Os06g0546400

From RiceWiki
Revision as of 09:22, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os06g0546400| Description = Ribosomal protein L1 family protein| Version = NM_001064354.1 GI:115468439 GeneID:4341246| Length = 7227 bp| Defini...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os06g0546400

Description

Ribosomal protein L1 family protein

Version

NM_001064354.1 GI:115468439 GeneID:4341246

Length

7227 bp

Definition

Oryza sativa Japonica Group Os06g0546400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:21543475..21550701

Sequence Coding Region

21547298..21547390,21547458..21547563,21547978..21548042,21548122..21548166,21548265..21548372
,21548459..21548546,21548970..21549016,21550249..21550332

Expression

GEO Profiles:Os06g0546400

Genome Context

<gbrowseImage1> name=NC_008399:21543475..21550701 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008399:21543475..21550701 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ttgttggattggtgcaaagttatactgaccatatttctccctgggttacagatggtgcgtggcgcgttaactttgccacatggcactggcaagactgttagggtagcggtatttgcagaaggtcctgcagcagatgaagctagagctgctggagctgatgtcgttggtggtgacgagctgattgaggagatccgcacaggaggcggtaaactgagttttgacaagtgcattgctacccctatgtacatgcctcgtctttcgaaggttgctagaatattgggtccacgcggactgatgccaaatcctaagctagggtctgtgacaaacgatgtttctggtgctgtcaaagcagcaaaatcaggccgggttgatttcaaaatagataaaacagctatagtgcatgttggtcttgggaagataaatttttctgatgagaatttgcgtgaaaatattggtgcttttgtacatgcacttctacttgccaagccagtgggattaaagaaaacttcaaagtatgttggatacgtgaagaagttcacactgagtagcacaatgggtcctggatttcctgtaaccataccatcgctatccgcggcagctgatcattataacaatagcaaggtgcaagccagctaa</cdnaseq>

Protein Sequence

<aaseq>LLDWCKVILTIFLPGLQMVRGALTLPHGTGKTVRVAVFAEGPAA DEARAAGADVVGGDELIEEIRTGGGKLSFDKCIATPMYMPRLSKVARILGPRGLMPNP KLGSVTNDVSGAVKAAKSGRVDFKIDKTAIVHVGLGKINFSDENLRENIGAFVHALLL AKPVGLKKTSKYVGYVKKFTLSSTMGPGFPVTIPSLSAAADHYNNSKVQAS</aaseq>

