatcacaaaagcgtccccaaattgcatcccattttcatcattttttctagtccttgacttgttttggttgaagtctcatggtatgatgggctttcttacaaactcggattgcaatgatatttcatccaaaaaaatatctgatggtgcgttttttttttcaaaatgaaaacaaaaatgtactgatttggcatggtcattggaaccaatgcgctctcaatgcaataaaaaactgaatggaagtcagtctagcagcttgaatttccattcaaatgaagtacggttcctgtagaaggaatgatcaggacctagcagcattatatgacacgctgactgctgacatattataaatcgtattgcaaatttagatagaacaccggtaattgatttcttcatattctcgtcgaatcagtcgacctgataatcccattttgtgaattgaaggaactgaagcaaaattctgtaaggacggagaaagcagagcagataatgcacccaaggcttctgcaaatggcaacttcagttgtcacaaaggtttcacgctgccatcatacgcggcaccaaactgccaattagcttcagaagtagtgtaatttacgacatcatatatttagcttttactcatgtcaaattttccctccctgccagtgcagaacgagtctgacagtgacagtgtaaaattttcactatgggaagagccctacaaacaagcacgtaaatggaagccctgtgctgcaaagcatagtttacctgatgaaggtgaagcctttcctttcaagcaattgcaattagtttcattatcatcaccatatcaggtgacaaaaagaattcttaacccaccccttctgtattaaaagaatgaaagcccttattgcagcttttttttattgatgcttgaagcctctgcaatttgaattcttaaaccatcaacatctagcatatgcctacaccctgaaatgtttctgaagcatgggaaaatactatggtttaacacaactatttcatctctcacactggatttgtgcttcacagtgcctgaagagaacaacaatgggttcattctgatcagcgcgaatggtggtctgaaccaacagcgtgtggctgtaaggatctagtgctgaaatgctcacaaaatccatactacgttattttcagattcagtagctaatagttgaatttttatcttccaggtgtgtaatgctgttgttgttgcagctctgcttaatgctacactagtcctccccaggtttctttacagcagcgtttggaaggacacaaggttagaactgcaactatgactgccagtataagcttggttctacctttttcttttacttttattgtaagtaatcattgcagttctactaatcgcattatggaaagaaaagcacaccgaactgagtttatgcttttgctgacatgtatcaattatcagttgaactgaaattgataaactgcgatactatttgccatctttttatcaagaaataatttttggtaacttttgtctgatatgcttcgccgaacctttcgtttcgaccagccagttcggtgacatatatcaggaggactactttgtgaactacatgaagagcgatgtgcacattgtgaaagatttgcctccccatcttcagtcactggatctcgaagcaatcggcagccaagttagtgtctctactctaacaattatgctacctgattctgagaaaaaaaaatctatgatcagtttgaagatcataattttttcactaaatcttgagaaatttctgtagaattcatgccctctaaagtctaaacagatgcgaaatctctctgtttcatgacagatcacagacatggacatctcgaaagaagctgcgccatctgaattcatcaaagctgtgctcccaattctccagcagaatggcgttgtccatttcctcggattcggcaaccggctcggcttcgattcggtgcccgttcatctgcaggtcacgcacacagttcatcttcctcgatcgtcgcacttgtcgagatgagagaagcaccattgccatccatcctctgctttgctcatggcgtcggcgtcggttcttgcagaggctgcgatgcaggtgcaacttccacgcgctcaagttcgtcccggagatccagcgggcgggctccctgctggtccagcggctgcgccgcgccggcgcgatgcggacggagatggacaagcagctgttcgggagcaacatgctcgacgtccccgccctcctcgccggcggcgagccgagcaggtacctggcgctgcacatgaggttcgaggaggacatggtggcgtactcgctctgcgacttcggcggcggcgacgcggagagggaggagctgcaggcgtacagggagacccacttcccgacgctcgccatgcgcctccggaacacgtacgtctccgtctcgatctcttgcggaagaacccgatcgccggcgtggtgtcttgtctgacacggtggcgccgccgccatcgcgtgcgtttgtgtgtgtgcaggtcggtgtcgccggaggagcagcgcagcctggggcggtgcccgctgacgccggaggaagccgggctcgtgctcaccgcgctcggctacgaccgcgggacgttcatctacgtcgccgggtcacagatatacggcggcgccgcgcggctccgcccactgacgcgcctcttccccaacctggtcaccaaggaggacgtcctctcctccgccgagctagccccattcaagaacttctcctcccgggtcggtaaaacatcaaacacctcccctgcaagcaacgccatctcctccgttattctgacatccgaaagaaaaaaaaaaacaaaatgcagctcgcggcgctggacttcatcgcgtgcgcctcggcggacgtgttcgcggtgacggactccggcagccagctgtcgtcgctggtgtccgggtaccgggtgtaccacggcagggggagggcgccgacgctgcacccgaaccggaagcgatacgcgcagatcctgggcgaggaggaggggatcgggtggggcggattcgagaggagggtgaggaacatggtggaggagtacaagcgggtcagcgcgcggccgcgggggcggagcgtgtaccggcagccgaggacgcccgggtgcatgtgcagggcagccggcgacggcagcgtcgacttctgatgacggcgccgcccgccggcgagttctccgcgtctcgatcgaaattcttttgtgcatagctcggtttctaattttctataggtttttcgggtcgttttaaccttttaatagctctaggatacacggcaggtttaaatgatcaaattttgaattttttttacaggctgtttttagattgtaacaaacagatttgaaaaaggtgcaattcaaaattatgtgtctg</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0545900, RefSeq:Os06g0545900