Gene Sequence

<dnaseqindica>3824..3916#3984..4089#4504..4568#4648..4692#4791..4898#4985..5072#5496..5542#6775..6858#ccccttctccccacaccccactaaaaccccaggcctcgccagccgccgccggccgccgccactccccgccatcgccatggctcacctccgcctcctcctctcccactccagccgccaccacccccagccgcaccgtctcatctcgctcctccgcttctcctctaacaccggctccggctccggctccggcccaacgccgccgcccatcaagcccgtgtcctacgccccgaagccgcagccagcgcccgaggaggctcccgccgccgcggaggaggctgccccgagcgatgaccccgggtctcggcccccgccgccgccaaggagatcgcaggggccgccacagcggcagcagtggacgcgggaggagatgcggttcgtgaaggacgcggggccctcgatcacgccggtgtcgtacccggccagggtcgcgccgctgccggaggaccgtccggcggaggaggcacccccggaggggccggcggacgaggggctgcggggagagggggagcggatcgagatggacgccacgcgggccaggaggagcttcttcgggatgcaggcggaggaggagcaggcgccatacccgacgctcatacccgtcgagaagcggccgcagaaggtcgccattgatctcgtcgacgccatccgcgaaatcaaggtctgtcactcttgctcgtgatttttctccgtgcggtttgaattgcaattcgttttgcatttgaagataatacccatgatgtggtgatgcatttttctattacggtgtaattggcacctgggtaatagatactagtagatccaaactttacattcgactgtcattctggcagttgcatgtcagtacagggctagctttgcagcatcactatcaaatatcaatgcagaactgctgaactagtatgaaagatcaactggtattttagtgattgcctgatcggcgataggaagttcaaacatatgcaaatctcataccgattttgatgtggaagcctgggaagttggttgagctcagtctaatgactgtcttctctgctatacacggaatagctactgaaaataaacatgatcatgcaagtattgtgtcatttttaaaacatacatctgtttacttctgaaagaactatagctcatcagataatttggtatggccacctcttagttacgaagtgttcaaaactttccactccttcagtcccacccagggtttcccaaaccgccggggccggggttaccgcgccccggcggtaagcacggttaccacacggtaaccgtgaaaaaccgtacaaaaccgtgcaaaatttatcaaaaattcaaattattttttaaatttatttgaatttaaggaggttaccgcggtatttatattaccgtacccccgcggtaagctcggtaaccgcgcggttaccgacggtaagtcgaaccctggtcccaccacttctttccattagttagtgagagaattatagataaaacacttaaatttgatattggcaaaatcctgaaaatttctgcaaatttattcactaaaaaatatctgttcaaacgttttaccatcttatttcctttgttgcttcaattttatgctatttggagcagaatatgatcttttacaaatattgtttctccaatgttggttacagccctagatattatgttttattgtagatagatgttggtttatacatttagatcctctattcaatgttgcaatctaatggttcaatactttatttgatagtcatacaagttaagatgacatgaaaacttggaaagttccatagaaatattgggttaagcaactttttgcatgctttactctttcttaaaacatgaaaatcaacctaattggctgatgaaaaatgaagttttcttacttttcgctcttctgtttccagaccagtgcaaatgaaaagaagcggaattttaccgaaacagttgaagctcatgtaatgttaggtgttgatccacgtcgtggtgaccaggtttgctgcgctatatgtataaactagataattttgtagtgctaagtttttattgcttacttctctaacatggaagtgtagcattgtcattagtcattacattgcatttctgactgccggcttcattgcttgctttactttcaagacaggttttcatagctggtttagtttccatgtccttatactcaatccagccagcctttatttcagctagtgggtttgtacactgtgtttagaaagcattatgtgctaggcaggtatcagtaggacatagagaccctagaggcccctgcacagctgacagtgcaaaatccatgtttaaacagaaatgtattagaataccagaatgacaaatagacatgctattttcagaagaagcaaacatcaagaattcatgttcctgtacatccatttttcaaagaagcaatgtaaagtttgtagaattgtagctgcaccttgcataagtatatgaaatatgcttaggtcccctttgtttccgcttaggtttttaagctgacttttcattttcagcttttatggttaataagccagtagtttttatgtcgcaatgtcaagggtgtagtccaaacactaatccacataaaccaaaacaagctactcaaacctggcttttgacttaataaggatgcttatgatttatgacttaaaaagccaaagctgtccatttgtttgggctctggcttataagcccaaacaaagagggccttagactggctagtgacattttttttagaacttgcaggagatctgtgtatcatttcattaagatagataagaaaaggtgtacggtgttagagaaagactccgacacccgcccaccagggatacaagagaatagcacacacccaaaggaaaaagaaaacccaaactagtgcattagtagcccagtcctagtaaagagatcacggagcctagcagctcctgctaggcgccaaagagcgctctcattagcgatggctcggaggacatcggccaagcatggggtagcgccattaaacacacattgttcatgtgcttccaaatttcccaagcgaccaagatgattaaagagtttagccctttcttctcattagtaggtaaaccccttaccgttcttgaccaccaattggcaaacctagcagtaacctgggttggaaagctagagtagccaagccgttgcaggaccaaacaccatacttgtcgagaaaacacacaagtgactaggatgtgattaatagtttcctgagcttgatcacataatggacatgtaggtgggtgttgaagtcctcgcttgtctaaccggtctgctgtccaacaacgattattaattgccaaccatatatacaatttgcatttcaaaggcgcccaactcttccaaattcttctccaaggtgcaattgaagtggcaagatgacgcctagtgcctagtcagcctctttgttcgctttttagaactatgtgtgtatcaactcttcttgtgtcctaaccactagtgatgagttatgacagcaaaaatgtcctaagaggatatgctgattgagataacctactacttacagtaatgggaatgatttgtgtctgtctatgcgtttattcttgctgtgaggccagtgttcctcgaaaggtgaaatcatgatgcatacaacacaagttaacagagatactgctgaaatgatattatggtgttctgttacttctgttgtaccccatctagttgtgattgttagattagtggaaagttactggcaatgcacaagaaatggtgaacatagattttatgatgcatgatccaataaccaagtcaatcaatcaatcttatgatctcttttatctggttgtgattgttggattggtgcaaagttatactgaccatatttctccctgggttacagatggtgcgtggcgcgttaactttgccacatggcactggcaaggtacctttctaaatgtaacatttaggttttcttgactgttttgtgctgaggtcttctttacttttagactgttagggtagcggtatttgcagaaggtcctgcagcagatgaagctagagctgctggagctgatgtcgttggtggtgacgagctgattgaggagatccgcacaggtactttatttcctccaattgttgtataagcttcttttctttctaacgacagtcatatttgcaaattgcaatgcatgatacattgtacattgaggaacaaatgcaaggtgtggaattctagccctttttatcaggaaactttatcctactgcattataagtattagatatagatgaatagtcatttacaaggttttaaaatacttaacatcttttttttcatgtataagttatagaaattgttcgatctctttttttttttaaaaaaaaagtgatattgcagataattacctgtccagtcttttgttactgcattgcacagtatgttttcagttaggtattttcgtagttttgcatcttcaatattcaacatccctgttgattggaactttttcatctatggccatttatataggaggcggtaaactgagttttgacaagtgcattgctacccctatgtacatgcctcgtctttcgaaggtagtaatgcttatttcttgatacaaatttatcttctgtttgctatattattaatttcttgactgctttgctatttcaggttgctagaatattgggtccacgcggactgatgccaaatcctaaggtaaatatctgtcctttttgtattgtatggtatggagtgttctgccttgatgttttttatggtaccatgaatcattaacgtgacatattgctctgtagctagggtctgtgacaaacgatgtttctggtgctgtcaaagcagcaaaatcaggccgggttgatttcaaaatagataaaacagctatagtgcatgttggtcttgggaaggtacggaagatcagcattgatggaaaattcgatatttgtgttgcagctttgttgcacgccttattaatgtttgtattcttttgcagataaatttttctgatgagaatttgcgtgaaaatattggtgcttttgtacatgcacttctacttgccaagccagtgggattaaagaaaagtaagtggcctatttatatcgcgtatcttgcatctccttagtactctggacacctagcatgaaactggcactttgatcaacatatgaatgtttaagcacacggtcttaagaaaatatgctaaaaatttaatgtaaatatgctaaaaatttaatgtgattggacttgggtatttatggtcctagtgttgtactgtcagtgccacaatttcatttttttaaaatcactatcaggttttatagaaaatatatctgattttcacattttgcaactccagtggcaaaatgcctatcaaatcattctaaatggataatgactatttcttttcattcgacttctttttatttgctccatttcaatagtgttattatttgttgtttctctgaatctctttacaaggtattaatgttctccatttctttcagcttcaaagtatgttggatacgtgaagaagttcacactgagtagcacagtaagttttctctcttttctttattttgtgaaaatagaactatgctgcatttttttcccattttattgggatatcatggaatatttcacaagaaatagtacaaaaatgctaaatgcctttagctggacttctcatcttctcatggcgtccattatttgtaggctccctgagcaaggaatagattccgttatgttaaatcatacagccgtaaaagctataggattggaggcaccaggaaacaaagacctaggcttatctttagctatggccatattaggaaggaccctagtcaaactatatcgtaattattataataatgtttagaaaagagtaaatttcacaaaattacagatatattaactaaactatcgcaaaactactgatctaagatgattatcacaaaactacagatttagcactaaatttactagaaaactatagatttgaggtgaagtatcacaaaactacacaggtttagcaccaatttaatcacaaaagtttgatgtttataactcaagcataacatttgttctaaggatttaaacctcaaaatctgtagttttgtcataattttattattaaatctgtagttttgtgatacttagccttaaacagttaaacctgtagttttgtgataaattattgttaaatctgtagttttgtgaaatttactcgaaaagaaaataagattaaaaaactctgcactataaaaaaatgttcacttttcaaccttgaatgtgctgtttgcgtgaaagttctcagacatcttgaggaaagtttttgggacattgttaataaaataaaacagtatacttaacttatggctataccaactagtccattgacttcaaaggtagatgtttctctctagtggggagaaaggtggaaatactgctcggtacttgagaacgttgctaatttattgggatctgggatgctgctgaagttttcttgacatgattcacctattggttctgtctgtaatgtccaatgagaagtattcataaaactgcaacccaaaccttcactgaacattgggaacttgggatgcttttgaagttgtaaaaagctgcacataagcaagttcatgagtataagagaaaatatcccaagttatgcaatttgtcatcttcgactgcaatatgtacagtttctgtctgacattttttttttctgcaacttgcccttaagttggtattgtcttattgtcttaatggacgaattccttgcagatgggtcctggatttcctgtaaccataccatcgctatccgcggcagctgatcattataacaatagcaaggtgcaagccagctaacgaaatataatcaagttaaacgaacctttttgcactagtgaacacagccggcttgcaagttgtggatggtttggtgatgaagcatagaggccgaccgcagttagatgaatggctgtttttgacactgggttaatgattgtggacaaaaaccttcaagaaacattcggtaggggattcttagttttttttgctgctcagcaattatgtgactgcgttaaatggcccacctttgtcatccacggtgttctgcaatttgttgtaagaaatgtaattctgagtttattcttaaacaagattgtagttctagcattttggagataataatggtcgagataccgcataatgtgatccgacagaatatggcactcg</dnaseqindica>

External Link(s)

NCBI Gene:Os06g0546400, RefSeq:Os06g0546400